View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10342_low_70 (Length: 209)
Name: NF10342_low_70
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10342_low_70 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 21 - 192
Target Start/End: Original strand, 41440978 - 41441148
Alignment:
| Q |
21 |
aacgtggtggccaagatttgagtgttatgtggttgaaggaagaaactaggaaatgtgacaaaaacgattcaaagagacaacaagaacaaggttcatgttt |
120 |
Q |
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| T |
41440978 |
aacgtggtggccaagatttgagtgttatgtggttgaaggaagaaactaggaaatgtgactaaaacgattcaaagagacaacaagaacaaggttcatgttt |
41441077 |
T |
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| Q |
121 |
tttcactactatgaagagtgaaaataattgtagaattttcaacatcatatactacaaaaaatacaactccaa |
192 |
Q |
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| T |
41441078 |
tttcactactatgaagagtg-aaataattgtagaattttcaacatcatatactacaaaaaatgcaactccaa |
41441148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 21 - 141
Target Start/End: Original strand, 41454133 - 41454252
Alignment:
| Q |
21 |
aacgtggtggccaagatttgagtgttatgtggttgaaggaagaaactaggaaatgtgac-aaaaacgattcaaagagacaacaagaacaagg--ttcatg |
117 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||| | || || |
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| T |
41454133 |
aacgtggtagccaagatttgagtgtta-gtggttgaaggaagaaactaggaaatgtgacaaaaaacgattgaaagag---acaagaacaaagatttggtg |
41454228 |
T |
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| Q |
118 |
ttttttcactactatgaagagtga |
141 |
Q |
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| T |
41454229 |
ttttttaactactatgaagagtga |
41454252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 41457247 - 41457293
Alignment:
| Q |
146 |
aattgtagaattttcaacatcatatactacaaaaaatacaactccaa |
192 |
Q |
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| T |
41457247 |
aattgtagaattttcaacatcatatactacaaacaatgcaactccaa |
41457293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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