View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10342_low_44 (Length: 255)

Name: NF10342_low_44
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10342_low_44
NF10342_low_44
[»] chr2 (8 HSPs)
chr2 (6-234)||(16661579-16661807)
chr2 (112-234)||(7542685-7542807)
chr2 (70-234)||(12235106-12235270)
chr2 (16-234)||(12258168-12258386)
chr2 (82-234)||(16657104-16657256)
chr2 (16-182)||(12245045-12245211)
chr2 (110-234)||(11999851-11999975)
chr2 (111-205)||(14703866-14703960)
[»] chr7 (22 HSPs)
chr7 (16-234)||(8585293-8585511)
chr7 (15-234)||(8628894-8629113)
chr7 (16-234)||(8667782-8668000)
chr7 (16-234)||(10493961-10494179)
chr7 (16-234)||(8671217-8671435)
chr7 (16-234)||(13333043-13333261)
chr7 (82-233)||(8659792-8659943)
chr7 (84-234)||(8654881-8655031)
chr7 (76-233)||(1301887-1302044)
chr7 (82-234)||(3147701-3147853)
chr7 (110-234)||(6789969-6790093)
chr7 (19-234)||(8545998-8546213)
chr7 (29-232)||(17268315-17268518)
chr7 (82-206)||(8640164-8640285)
chr7 (82-229)||(17260670-17260817)
chr7 (19-206)||(27830490-27830677)
chr7 (74-135)||(8382562-8382623)
chr7 (70-135)||(8591055-8591120)
chr7 (16-194)||(7877360-7877538)
chr7 (145-234)||(8582192-8582281)
chr7 (51-186)||(8647275-8647407)
chr7 (70-234)||(8602391-8602555)
[»] chr4 (3 HSPs)
chr4 (18-234)||(30775617-30775833)
chr4 (16-233)||(9335479-9335696)
chr4 (122-234)||(35132915-35133027)
[»] chr1 (3 HSPs)
chr1 (18-234)||(34466380-34466596)
chr1 (82-205)||(15595468-15595588)
chr1 (110-234)||(4678145-4678269)
[»] chr5 (1 HSPs)
chr5 (38-234)||(28220336-28220532)
[»] chr8 (1 HSPs)
chr8 (82-234)||(43745276-43745428)
[»] chr6 (1 HSPs)
chr6 (84-232)||(28911013-28911161)


Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 6 - 234
Target Start/End: Complemental strand, 16661807 - 16661579
Alignment:
Q  6 aggagcagagacaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaa 105  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16661807 aggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaa 16661708  T
Q  106 aggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16661707 aggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaa 16661608  T
Q  206 cggggtcactaaatttcctaccaattaac 234  Q
    |||||||||||||||||||||||||||||    
T  16661607 cggggtcactaaatttcctaccaattaac 16661579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 112 - 234
Target Start/End: Original strand, 7542685 - 7542807
Alignment:
Q  112 ttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggt 211  Q
    ||||||||| |||||||||||||  ||||| | ||| |||||||  |||| ||| | |||||||| ||||| ||||||||||| | ||||||||| || |    
T  7542685 ttctcctgatccttgtacttaacggtaatcatgggtctgtcattgtcacccgcagtcaccttgaatggccataacagtatatcatcttgaacaacaggat 7542784  T
Q  212 cactaaatttcctaccaattaac 234  Q
    ||||||| |||||||||||||||    
T  7542785 cactaaacttcctaccaattaac 7542807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 234
Target Start/End: Original strand, 12235106 - 12235270
Alignment:
Q  70 tttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataa 169  Q
    |||||||| || |||||||| | ||| |||| ||| ||  |||||||  ||||||||||||| ||| ||||| | ||||||||||| |||||||||   |    
T  12235106 tttgtgagtaccatagatgatacttcttcgggacatagctgcttctctcgacccttgtacttgacaataatcatgggtttgtcattgacaccagcagcga 12235205  T
Q  170 ccttgaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaac 234  Q
    ||||||| ||||||||||  | ||| | |||||||||  | |||||||| |||||||||||||||    
