View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10342_low_73 (Length: 202)

Name: NF10342_low_73
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10342_low_73
NF10342_low_73
[»] chr4 (3 HSPs)
chr4 (1-150)||(44185462-44185611)
chr4 (1-184)||(4875982-4876180)
chr4 (26-127)||(1326462-1326563)
[»] chr3 (1 HSPs)
chr3 (1-184)||(5387574-5387772)
[»] scaffold0831 (2 HSPs)
scaffold0831 (37-125)||(2047-2135)
scaffold0831 (122-184)||(2146-2209)
[»] chr8 (4 HSPs)
chr8 (36-113)||(26531587-26531664)
chr8 (120-171)||(27183114-27183166)
chr8 (120-171)||(27231119-27231171)
chr8 (122-176)||(26531509-26531564)


Alignment Details
Target: chr4 (Bit Score: 138; Significance: 2e-72; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 44185611 - 44185462
Alignment:
Q  1 caaatacagattgaaaccgtctcgaggatgtggtgatatctccttaatatttaggaagagataggtgtgattgtacaatgagcgatgcatagatatgaaa 100  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44185611 caaatacagattggaaccgtctcgaggatgtggcgatatctccttaatatttaggaagagataggtgtgattgtacaatgagcgatgcatagatatgaaa 44185512  T
Q  101 ttggtgcggaacaattgcatgaaataaaagagaccatgatttggagcaca 150  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  44185511 ttggtgtggaacaattgcatgaaataaaagagaccatgatttggagcaca 44185462  T

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Target: chr4; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 4876180 - 4875982
Alignment:
Q  1 caaatacagattgaaaccgtctcgaggatgtggtgatatctccttaatatttaggaagagataggtgtgattgtacaatgagcgatgcatagatatgaaa 100  Q
    ||||||||||||| |||||||||| ||||||||  ||||||||||||||||||| |||||||| ||||||| ||||||||| ||||||||||||||||||    
T  4876180 caaatacagattggaaccgtctcgtggatgtggcaatatctccttaatatttagaaagagataagtgtgatcgtacaatgatcgatgcatagatatgaaa 4876081  T
Q  101 ttggtgcggaacaattgca--------------tgaaataaaagagaccatgatttgga-gcacaagtaaatcgattgagagatttgaggggtaatttg 184  Q
    |||||||||||||  | ||              ||||||||||||||| |||||||||| ||||| ||||||| ||||||||||| |||||||||||||    
T  4876080 ttggtgcggaacatgttcatgaaattagggttttgaaataaaagagacgatgatttggaggcacatgtaaatcaattgagagattggaggggtaatttg 4875982  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 1326563 - 1326462
Alignment:
Q  26 ggatgtggtgatatctccttaatatttaggaagagataggtgtgattgtacaatgagcgatgcatagatatgaaattggtgcggaacaattgcatgaaat 125  Q
    ||||||||  |||||||||| ||||| ||||||||||| |||| |||||||| ||| | |||||||||||||||||||||||| ||||   |||||||||    
T  1326563 ggatgtggcaatatctcctttatattaaggaagagatatgtgtcattgtacagtgaacaatgcatagatatgaaattggtgcgaaacataggcatgaaat 1326464  T
Q  126 aa 127  Q
    ||    
T  1326463 aa 1326462  T

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Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 5387772 - 5387574
Alignment:
Q  1 caaatacagattgaaaccgtctcgaggatgtggtgatatctccttaatatttaggaagagataggtgtgattgtacaatgagcgatgcatagatatgaaa 100  Q
    ||||||||||||| |||| ||| ||||||||||  |||||||||| |||| ||||| |||| |||||||||  |||||||||||||||||| ||||||||    
T  5387772 caaatacagattggaaccatcttgaggatgtggcaatatctcctttatatataggatgagaaaggtgtgatcatacaatgagcgatgcataaatatgaaa 5387673  T
Q  101 ttggtgcggaacaattgcatg--------------aaataaaagagaccatgatttgga-gcacaagtaaatcgattgagagatttgaggggtaatttg 184  Q
    |||||||||||||||||||||              ||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||    
T  5387672 ttggtgcggaacaattgcatgaaattagggttttgaaataaaagagaccaagatttggaggcacaggtaaatcgattgagagatttgaggggtaatttg 5387574  T

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Target: scaffold0831 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: scaffold0831
Description:

Target: scaffold0831; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 37 - 125
Target Start/End: Original strand, 2047 - 2135
Alignment:
Q  37 tatctccttaatatttaggaagagataggtgtgattgtacaatgagcgatgcatagatatgaaattggtgcggaacaattgcatgaaat 125  Q
    ||||||||| ||||||||||| ||| | |||| |||||||||||| ||||||||| ||||||||||| |||| |||| || ||||||||    
T  2047 tatctcctttatatttaggaaaagacatgtgtcattgtacaatgatcgatgcataaatatgaaattgttgcgaaacattttcatgaaat 2135  T

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Target: scaffold0831; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 2146 - 2209
Alignment:
Q  122 aaataaaagagaccatgatttgga-gcacaagtaaatcgattgagagatttgaggggtaatttg 184  Q
    |||||||||||||||||| ||| | |||||||||||||| ||||||||||| || |||| ||||    
T  2146 aaataaaagagaccatgacttgcatgcacaagtaaatcgcttgagagatttaagaggtagtttg 2209  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 26531664 - 26531587
Alignment:
Q  36 atatctccttaatatttaggaagagataggtgtgattgtacaatgagcgatgcatagatatgaaattggtgcggaaca 113  Q
    |||||||||| |||||||| |||||||| ||||  |||||||||||  |||||||||||||||||||  |||||||||    
T  26531664 atatctcctttatatttagaaagagataagtgttgttgtacaatgactgatgcatagatatgaaatttttgcggaaca 26531587  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 120 - 171
Target Start/End: Complemental strand, 27183166 - 27183114
Alignment:
Q  120 tgaaataaaagagaccatgatttgg-agcacaagtaaatcgattgagagattt 171  Q
    ||||||||||||||||||||||||| | ||||||||||||| |||||||||||    
T  27183166 tgaaataaaagagaccatgatttggaaacacaagtaaatcgcttgagagattt 27183114  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 27231119 - 27231171
Alignment:
Q  120 tgaaataaaagagaccatgatttgg-agcacaagtaaatcgattgagagattt 171  Q
    ||||||||||||||||||||||||| | ||||||||||||| |||||||||||    
T  27231119 tgaaataaaagagaccatgatttggaaacacaagtaaatcgcttgagagattt 27231171  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 26531564 - 26531509
Alignment:
Q  122 aaataaaagagaccatgatttgga-gcacaagtaaatcgattgagagatttgaggg 176  Q
    |||||||||||||||||||||| | ||||||||||| || ||||||||||||||||    
T  26531564 aaataaaagagaccatgatttgcacgcacaagtaaaccgcttgagagatttgaggg 26531509  T

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