View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10343_low_3 (Length: 382)

Name: NF10343_low_3
Description: NF10343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10343_low_3
NF10343_low_3
[»] chr3 (39 HSPs)
chr3 (1-268)||(1441427-1441694)
chr3 (44-148)||(3845201-3845305)
chr3 (50-148)||(39256567-39256665)
chr3 (81-148)||(51285451-51285518)
chr3 (70-148)||(52925726-52925804)
chr3 (51-148)||(584888-584985)
chr3 (63-146)||(1290675-1290758)
chr3 (73-148)||(3776431-3776506)
chr3 (50-147)||(5046171-5046268)
chr3 (6-98)||(41115413-41115505)
chr3 (53-120)||(54596738-54596805)
chr3 (78-148)||(34867309-34867379)
chr3 (50-143)||(7717468-7717561)
chr3 (3-142)||(5406804-5406943)
chr3 (49-104)||(8801886-8801941)
chr3 (1-147)||(35058253-35058400)
chr3 (5-150)||(7298366-7298511)
chr3 (1-98)||(32523386-32523484)
chr3 (46-100)||(50321849-50321903)
chr3 (50-147)||(48410907-48411004)
chr3 (1-97)||(7717367-7717462)
chr3 (51-95)||(33548188-33548232)
chr3 (53-109)||(38332635-38332691)
chr3 (47-95)||(43987644-43987692)
chr3 (88-148)||(52363957-52364017)
chr3 (47-141)||(21007732-21007827)
chr3 (1-148)||(35264457-35264604)
chr3 (70-149)||(38022328-38022407)
chr3 (49-100)||(46943111-46943162)
chr3 (50-144)||(829786-829879)
chr3 (51-148)||(2410026-2410124)
chr3 (70-148)||(7262790-7262868)
chr3 (6-63)||(23290269-23290327)
chr3 (1-95)||(40736583-40736677)
chr3 (70-104)||(44958721-44958755)
chr3 (5-62)||(7742193-7742250)
chr3 (50-119)||(12674934-12675003)
chr3 (26-95)||(47356316-47356385)
chr3 (77-145)||(48089819-48089887)
[»] scaffold0168 (1 HSPs)
scaffold0168 (3-148)||(31718-31863)
[»] chr6 (37 HSPs)
chr6 (1-148)||(5724676-5724823)
chr6 (1-148)||(10400741-10400889)
chr6 (1-109)||(1485192-1485301)
chr6 (49-146)||(31812203-31812300)
chr6 (51-148)||(33136579-33136675)
chr6 (1-101)||(765432-765532)
chr6 (2-103)||(26280542-26280643)
chr6 (51-148)||(29240548-29240645)
chr6 (1-148)||(4910800-4910947)
chr6 (73-144)||(34620782-34620853)
chr6 (73-144)||(34748219-34748290)
chr6 (1-94)||(35098504-35098597)
chr6 (20-104)||(2008403-2008487)
chr6 (1-97)||(6654136-6654232)
chr6 (1-117)||(7952755-7952871)
chr6 (73-140)||(33997098-33997165)
chr6 (1-141)||(25195412-25195550)
chr6 (44-106)||(26550453-26550515)
chr6 (56-104)||(2002566-2002614)
chr6 (3-103)||(7280427-7280527)
chr6 (84-148)||(24974107-24974171)
chr6 (70-109)||(31305965-31306004)
chr6 (40-102)||(6653747-6653809)
chr6 (51-145)||(7262966-7263060)
chr6 (3-65)||(16540082-16540144)
chr6 (73-139)||(34063233-34063299)
chr6 (3-142)||(33141754-33141893)
chr6 (44-143)||(579124-579223)
chr6 (50-89)||(2234309-2234348)
chr6 (53-148)||(6896030-6896125)
chr6 (73-148)||(7952444-7952519)
chr6 (53-92)||(18690620-18690659)
chr6 (5-106)||(578864-578965)
chr6 (59-143)||(19601714-19601799)
chr6 (57-118)||(30926881-30926942)
chr6 (51-95)||(957701-957745)
chr6 (53-101)||(1499805-1499853)
[»] chr1 (38 HSPs)
chr1 (1-147)||(6021695-6021843)