T  12235206 ccttgaatggccacaacatcacatcatcttgaacaacttgatcactaaacttcctaccaattaac 12235270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 12258386 - 12258168
Alignment:
Q  16 acaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttct 115  Q
    ||||||||||| ||||| |||||||| ||||| ||||| ||||  ||   ||| ||||| |  || | |||||| | |||||||||||||||  ||||||    
T  12258386 acaactgcattcttaacgggtgattctaaatatgcctcagcaatttctcgcatctttgtcaataccacagatgatacttcctcggcacaaagctgcttct 12258287  T
Q  116 cctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcact 215  Q
    | |||  ||||||||| ||  ||||| | |||||| |||| ||||||||| | || || || |||||||||| |||||| | |||||| ||  | |||||    
T  12258286 cttgattcttgtactttaccgtaatcatgggtttgccattgacaccagcagtgactttaaatggccacaacattatatcatcttgaactacttgatcact 12258187  T
Q  216 aaatttcctaccaattaac 234  Q
    ||| |||||||||||||||    
T  12258186 aaacttcctaccaattaac 12258168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 234
Target Start/End: Complemental strand, 16657256 - 16657104
Alignment:
Q  82 atagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggcc 181  Q
    |||||||| |||||||| |||||||   |  |||| |||||||| |||| || | ||||| | ||||||||||| || || ||||| |||||||| ||||    
T  16657256 atagatgatatttcctcagcacaaaattggctctcttgacccttatactgaagagtaatcattggtttgtcattcactccggcaatgaccttgaatggcc 16657157  T
Q  182 acaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaac 234  Q
    |||| |  ||||| ||||||||||| || |||||||| |||||||| ||||||    
T  16657156 acaagatgatatcattttgaacaacaggatcactaaacttcctaccgattaac 16657104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 182
Target Start/End: Complemental strand, 12245211 - 12245045
Alignment:
Q  16 acaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttct 115  Q
    ||||| ||||| || ||||||||||| ||||| ||||| ||||  ||   ||| ||||| || || |||||||| | ||| || ||||| ||  ||||||    
T  12245211 acaacagcattctttaccggtgattctaaatatgcctcagcaatttctcgcatctttgttagtaccatagatgatacttcttcagcacatagctgcttct 12245112  T
Q  116 cctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggcca 182  Q
    |||| || ||||| |||||| ||||  | ||||||||||| ||||||||| | ||||||||||||||    
T  12245111 cctggcctttgtagttaacagtaattattggtttgtcattgacaccagcagtgaccttgaacggcca 12245045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 11999851 - 11999975
Alignment:
Q  110 gcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggg 209  Q
    |||||||||| || |||||||||||| ||||  | ||||||||||| ||| ||||| | |||||||| ||||| |||| |  ||| | |||||||||  |    
T  11999851 gcttctcctggcctttgtacttaacagtaattattggtttgtcattgacatcagcagtgaccttgaatggccataacaatccatcatcttgaacaacaag 11999950  T
Q  210 gtcactaaatttcctaccaattaac 234  Q
     |||||||| |||| ||||||||||    
T  11999951 atcactaaacttccaaccaattaac 11999975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 205
Target Start/End: Original strand, 14703866 - 14703960
Alignment:
Q  111 cttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaa 205  Q
    |||||||||| |||||||||||||  ||||| | ||||||||||  || |||||| | ||||| || ||||| || |||||||| | ||||||||    
T  14703866 cttctcctgatccttgtacttaaccgtaatcatgggtttgtcatcgactccagcagtgaccttaaatggccataaaagtatatcatcttgaacaa 14703960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 7e-61; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 8585511 - 8585293
Alignment:
Q  16 acaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttct 115  Q
