View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10342_low_47 (Length: 252)
Name: NF10342_low_47
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10342_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 3 - 242
Target Start/End: Original strand, 32836055 - 32836294
Alignment:
| Q |
3 |
tttcagttttggtataatcgtcgcaggacatgatcactattggcattggtttagcaatttaaagcacatgttacacacgagaagctaaaccaaattcaca |
102 |
Q |
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| T |
32836055 |
tttcaggtttggtataatcgtcgtaggacatgatcactattggcattggtttagcaatttaaagcacatgttacacacgagaagttaaaccaaattcaca |
32836154 |
T |
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| Q |
103 |
agttgtggcaaattttttgcctttatttcattgaggccattaccagacatagacattgtttcttttgttttctgtatgttgattccccccannnnnnnng |
202 |
Q |
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| T |
32836155 |
agttgtggcaaattttttgaccttatttcattgaggccattaccagacatagacattgtttcttttgttttctgtatgttgattacccccattttttttg |
32836254 |
T |
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| Q |
203 |
ttagcattaccgccacttcgacatggatatagttcctttg |
242 |
Q |
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| T |
32836255 |
ttagcattaccgccacttcgacatggatatagttcctttg |
32836294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 3 - 143
Target Start/End: Original strand, 32842181 - 32842321
Alignment:
| Q |
3 |
tttcagttttggtataatcgtcgcaggacatgatcactattggcattggtttagcaatttaaagcacatgttacacacgagaagctaaaccaaattcaca |
102 |
Q |
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| T |
32842181 |
tttcaggtttggtataatcgtcgtaggacatgatcactattggcattggtttagcaatttaaagcacatgttacacacgagaagctaaaccaaattcaca |
32842280 |
T |
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| Q |
103 |
agttgtggcaaattttttgcctttatttcattgaggccatt |
143 |
Q |
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| T |
32842281 |
agttgtggcgaattttttgaccttatttcatcgaggtcatt |
32842321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 242
Target Start/End: Original strand, 32842456 - 32842538
Alignment:
| Q |
160 |
gtttcttttgttttctgtatgttgattccccccannnnnnnngttagcattaccgccacttcgacatggatatagttcctttg |
242 |
Q |
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||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
32842456 |
gtttcttttgttttctgtatgttgattacccccattttttttgttagcattaccaccacttcgacatggatatagttcctttg |
32842538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 32842344 - 32842398
Alignment:
| Q |
139 |
ccattaccagacatagacattgtttcttttgttttctgtatgttgattcccccca |
193 |
Q |
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| T |
32842344 |
ccattaccagacatagacatcatttcttttgttttctgtatgttgattaccccca |
32842398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 119
Target Start/End: Complemental strand, 19374868 - 19374796
Alignment:
| Q |
47 |
attggtttagcaatttaaagcacatgttacacacgagaagctaaaccaaattcacaagttgtggcaaattttt |
119 |
Q |
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| T |
19374868 |
attggtttagaaacttcaagcacatgtcacccataagaagctaaaccaaattcacaagctgtcgcgaattttt |
19374796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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