View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10342_low_62 (Length: 235)
Name: NF10342_low_62
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10342_low_62 |
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Alignment Details
Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 15 - 116
Target Start/End: Original strand, 35177237 - 35177338
Alignment:
| Q |
15 |
cagagatccaatatttgacattaaaatatgacttaaagattttgttagtattataatgaaacaggtcattaacagccacctgtccttccaaaccatactt |
114 |
Q |
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| T |
35177237 |
cagagatccaatatttgacattaaaatatgacttaaagattttgttagtattataatgaaacaggttattaacagccacctgttcttccaaatcatactt |
35177336 |
T |
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| Q |
115 |
gt |
116 |
Q |
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| T |
35177337 |
gt |
35177338 |
T |
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Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 116
Target Start/End: Original strand, 42909950 - 42910049
Alignment:
| Q |
15 |
cagagatccaatatttgacattaaaatatgacttaaagattttgttagtattataatgaaacaggtcattaacagccacctgtccttccaaaccatactt |
114 |
Q |
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| T |
42909950 |
cagacatctaatatttgacattaaaatatgatttag-gatttt-ttactattataatgaaacaggtcaagaacatccacctgtccttccaaaccatactt |
42910047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 52544379 - 52544335
Alignment:
| Q |
132 |
tctaaggattggttgattaaaggttgtagtagcttgttaattaag |
176 |
Q |
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| T |
52544379 |
tctaaggattggttgattaaaggttgtagtagcttgttaattaag |
52544335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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