    ||||||||||||| ||| ||||||| |||||| | |||||||| || |||||||||||||||||  |||||||| |||||||| ||||| |||  ||| |    
T  8585511 acaactgcattttgaacaggtgatttcaaatatgtctctgcaatcttcttcatgtttgtgaggatgatagatgatatttcctcagcacataggttctttt 8585412  T
Q  116 cctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcact 215  Q
    | |||||||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||||| |||||| |||||||||||||| |||||    
T  8585411 cttgacccttgtacttaacagtaatcataggtttgtcattaacaccagagataaccttgaatggccacaacattatatcattttgaacaacgggatcact 8585312  T
Q  216 aaatttcctaccaattaac 234  Q
    ||| |||||||||||||||    
T  8585311 aaacttcctaccaattaac 8585293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 15 - 234
Target Start/End: Original strand, 8628894 - 8629113
Alignment:
Q  15 gacaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttc 114  Q
    ||||||||||||||| || ||||||| ||||||||||||||||| || |||||| ||||  |||| ||||||||| |||||||| ||||| |||  ||||    
T  8628894 gacaactgcattttttacaggtgatttcaaataagcctctgcaatcttcttcatatttgcaaggataatagatgatatttcctcagcacataggttcttc 8628993  T
Q  115 tcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcac 214  Q
    || ||||||||||||||||||  |||| |||| |||||||||| ||||| |||||||||||| ||||| ||||  ||||| ||||||||||| || ||||    
T  8628994 tcttgacccttgtacttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttgaacaacaggatcac 8629093  T
Q  215 taaatttcctaccaattaac 234  Q
    |||| |||||||||||||||    
T  8629094 taaacttcctaccaattaac 8629113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 8667782 - 8668000
Alignment:
Q  16 acaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttct 115  Q
    ||||| ||||| || ||||| ||  ||| ||| ||||| ||||||||   ||| ||||| || || ||||| || |||||||| ||||||| | ||||||    
T  8667782 acaacggcattcttgaccggcgaccccagatatgcctccgcaacctctcgcatctttgtaagcaccatagaagatatttcctcagcacaaaagtgcttct 8667881  T
Q  116 cctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcact 215  Q
    | |||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||| |||||||||| ||||||| |||||||||||||||||||    
T  8667882 cttgacccttgtacttaacagtaatcataggtttgtcattaacaccagaaataaccttgaatggccacaacaatatatctctttgaacaacggggtcact 8667981  T
Q  216 aaatttcctaccaattaac 234  Q
    ||| |||||||||||||||    
T  8667982 aaacttcctaccaattaac 8668000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 10494179 - 10493961
Alignment:
Q  16 acaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttct 115  Q
    ||||| ||||| || || |||||  ||||||| ||||||||||||||   ||| ||| | ||||| |||||||| |||||||||||||||| | ||||||    
T  10494179 acaacagcattcttgactggtgaccccaaatatgcctctgcaacctctcgcatctttataaggaccatagatgatatttcctcggcacaaaagtgcttct 10494080  T
Q  116 cctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcact 215  Q
    | ||||||||||||||| |  ||||| ||||||||||||| ||||| | | |||||||||| |||||||||| |||||| ||||||||||| || |||||    
T  10494079 cttgacccttgtacttagcggtaatcataggtttgtcattgacacctgaagtaaccttgaatggccacaacattatatcgttttgaacaaccggatcact 10493980  T
Q  216 aaatttcctaccaattaac 234  Q
    ||| ||||| |||||||||    
T  10493979 aaacttcctgccaattaac 10493961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 8671435 - 8671217
Alignment:
Q  16 acaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttct 115  Q
    ||||| ||||| || |||||||| |||| ||| ||||| ||||||||   ||| ||||| || || ||||| || |||||||| |||||||   ||||||    
