View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10343_high_1 (Length: 437)
Name: NF10343_high_1
Description: NF10343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10343_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 4e-85; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 133 - 347
Target Start/End: Complemental strand, 45578952 - 45578738
Alignment:
| Q |
133 |
ccccactttttactgcgtataaacaccatttattattgactagttagactaataggtgagaaaaatctggaaagaactttcatctcaaagttctagcttt |
232 |
Q |
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| T |
45578952 |
ccccactttttactgcgtataaacaccatttattattgactagttcgactaataggtgagaaaaatctggaaagaactttcatctcaaagttctagcttt |
45578853 |
T |
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| Q |
233 |
caacaatcacatagaaacnnnnnnnnnnnnnnnnnttagacaagtggttcataattcaaaaagctatgcagagtactcgaaagaaagttgaatgaaattg |
332 |
Q |
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| T |
45578852 |
caacaatcacatagaaacaaaaaataaaatgaaaattagacaagtggttcataattcaaaaagctatgcagagtactcgaaagaaagttgaatgaaattg |
45578753 |
T |
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| Q |
333 |
agaaagtaaataaca |
347 |
Q |
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| T |
45578752 |
agaaagtaaataaca |
45578738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 45579084 - 45579008
Alignment:
| Q |
1 |
taatagtcaaaatagtaccatagaataattcaactgtacaactagcttccagtcagaaagaaaacaaaaactgtagc |
77 |
Q |
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| T |
45579084 |
taatagtcaaaatagtaccatagaataattcaactgtacaactagcttccattcagaaagaaaacaaaaactgtagc |
45579008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 368 - 419
Target Start/End: Complemental strand, 45578705 - 45578654
Alignment:
| Q |
368 |
ttggagagtacattgaagatttgagctttgttgtcagaattccaagccaaac |
419 |
Q |
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| T |
45578705 |
ttggagagtacattgaagatttgagctttgttgtcagaattccaagccaaac |
45578654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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