chr1 (1-101)||(28083934-28084034)
chr1 (70-148)||(15478116-15478194)
chr1 (32-148)||(49079291-49079407)
chr1 (50-109)||(24587840-24587899)
chr1 (50-145)||(31117370-31117465)
chr1 (51-145)||(32088669-32088763)
chr1 (50-144)||(41516883-41516977)
chr1 (5-145)||(12655139-12655280)
chr1 (15-104)||(47321966-47322055)
chr1 (37-109)||(37131865-37131937)
chr1 (50-105)||(49824824-49824879)
chr1 (86-148)||(20721046-20721108)
chr1 (51-101)||(47892484-47892534)
chr1 (50-93)||(646127-646170)
chr1 (1-84)||(3016119-3016201)
chr1 (50-109)||(9939823-9939882)
chr1 (51-145)||(18325187-18325281)
chr1 (21-95)||(37522976-37523050)
chr1 (51-148)||(3819566-3819663)
chr1 (73-142)||(8381882-8381951)
chr1 (1-42)||(11049248-11049289)
chr1 (87-147)||(8130851-8130911)
chr1 (68-148)||(45660862-45660941)
chr1 (70-109)||(6041623-6041662)
chr1 (1-109)||(31362251-31362355)
chr1 (75-145)||(6744536-6744606)
chr1 (73-103)||(20720753-20720783)
chr1 (1-103)||(34387739-34387841)
chr1 (3-104)||(36780164-36780266)
chr1 (1-35)||(51500880-51500914)
chr1 (7-96)||(1514288-1514376)
chr1 (47-103)||(14515375-14515432)
chr1 (53-109)||(2099784-2099840)
chr1 (84-148)||(14105035-14105099)
chr1 (73-105)||(23052399-23052431)
chr1 (73-109)||(30557447-30557483)
chr1 (80-148)||(52013602-52013670)
[»] chr8 (34 HSPs)
chr8 (3-99)||(32927833-32927929)
chr8 (26-148)||(35495152-35495274)
chr8 (27-99)||(42455853-42455925)
chr8 (1-104)||(37684341-37684444)
chr8 (46-145)||(7533696-7533791)
chr8 (50-148)||(41614736-41614834)
chr8 (50-109)||(8252728-8252786)
chr8 (46-148)||(4554226-4554328)
chr8 (44-106)||(5997372-5997434)
chr8 (52-145)||(39648242-39648335)
chr8 (1-145)||(44141096-44141247)
chr8 (26-145)||(8700754-8700870)
chr8 (1-84)||(26100192-26100276)
chr8 (8-103)||(7644502-7644596)
chr8 (5-95)||(11791783-11791874)
chr8 (1-104)||(13384700-13384803)
chr8 (51-146)||(32056259-32056353)
chr8 (50-99)||(12742227-12742276)
chr8 (40-145)||(24776178-24776283)
chr8 (1-114)||(26668478-26668591)
chr8 (76-148)||(30251630-30251702)
chr8 (53-101)||(32994322-32994370)
chr8 (86-146)||(34732038-34732098)
chr8 (76-148)||(36448006-36448078)
chr8 (60-147)||(4554399-4554486)
chr8 (53-100)||(18355928-18355975)
chr8 (81-148)||(28445024-28445091)
chr8 (50-148)||(38875358-38875456)
chr8 (52-98)||(4336343-4336389)
chr8 (81-143)||(5218993-5219055)
chr8 (47-100)||(7720117-7720170)
chr8 (71-148)||(32767275-32767352)
chr8 (1-101)||(38868436-38868537)
chr8 (1-101)||(36200178-36200278)
[»] chr5 (35 HSPs)
chr5 (1-144)||(34250397-34250540)
chr5 (53-147)||(3043102-3043196)
chr5 (51-147)||(15368136-15368232)
chr5 (1-104)||(6951351-6951453)
chr5 (46-148)||(29922786-29922888)
chr5 (44-133)||(10898629-10898718)
chr5 (53-145)||(39097159-39097251)
chr5 (50-152)||(37121473-37121575)
chr5 (3-147)||(18851130-18851274)
chr5 (1-108)||(14299262-14299369)
chr5 (3-148)||(22226284-22226429)
chr5 (5-105)||(42439667-42439768)
chr5 (6-97)||(10860405-10860497)