T  8671435 acaacggcattcttgaccggtgactccagatatgcctccgcaacctctcgcatctttgtaagcaccatagaagatatttcctcagcacaaaattgcttct 8671336  T
Q  116 cctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcact 215  Q
    |  |||| | |||||| ||| ||||| ||||||||||||||||||||| |||||||||||| |||||||||| ||||||| |||||||||| || |||||    
T  8671335 ctagaccttcgtacttgacagtaatcataggtttgtcattaacaccagaaataaccttgaatggccacaacaatatatctctttgaacaaccggatcact 8671236  T
Q  216 aaatttcctaccaattaac 234  Q
    ||| |||||||||||||||    
T  8671235 aaacttcctaccaattaac 8671217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 13333261 - 13333043
Alignment:
Q  16 acaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttct 115  Q
    ||||| ||||| || || |||||  ||| ||| ||||||||||||||   ||| ||||| ||||| |||||||| |||||||||||||||| | ||||||    
T  13333261 acaacggcattcttgactggtgaccccatatatgcctctgcaacctctcgcatctttgtaaggaccatagatgatatttcctcggcacaaaagtgcttct 13333162  T
Q  116 cctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcact 215  Q
    | ||||||||| ||||| |  ||||| |||| ||||| || ||||||| | |||||||||| |||||||||| |||||| ||||||||||| || |||||    
T  13333161 cttgacccttgcacttagcggtaatcataggcttgtcgttgacaccagaagtaaccttgaatggccacaacattatatcattttgaacaaccggatcact 13333062  T
Q  216 aaatttcctaccaattaac 234  Q
    ||| |||||||||||||||    
T  13333061 aaacttcctaccaattaac 13333043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 82 - 233
Target Start/End: Original strand, 8659792 - 8659943
Alignment:
Q  82 atagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggcc 181  Q
    |||||||| |||||||| ||||||| | ||||||||||||||||||||| |||| ||||| |  ||||||| || |||||||| ||||||||||| ||||    
T  8659792 atagatgatatttcctccgcacaaaagtgcttctcctgacccttgtactgaacattaatcatgagtttgtcgttcacaccagcgataaccttgaatggcc 8659891  T
Q  182 acaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaa 233  Q
    ||||||  || |||||||||||||| |  |||||||| ||||||||||||||    
T  8659892 acaacatcatgtctttttgaacaactgaatcactaaacttcctaccaattaa 8659943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 84 - 234
Target Start/End: Original strand, 8654881 - 8655031
Alignment:
Q  84 agatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccac 183  Q
    |||||| |||||||| |||||||   ||||||| ||||| |||||||||||| ||||| | ||||||||||||||||||| | ||||| |||| ||||||    
T  8654881 agatgatatttcctcagcacaaaattgcttctcttgacctttgtacttaacagtaatcatgggtttgtcattaacaccagaagtaaccatgaatggccac 8654980  T
Q  184 aacagtatatctttttgaacaacggggtcactaaatttcctaccaattaac 234  Q
    ||||  ||||| ||||||||||  || |||||| | |||||||||||||||    
T  8654981 aacatgatatccttttgaacaataggatcactatacttcctaccaattaac 8655031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 76 - 233
Target Start/End: Original strand, 1301887 - 1302044
Alignment:
Q  76 aggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttga 175  Q
    ||||| |||||||| ||||||||  | |||| | ||||||||||||||||||||||||||  ||||   ||||||||||| ||||| || || |||||||    
T  1301887 aggaccatagatgatatttcctccacgcaaaagtgcttctcctgacccttgtacttaacaacaatcacgggtttgtcattcacaccggcgatgaccttga 1301986  T
Q  176 acggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaa 233  Q
    | ||||||||||  || |||||||||||||| |  |||||||| ||||||||||||||    
T  1301987 atggccacaacatcatgtctttttgaacaactgaatcactaaacttcctaccaattaa 1302044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 82 - 234
Target Start/End: Original strand, 3147701 - 3147853
Alignment:
Q  82 atagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggcc 181  Q
    |||||||||||||| || ||||| ||| |||||||||| |||||| |||||||   |||| | ||||||||||| || ||   ||| |||||||| ||||    
T  3147701 atagatgagatttcttcagcacataggtgcttctcctgtcccttgcacttaaccgaaatcatgggtttgtcattcactccgcaaatgaccttgaatggcc 3147800  T
Q  182 acaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaac 234  Q
    ||||||  ||||| ||||||||||| |  |||| ||| |||||||||||||||    
T  3147801 acaacatcatatcattttgaacaacagaatcaccaaacttcctaccaattaac 3147853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 6789969 - 6790093
Alignment:
Q  110 gcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggg 209  Q
    ||||||||| |||||| |||| ||||  |||| | || |||||||| || |||||||| |||||||| ||||| ||||  ||||| ||||||||||| |     
T  6789969 gcttctcctcacccttatactcaacaacaatcatgggcttgtcattgacgccagcaatgaccttgaatggccaaaacatcatatcattttgaacaacaga 6790068  T
Q  210 gtcactaaatttcctaccaattaac 234  Q
     |||||||| |||||||||||||||    
T  6790069 atcactaaacttcctaccaattaac 6790093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 8545998 - 8546213
Alignment:
Q  19 actgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcct 118  Q
    |||||||| ||||| ||||| |||||| | |||||||||| |||   ||| | || |||||  | |||||| ||||| || |||  || | |||| ||||    
T  8545998 actgcattcttaacaggtgactccaaaaatgcctctgcaatctctcgcatctgtgagaggatcacagatgatatttcttcagcaacaaagtgcttttcct 8546097  T
Q  119 gacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaaa 218  Q
     ||||||||| || |||  ||| || ||||||||||||||||| | ||| ||||| || ||||||||||||| ||| || ||||||| ||  |||||| |    
T  8546098 cacccttgtagttcacaagaattgtcggtttgtcattaacaccggaaatgaccttaaagggccacaacagtagatcattctgaacaaaggaatcactata 8546197  T
Q  219 tttcctaccaattaac 234  Q
    |||||| |||||||||    
T  8546198 tttccttccaattaac 8546213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 232
Target Start/End: Original strand, 17268315 - 17268518
Alignment:
Q  29 taaccggtgattccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgta 128  Q
    |||||| |||||| | |||  |||| |||| ||||  ||| |||||||| || ||||| || |||||||| ||||||| | | |||||| | ||||||||    
T  17268315 taaccgatgattctagatattcctcagcaatctcccgcatctttgtgagtaccatagacgaaatttcctctgcacaaaagtgtttctcccgtcccttgta 17268414  T
Q  129 cttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctacca 228  Q
    ||| |    |||| | ||||||||||| | | | ||||| |||||||| |||||| ||| |||||||||||| || || || |||||||| |||||||||    
T  17268415 cttgagggaaatcattggtttgtcattcatatccgcaatgaccttgaatggccacgacattatatctttttggaccacaggatcactaaacttcctacca 17268514  T
Q  229 atta 232  Q
    ||||    
T  17268515 atta 17268518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 206
Target Start/End: Complemental strand, 8640285 - 8640164
Alignment:
Q  82 atagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggcc 181  Q
    |||||||| ||||||||||||||||   ||||||| | ||||||||| |||||| ||||||| ||||||||||| || |   |||| |||||||| ||||    
T  8640285 atagatgatatttcctcggcacaaaaacgcttctcttcacccttgtatttaacaataatcgtgggtttgtcattcaccc---caatgaccttgaatggcc 8640189  T
Q  182 acaacagtatatctttttgaacaac 206  Q
    |||||   ||||| |||||||||||    
T  8640188 acaacttcatatcattttgaacaac 8640164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 82 - 229
Target Start/End: Original strand, 17260670 - 17260817
Alignment:
Q  82 atagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggcc 181  Q
