View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10342_low_53 (Length: 247)
Name: NF10342_low_53
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10342_low_53 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 14 - 232
Target Start/End: Original strand, 5387549 - 5387767
Alignment:
| Q |
14 |
caaaggaaaagcagagttggactactctgacatcttgtttataaggtcaaatattatacattagttcattttattcctcttttgcgacaataatatttct |
113 |
Q |
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| T |
5387549 |
caaaggaaaagcagagttggactactctgacatcttgtttataaggtcaaatattatacattagttcattttattcctcttttgcgacaataatatttct |
5387648 |
T |
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| Q |
114 |
agaacgtaacaacaaatacacacctcacagctacatgggggttcatacggatcatctatccctgtgaaacctgcagatttccaaatagataattcactac |
213 |
Q |
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| T |
5387649 |
agaacgtaacaacaaatacacacctcacagctacatgggggttcatacggatcatctatccctgtgaaacctgcagatttccaaatagataattcactac |
5387748 |
T |
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| Q |
214 |
tggtgcacagatcaatctg |
232 |
Q |
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| T |
5387749 |
tggtgcacagatcaatctg |
5387767 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 39965098 - 39965040
Alignment:
| Q |
127 |
aaatacacacctcacagctacatgggggttcatacggatcatctatccctgtgaaacct |
185 |
Q |
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| T |
39965098 |
aaatacaaacctcacagcaacaaggtggttcatatggatcatctataccagtgaaacct |
39965040 |
T |
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