View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10342_low_65 (Length: 221)
Name: NF10342_low_65
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10342_low_65 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 26017612 - 26017422
Alignment:
| Q |
19 |
gttaaggcctcagcaagacctcctctacttatgacagcgcgacaatcgcctgcattggacacaacaaggttaccattcctaataaatgctgttacgcagc |
118 |
Q |
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| T |
26017612 |
gttaaggcctcagcaacacctcctctactgatgacagcgcgacaatcgcctgcattggacacaacaaggttaccattcctaataaatgctgttacacagc |
26017513 |
T |
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| Q |
119 |
aagagccaccattaagatcctcttttaagaaatctgaatctgttttgaggtaaccatgcttcactgcttcctcaatatcactttcatctct |
209 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26017512 |
aagagccaccattaagatcttcttttaagaaatctgaatctgttttgaggtaaccatgcttcactgcttcctcaatatcactttcatctct |
26017422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 49 - 209
Target Start/End: Complemental strand, 26002770 - 26002610
Alignment:
| Q |
49 |
atgacagcgcgacaatcgcctgcattggacacaacaaggttaccattcctaataaatgctgttacgcagcaagagccaccattaagatcctcttttaaga |
148 |
Q |
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| T |
26002770 |
atgacagcacgacaatcaccggcattggacataacaaggttgccatttctaattaatgctgttacacagcaagaaccaccattaagatcttcttttaaga |
26002671 |
T |
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| Q |
149 |
aatctgaatctgttttgaggtaaccatgcttcactgcttcctcaatatcactttcatctct |
209 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
26002670 |
aatctgaatctgttttgaggtaaccatgtttcactgcttcctcaatatcactctcatctct |
26002610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 198
Target Start/End: Complemental strand, 30374124 - 30373951
Alignment:
| Q |
25 |
gcctcagcaagacctcctctacttatgacagcgcgacaatcgcctgcattggacacaacaaggttaccattcctaataaatgctgttacgcagcaagagc |
124 |
Q |
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|||||||||| ||||||||||| || ||||| || ||||| || ||||| |||||||| | ||||||||||||||| |||||||| || || ||||| | |
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| T |
30374124 |
gcctcagcaacccctcctctactaataacagcacggcaatcaccagcattagacacaactaagttaccattcctaatgaatgctgtcacacaacaagaac |
30374025 |
T |
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| Q |
125 |
caccattaagatcctcttttaagaaatctgaatctgttttgaggtaaccatgcttcactgcttcctcaatatca |
198 |
Q |
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|||||| ||||| | ||| | ||| || ||||| || ||||||||||| |||||||||| ||||||| |||| |
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| T |
30374024 |
caccatgtagatcttttttcatgaactcagaatcggtattgaggtaaccgcgcttcactgcctcctcaacatca |
30373951 |
T |
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