    ||||| ||||||||||| ||||||| | | |||||| | ||||||||||| |    |||| | ||||||||||| | | | ||||| |||||||| ||||    
T  17260670 atagacgagatttcctctgcacaaaagtgtttctcccgtcccttgtacttgagggaaatcattggtttgtcattcatatccgcaatgaccttgaatggcc 17260769  T
Q  182 acaacagtatatctttttgaacaacggggtcactaaatttcctaccaa 229  Q
    || ||| |||||||||||| || || || |||||||| ||||||||||    
T  17260770 acgacattatatctttttggaccacaggatcactaaacttcctaccaa 17260817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 27830677 - 27830490
Alignment:
Q  19 actgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcct 118  Q
    |||||||| ||||||||||||| |||||| ||||| || | |||   ||| ||||| ||||| || ||||| |||||||| ||||| | | | |||||||    
T  27830677 actgcattcttaaccggtgattgcaaatatgcctccgcgatctctcgcatctttgtaaggaccattgatgaaatttcctccgcacataagtgtttctcct 27830578  T
Q  119 gacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaac 206  Q
    ||| |||||||||||||  || | | |||||||  || ||| ||| ||| || |||||  |||||||   ||||||||||||||||||    
T  27830577 gactcttgtacttaacaacaaacatgggtttgttgtttacatcagtaatgactttgaatagccacaagtttatatctttttgaacaac 27830490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 8382623 - 8382562
Alignment:
Q  74 tgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaaca 135  Q
    ||||||| ||||| ||||||||||||||||||||| | || |||| |||||| |||||||||    
T  8382623 tgaggaccatagaggagatttcctcggcacaaaggtgtttttcctcacccttatacttaaca 8382562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 8591055 - 8591120
Alignment:
Q  70 tttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaaca 135  Q
    |||||||| || || |||||||||||||| ||||||||  |||| |||| ||||||||||||||||    
T  8591055 tttgtgagaaccatggatgagatttcctccgcacaaagacgcttttcctcacccttgtacttaaca 8591120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 7877538 - 7877360
Alignment:
Q  16 acaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttct 115  Q
    ||||||||||| || || ||||| |||||| |   |||||||| |||   ||| ||||| ||||  || ||||| |||||||||||||||| | |||| |    
T  7877538 acaactgcattcttgacaggtgactccaaaaacttctctgcaatctcgcgcatctttgtaaggatcatggatgatatttcctcggcacaaaagtgctttt 7877439  T
Q  116 cctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatc 194  Q
    |||  ||||| ||||||||| | ||   ||| ||||||| |  |||||||| |||||| || ||||||||||| |||||    
T  7877438 cctcgcccttatacttaacaatgatatcaggcttgtcatcagaaccagcaacaaccttaaatggccacaacagaatatc 7877360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 234
Target Start/End: Original strand, 8582192 - 8582281
Alignment:
Q  145 ggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaac 234  Q
    |||||||||||| |||| ||  | |||||||| |||||||||   ||||| |||||||||| ||  |||||| ||||||| |||||||||    
T  8582192 ggtttgtcattagcacctgcggtgaccttgaagggccacaacttgatatccttttgaacaatggaatcactatatttccttccaattaac 8582281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 186
Target Start/End: Original strand, 8647275 - 8647407
Alignment:
Q  51 ctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttg 150  Q
    ||||||||||||   ||| ||||||||||  || ||||| |||||||| ||||||    ||||||| | ||||||||| |||||| ||||| | ||||||    
T  8647275 ctctgcaacctctcgcatctttgtgaggatcatcgatgatatttcctcagcacaataacgcttctcttcacccttgtatttaacaataatcatgggtttg 8647374  T
Q  151 tcattaacaccagcaataaccttgaacggccacaac 186  Q
    ||||| || |   |||| |||||||| |||||||||    
T  8647375 tcattcaccc---caatgaccttgaatggccacaac 8647407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 234
