View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10342_low_46 (Length: 252)
Name: NF10342_low_46
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10342_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 42731746 - 42731508
Alignment:
| Q |
1 |
ctattagtggtagtgtcttgaatgttactacagagagaagattttgtgtaattgagaagattaatgttggagattgatggtgatgatgattgattcatga |
100 |
Q |
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| T |
42731746 |
ctattagtggtagtgtcttgaatgttac---agagagaagattttgtgtaattgagaagattaatgttggagattgatggtgatgatgattgattcatga |
42731650 |
T |
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| Q |
101 |
ggtgaaaatatggatcttggataaaccttggtttctttcttggaggtgtgaatggtgagagattgaaatttggcatgtttgagactaattcaactaacca |
200 |
Q |
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| T |
42731649 |
ggtgaaaatatggatcttggataaaccttggtttctttcttggaggtgtgaatggtgagagattgaaatttggcatgtttgagactaattcaactaacca |
42731550 |
T |
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| Q |
201 |
agggtttacacatttcacattttgaagtaaatctggttcatc |
242 |
Q |
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| T |
42731549 |
agggtttacacatttcacattttgaagtaaatctggttcatc |
42731508 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 40351217 - 40351285
Alignment:
| Q |
174 |
catgtttgagactaattcaactaaccaagggtttacacatttcacattttgaagtaaatctggttcatc |
242 |
Q |
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| T |
40351217 |
catgtttgataccaattcaaccaaccatggacttactcgcttcacattgtgaagtaaatctggttcatc |
40351285 |
T |
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