View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10342_low_57 (Length: 240)
Name: NF10342_low_57
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10342_low_57 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 51368219 - 51367997
Alignment:
| Q |
18 |
tggtctgtattttttactcgaaggatgtgcgtgaattagtgcaatgacaacatctagtaaattagatccttcttccagtagcctggatagaccactgcac |
117 |
Q |
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| T |
51368219 |
tggtctgtattttttactcgaaggatgtgcgtgaattagtgcaatgacaacatctagtaaattagatccatcttccagtagcctggatagaccactgcac |
51368120 |
T |
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| Q |
118 |
attgcgcagcatggatccaacatagctgcttcattagatagatcaggtaggtttcgagaatgcatgaaaaatccatttttgtcttctctgcccactatgt |
217 |
Q |
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| T |
51368119 |
attgcgcagcatggatccaacatagctgcttcattagatagatcaggtaggtttcgagaatgcatgaaaaatccatttttgtcttctctgcccactatgt |
51368020 |
T |
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| Q |
218 |
tgagaagtagtgaagtagatctc |
240 |
Q |
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| T |
51368019 |
tgagaagtagtgaagtagatctc |
51367997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 37 - 228
Target Start/End: Complemental strand, 52236930 - 52236739
Alignment:
| Q |
37 |
gaaggatgtgcgtgaattagtgcaatgacaacatctagtaaattagatccttcttccagtagcctggatagaccactgcacattgcgcagcatggatcca |
136 |
Q |
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| T |
52236930 |
gaaggatgtgtgtgaactagtacaatggcaacatctagtaagtttgatgcatcttccagtagcccggatagacctctgtacgctgcgcagcgtggatcca |
52236831 |
T |
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| Q |
137 |
acatagctgcttcattagatagatcaggtaggtttcgagaatgcatgaaaaatccatttttgtcttctctgcccactatgttgagaagtagt |
228 |
Q |
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| T |
52236830 |
acatagctgcttcattagatagatcaggtagctttcgagaatgcatggaaaatccaattttgtcttctctgcccaacatgttgagaagtagt |
52236739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 130 - 206
Target Start/End: Original strand, 17751084 - 17751160
Alignment:
| Q |
130 |
ggatccaacatagctgcttcattagatagatcaggtaggtttcgagaatgcatgaaaaatccatttttgtcttctct |
206 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||| ||| |||| |||||||| ||||||| ||||| |
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| T |
17751084 |
ggatcccacatagctgcttcattagatagatcaggtagctttcgtgaaggcatagaaaatccaattttgtcctctct |
17751160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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