Target Start/End: Original strand, 8602391 - 8602555
Alignment:
Q  70 tttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataa 169  Q
    ||||| ||||| || |||||||||||||| ||||| | | |||| |||  |||||| ||||||||| | |||  ||||||||||| |   |||| || ||    
T  8602391 tttgtaaggaccattgatgagatttcctcagcacagaagtgcttttccccacccttatacttaacaatgatctcaggtttgtcatcattgccaggaacaa 8602490  T
Q  170 ccttgaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaac 234  Q
    |||| || ||||||||| |||| || || ||||  || |  |||||| ||||||| |||||||||    
T  8602491 ccttaaatggccacaaccgtatgtcattctgaatgacagaatcactatatttccttccaattaac 8602555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 30775617 - 30775833
Alignment:
Q  18 aactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcc 117  Q
    ||||||||||||||| || |||||||||||   |||||||| |||  |||| ||||||||||| || ||||| |||||||||||||| ||||| ||||||    
T  30775617 aactgcatttttaactggggattccaaatacatctctgcaatctctctcatatttgtgaggactattgatgaaatttcctcggcacagaggagtttctcc 30775716  T
Q  118 tgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaa 217  Q
    || |||||| ||||||    |||| | ||||||||||||||||||| || ||||||||| ||||||||||  ||||||||||||||||| ||||| ||||    
T  30775717 tggcccttgaacttaagggaaatcatgggtttgtcattaacaccagaaacaaccttgaatggccacaacaaaatatctttttgaacaacagggtcgctaa 30775816  T
Q  218 atttcctaccaattaac 234  Q
    |||||||||||||||||    
T  30775817 atttcctaccaattaac 30775833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 233
Target Start/End: Complemental strand, 9335696 - 9335479
Alignment:
Q  16 acaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttct 115  Q
    ||||| ||||| || ||||| ||  ||||||| ||||| ||||||||  |||| ||||| || |  ||||| || |||||||| ||||||| | ||||||    
T  9335696 acaacggcattcttgaccggcgaccccaaatatgcctccgcaacctctctcatctttgtaagcaacatagaagatatttcctcagcacaaaagtgcttct 9335597  T
Q  116 cctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcact 215  Q
    | ||||||||||| |||||| ||||| ||||||||||||||||||||| |||||||||||| |||||||||| ||||||| ||||||||||  | |||||    
T  9335596 cttgacccttgtagttaacagtaatcataggtttgtcattaacaccagaaataaccttgaatggccacaacaatatatctctttgaacaaccagatcact 9335497  T
Q  216 aaatttcctaccaattaa 233  Q
    ||| ||||||||| ||||    
T  9335496 aaacttcctaccagttaa 9335479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 234
Target Start/End: Original strand, 35132915 - 35133027
Alignment:
Q  122 ccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaaattt 221  Q
    |||||||||||||  ||||| | ||||||||||| ||||| ||| | |||||||| ||||| | ||||||||| | ||||||||  || |||||||| ||    
T  35132915 ccttgtacttaaccgtaatcatgggtttgtcatttacaccggcagtgaccttgaatggccatagcagtatatcatcttgaacaataggatcactaaactt 35133014  T
Q  222 cctaccaattaac 234  Q
    |||||||||||||    
T  35133015 cctaccaattaac 35133027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 34466596 - 34466380
Alignment:
Q  18 aactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcc 117  Q
    ||||||||| ||||  ||||||||||||||  ||||||||   |||  ||| ||||  ||||  ||||||||||||||||| ||||| ||| ||||||||    
T  34466596 aactgcattcttaattggtgattccaaatattcctctgcagtatcccgcatctttgaaaggatcatagatgagatttcctcagcacataggtgcttctcc 34466497  T
Q  118 tgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaa 217  Q
    |||||||| |||||||    |||| | || ||||||||||||||||||||||| ||||| ||||| ||||  |||||| |||||||| | || |||||||    
