View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10343_high_2 (Length: 340)
Name: NF10343_high_2
Description: NF10343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10343_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 198 - 334
Target Start/End: Complemental strand, 42206768 - 42206632
Alignment:
| Q |
198 |
attgaatgttgttgaataatcaagaaagaagaataggtatcctagcatgtatcaatgtttcgaaacaaaattaccgtagcaaacaaaaacatttatgttt |
297 |
Q |
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| T |
42206768 |
attgaatgttgttgaataatcaagaaagaagaataggtatcctagcatgtatcaatgtttcgaaacaaaattaccgtagcaaacaaaaacatttatgttt |
42206669 |
T |
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| Q |
298 |
cgaaacattagcgtcaactgagcacggttcttctctc |
334 |
Q |
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| T |
42206668 |
cgaaacattagcgtcaactgagcacggttcttttctc |
42206632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 42206875 - 42206780
Alignment:
| Q |
20 |
atgtatgtgcatcaattcctaccctcaaaattgat-----gttacaaaattcagatgaatgtcactgcaagagtttttgatgttacaaaattgaag |
110 |
Q |
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| T |
42206875 |
atgtatgtgcatcaattcctaccctcaaaattgaacgagggacccaacattcagatgaatgtcactgcaagattttttgatgttacaaaattgaag |
42206780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 42207787 - 42207742
Alignment:
| Q |
177 |
tttctttctttcaagcagaagattgaatgttgttgaataatcaaga |
222 |
Q |
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| T |
42207787 |
tttctttctttcaagcagaagattgaatgttcttgaataatcaaga |
42207742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 42207989 - 42207933
Alignment:
| Q |
105 |
ttgaagcagaagattgaatgttcctgaataattaagaactagaaaacaggtaaccca |
161 |
Q |
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| T |
42207989 |
ttgaagcagaagattgaatgttcttgaataaccaagaacacgaaaataggtaaccca |
42207933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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