View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10343_low_2 (Length: 384)
Name: NF10343_low_2
Description: NF10343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10343_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 115 - 374
Target Start/End: Complemental strand, 47620658 - 47620399
Alignment:
| Q |
115 |
gaatagtggactgaatttgtgtttgtgctgtttttagaacattgaggtgtttgaatagcagctgttctgccttttcctattgcctctgatgtttttctgg |
214 |
Q |
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| T |
47620658 |
gaatagtggactgaatttgtgtttgtgctgtttttagaacattgaggtgtttgaatagcagctgctctgtcttttcctcttgcctctgatgtttttctgg |
47620559 |
T |
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| Q |
215 |
tgctgaatctataattttgtactgttagtggagggctgtgatgtgggagtattcatgtattgacctttatgttgcatcattgtttttggttaggggtctt |
314 |
Q |
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| T |
47620558 |
tgctgaatctataattttgtactgttagtggagggctgtgatgtgggagtattcatgtgttgacctttatgttgcatcattgtttttggttaggggtctt |
47620459 |
T |
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| Q |
315 |
gtgtataccttggcatcatgctttagtattggctagtctcttgtttatggggttcctttg |
374 |
Q |
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| T |
47620458 |
gtgtataccttggcatcatgctttagtattggctagtctcttgtttatggggttcctttg |
47620399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 47620756 - 47620716
Alignment:
| Q |
17 |
acttatggtttggtgaagtatttgtataagtttttgtcttg |
57 |
Q |
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| T |
47620756 |
acttatggtttggtgaagtatttgtataagtttttgtcttg |
47620716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 43598700 - 43598740
Alignment:
| Q |
136 |
tttgtgctgtttttagaacattgaggtgtttgaatagcagc |
176 |
Q |
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| T |
43598700 |
tttgtgctgtttttaggccattgaggtgtttgaatagcagc |
43598740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 245 - 373
Target Start/End: Complemental strand, 31198936 - 31198812
Alignment:
| Q |
245 |
gagggctgtgatgtgggagtattcatgtattgacctttatgttgcatcattgtttttggttaggggtcttgtgtataccttggcatcatgctttagtatt |
344 |
Q |
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| T |
31198936 |
gagggctgtgatgtgggagtattcgtgggttgatccttttgttgtat---tgtttt-ggtgagaggtcttatgtataccttggcatcatgcttttgattg |
31198841 |
T |
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| Q |
345 |
ggctagtctcttgtttatggggttccttt |
373 |
Q |
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| T |
31198840 |
ggttagtctcttgtttatagggttccttt |
31198812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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