View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10343_high_5 (Length: 219)
Name: NF10343_high_5
Description: NF10343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10343_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 65 - 200
Target Start/End: Complemental strand, 8285858 - 8285723
Alignment:
| Q |
65 |
acaaaacacatgttataaggaaaaatacgcaccaggtaatactcagcaccatggtggagcgaatcgagggtaacaccccactcatctgttagaactggag |
164 |
Q |
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| T |
8285858 |
acaaaacacatgttataaggaaaaatacgcaccaggtaatactcagcaccatggtggagcgaatcgagggtaacaccccactcatctgttagaactggag |
8285759 |
T |
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| Q |
165 |
taccagaggagtcaaagagaactgctctatctccaa |
200 |
Q |
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| T |
8285758 |
taccagaggagtcaaagagaactgctctatctccaa |
8285723 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 24969113 - 24969036
Alignment:
| Q |
113 |
ccatggtggagcgaatcgagggtaacaccccactcatctgttagaactggagtaccagaggagtcaaagagaactgct |
190 |
Q |
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| T |
24969113 |
ccatggtggagtgagttgagggggacaccccactcatcggttagaaccggggtaccaaaggagtcaaatagaactgct |
24969036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 194
Target Start/End: Complemental strand, 34687656 - 34687557
Alignment:
| Q |
95 |
accaggtaatactcagcaccatggtggagcgaatcgagggtaacaccccactcatctgttagaactggagtaccagaggagtcaaagagaactgctctat |
194 |
Q |
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| T |
34687656 |
accagataataatcagccccatggtagagtgagttgagggtgacaccccattcatcagttagaaccggggtactgaaggagtcaaacagaactgctctat |
34687557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 200
Target Start/End: Complemental strand, 34697568 - 34697463
Alignment:
| Q |
95 |
accaggtaatactcagcaccatggtggagcgaatcgagggtaacaccccactcatctgttagaactggagtaccagaggagtcaaagagaactgctctat |
194 |
Q |
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| T |
34697568 |
accaggaaataatcaaccccatggtggagtgagttgagtgtgacaccccactcatcggttagaaccgggacaccggaggagtcaagcagaactgctccat |
34697469 |
T |
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| Q |
195 |
ctccaa |
200 |
Q |
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| T |
34697468 |
cgccaa |
34697463 |
T |
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