T  34466496 tgacccttatacttaagggaaatcattggcttgtcattaacaccagcaataactttgaatggccataacatcatatctgtttgaacatcaggatcactaa 34466397  T
Q  218 atttcctaccaattaac 234  Q
    |||| || |||||||||    
T  34466396 attttctgccaattaac 34466380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 205
Target Start/End: Original strand, 15595468 - 15595588
Alignment:
Q  82 atagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggcc 181  Q
    ||||| || |||||||| ||||||| | |||| || ||||||||||| |||||| ||||| | ||||||||||| ||||   |||| |||||||| ||||    
T  15595468 atagacgatatttcctcagcacaaaagcgcttttcttgacccttgtatttaacaataatcatgggtttgtcattcacac---caatgaccttgaatggcc 15595564  T
Q  182 acaacagtatatctttttgaacaa 205  Q
    |||||  |||||| ||||||||||    
T  15595565 acaactttatatcattttgaacaa 15595588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 4678269 - 4678145
Alignment:
Q  110 gcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggg 209  Q
    ||||||| |||||||||||||||||||||||| | ||||| |||||  ||||||  || ||| | || ||||||||||  || |||||||||||||| |     
T  4678269 gcttctcttgacccttgtacttaacactaatcatcggtttatcattctcaccagtgatgaccctaaatggccacaacatgatgtctttttgaacaacaga 4678170  T
Q  210 gtcactaaatttcctaccaattaac 234  Q
     |||||| |  ||||||||||||||    
T  4678169 atcactatacctcctaccaattaac 4678145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 38 - 234
Target Start/End: Original strand, 28220336 - 28220532
Alignment:
Q  38 attccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacact 137  Q
    |||||||| | |||||||||| |||   ||| ||||| || || |||||||||||||| |||||||| ||| |||||||||| |||||||||||||||      
T  28220336 attccaaaaaggcctctgcaatctcacgcatctttgttagaaccatagatgagatttcttcggcacataggtgcttctcctgtcccttgtacttaacaga 28220435  T
Q  138 aatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaac 234  Q
    |||| | |||||||| ||    || | ||| |||||||| |||||||||  |||||| | ||||||||| | ||||||||| |||||||||||||||    
T  28220436 aatcatgggtttgtcgttcgttccggaaatgaccttgaatggccacaactttatatcatcttgaacaacagagtcactaaacttcctaccaattaac 28220532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 234
Target Start/End: Original strand, 43745276 - 43745428
Alignment:
Q  82 atagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggcc 181  Q
    |||||||||||||| |||||||| ||| |||||||||| |||||||||||||||  ||||   ||||||||||| |  || | ||| |||||||||||||    
T  43745276 atagatgagatttcttcggcacataggtgcttctcctgtcccttgtacttaacagaaatcacgggtttgtcattcaatccggaaatgaccttgaacggcc 43745375  T
Q  182 acaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaac 234  Q
    |||||   ||||| ||||||||| | |  ||| |||| |||||||||||||||    
T  43745376 acaacttcatatcattttgaacatcagaatcattaaacttcctaccaattaac 43745428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 84 - 232
Target Start/End: Original strand, 28911013 - 28911161
Alignment:
Q  84 agatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccac 183  Q
    ||||||||||||||| ||||| |    |||||||||| |||||||||| |||   ||| | || |||||||| ||||| ||||| |||||||||||| ||    
T  28911013 agatgagatttcctcagcacataatttcttctcctgatccttgtacttgacagatatcatggggttgtcattgacaccggcaatgaccttgaacggcgac 28911112  T
Q  184 aacagtatatctttttgaacaacggggtcactaaatttcctaccaatta 232  Q
    |||| |  ||| |||||||||||||| |||||||| |||||| ||||||    
T  28911113 aacattgaatcgttttgaacaacgggatcactaaacttcctatcaatta 28911161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University