View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10342_low_9 (Length: 435)
Name: NF10342_low_9
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10342_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 14 - 420
Target Start/End: Original strand, 3651987 - 3652391
Alignment:
| Q |
14 |
ggaccacataacaagagatagctacccacttctagcccaaacaaaaggcatagcttatattttagagaaacttcatatagaaacacagctgattcttgct |
113 |
Q |
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| T |
3651987 |
ggaccacataacaagagatggctagccacttctagccaaaacaaaaagcataccttatattttagagaaacttcatatagaaacacagctgattcttgct |
3652086 |
T |
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| Q |
114 |
ggaaataattgaattgaggtgtatatatattaacctaaacatgtggtcgaagagtagtagggtacaaataaaacctttttattatttattatgaaaagga |
213 |
Q |
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| T |
3652087 |
ggaaataattgaattgaggtgtata--tattaacctaaacatgtggtccaagagtagtagggtacaaataaaacctttttattatttattatgaaaagga |
3652184 |
T |
|
| Q |
214 |
aataccataacaacatttgcaacaccatttatgaaattcatgcatagaaataaaatagctaaatgcaacataacatagtatataatgaggctcaccacta |
313 |
Q |
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| T |
3652185 |
aataccataacaacatttgcaacaccatttatgaaattcatgcatagaaataaaatagctaaatgcaacatagcatagtatataatgaggctcaccacta |
3652284 |
T |
|
| Q |
314 |
tacaattagtggtatagcattgagttacacataacacaaacacaattgtatatatattttgattcttgattaactattaatcaacattatttcatagagt |
413 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3652285 |
tacaattagttgtatagcattgagttacacataacacaaacacaattgtatatatattttgattcttgattaactattaatcaacattatttcatagagt |
3652384 |
T |
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| Q |
414 |
gataagt |
420 |
Q |
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||||||| |
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| T |
3652385 |
gataagt |
3652391 |
T |
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