View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10342_low_59 (Length: 238)
Name: NF10342_low_59
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10342_low_59 |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 5986196 - 5986402
Alignment:
| Q |
18 |
atttgttctcaatatttaattctattgtaatattctttttgatgtggtaaatcagaagattcttattgaatgtgcttccatttcccacacttcatatcct |
117 |
Q |
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| T |
5986196 |
atttgttctcaatatttaattctattgtaatattctttttgatgtggtaaatcagaagattcttattgaatgtgcttccatttcccacacttcatatcct |
5986295 |
T |
|
| Q |
118 |
tcataagaaattgtatgcacaaatttactttcaacacatcaacaaaccatgcactcctcaaatcctctagagctaaaaagctaaatgcataatagccatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5986296 |
tcataagaaattgtatgcacaaatttactttcaacacatcaacaaaccatgcactcctcaaatcctctagagctaaaaagctaaatgcataatagccatt |
5986395 |
T |
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| Q |
218 |
tcctatg |
224 |
Q |
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||||||| |
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| T |
5986396 |
tcctatg |
5986402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 130 - 223
Target Start/End: Original strand, 5970320 - 5970413
Alignment:
| Q |
130 |
gtatgcacaaatttactttcaacacatcaacaaaccatgcactcctcaaatcctctagagctaaaaagctaaatgcataatagccatttcctat |
223 |
Q |
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||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
5970320 |
gtatgcacaaatttacttttaacacatcaacaacccatacactcctcaaatcctctagaactacaaagctaaatgcataatagccatttcctat |
5970413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 130 - 223
Target Start/End: Complemental strand, 8713814 - 8713721
Alignment:
| Q |
130 |
gtatgcacaaatttactttcaacacatcaacaaaccatgcactcctcaaatcctctagagctaaaaagctaaatgcataatagccatttcctat |
223 |
Q |
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| T |
8713814 |
gtatgcacaaatttacttttaacacatcaacaacccatacacttctcaaatcctctagaactataaagctaaatgcataatagccatttcctat |
8713721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 8714487 - 8714382
Alignment:
| Q |
18 |
atttgttctcaatatttaattctattgtaatattctttttgatgtggtaaatcagaagattcttattgaatgtgcttccatttcccacacttcatatcct |
117 |
Q |
| |
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||||||| ||||||||||||||| ||||||||| | ||| |||| |||||| || |||||||||||||||| ||||||||||| |||||||||||| |
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| T |
8714487 |
atttgttgtcaatatttaattctcttgtaatatgatctttaatgttgtaaatgtagaggttcttattgaatgtgcctccatttcccagacttcatatcct |
8714388 |
T |
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| Q |
118 |
tcataa |
123 |
Q |
| |
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| |||| |
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|
| T |
8714387 |
ttataa |
8714382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 5969660 - 5969765
Alignment:
| Q |
18 |
atttgttctcaatatttaattctattgtaatattctttttgatgtggtaaatcagaagattcttattgaatgtgcttccatttcccacacttcatatcct |
117 |
Q |
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||||||| ||||||||||||||| ||||||||| | ||| ||| |||||| || |||||||||||||||| ||||||||||| |||||||||||| |
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| T |
5969660 |
atttgttgtcaatatttaattctcttgtaatatgatctttattgttgtaaatgtagaggttcttattgaatgtgcctccatttcccagacttcatatcct |
5969759 |
T |
|
| Q |
118 |
tcataa |
123 |
Q |
| |
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| |||| |
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|
| T |
5969760 |
ttataa |
5969765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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