chr5 (76-147)||(10859942-10860013)
chr5 (3-102)||(11648020-11648119)
chr5 (70-145)||(28973753-28973828)
chr5 (44-146)||(10161720-10161822)
chr5 (40-142)||(13224704-13224805)
chr5 (50-100)||(43012677-43012727)
chr5 (55-108)||(7667982-7668035)
chr5 (16-148)||(5468666-5468797)
chr5 (1-57)||(9818717-9818773)
chr5 (53-101)||(25548457-25548505)
chr5 (3-99)||(31906200-31906296)
chr5 (50-109)||(1105370-1105429)
chr5 (88-147)||(38845644-38845703)
chr5 (49-118)||(11911903-11911972)
chr5 (59-96)||(15955447-15955484)
chr5 (53-109)||(370808-370864)
chr5 (51-99)||(6949623-6949671)
chr5 (56-140)||(16016879-16016963)
chr5 (70-106)||(16293997-16294033)
chr5 (13-97)||(27374349-27374433)
chr5 (50-148)||(32980437-32980534)
chr5 (77-109)||(39514830-39514862)
[»] chr4 (47 HSPs)
chr4 (1-104)||(35064999-35065102)
chr4 (50-148)||(2635055-2635153)
chr4 (8-98)||(25318989-25319080)
chr4 (53-148)||(49138933-49139028)
chr4 (5-94)||(33560620-33560710)
chr4 (50-150)||(1099726-1099826)
chr4 (7-144)||(16551853-16551990)
chr4 (40-109)||(26617712-26617781)
chr4 (50-146)||(32680655-32680752)
chr4 (75-148)||(24338492-24338566)
chr4 (1-85)||(32818416-32818500)
chr4 (50-145)||(41058821-41058916)
chr4 (53-104)||(42152979-42153030)
chr4 (76-145)||(39438683-39438752)
chr4 (7-84)||(43868092-43868169)
chr4 (1-145)||(50061674-50061825)
chr4 (1-108)||(9064162-9064270)
chr4 (1-101)||(33456313-33456413)
chr4 (1-148)||(2326857-2327004)
chr4 (53-144)||(21691318-21691409)
chr4 (70-145)||(45329741-45329816)
chr4 (1-104)||(46344878-46344980)
chr4 (78-148)||(55085125-55085196)
chr4 (46-96)||(2174297-2174347)
chr4 (3-120)||(9134529-9134647)
chr4 (50-144)||(20712546-20712640)
chr4 (52-146)||(32100192-32100286)
chr4 (49-109)||(12926822-12926880)
chr4 (5-94)||(35423128-35423217)
chr4 (75-148)||(50358134-50358207)
chr4 (49-109)||(25318749-25318808)
chr4 (76-148)||(43075955-43076027)
chr4 (70-148)||(17898359-17898437)
chr4 (50-97)||(22683806-22683853)
chr4 (44-95)||(37353391-37353442)
chr4 (44-95)||(37365365-37365416)
chr4 (2-148)||(54705437-54705584)
chr4 (1-141)||(8330013-8330155)
chr4 (5-101)||(11271587-11271685)
chr4 (53-95)||(29728947-29728989)
chr4 (51-148)||(47596391-47596489)
chr4 (7-100)||(29779106-29779199)
chr4 (51-148)||(47315092-47315189)
chr4 (51-142)||(471963-472055)
chr4 (3-63)||(30889764-30889824)
chr4 (72-148)||(31013850-31013926)
chr4 (13-93)||(33347228-33347308)
[»] chr2 (39 HSPs)
chr2 (73-148)||(7629754-7629829)
chr2 (40-109)||(15928519-15928588)
chr2 (1-148)||(6327115-6327257)
chr2 (1-109)||(2002741-2002849)
chr2 (21-109)||(37420263-37420351)
chr2 (21-136)||(1976931-1977046)
chr2 (70-145)||(9943318-9943393)
chr2 (1-104)||(42740913-42741016)
chr2 (73-148)||(42982446-42982521)
chr2 (29-139)||(16013785-16013895)
chr2 (73-139)||(40582650-40582716)
chr2 (50-148)||(3476525-3476625)
chr2 (26-141)||(680348-680469)
chr2 (1-103)||(12036998-12037100)
chr2 (1-83)||(31453340-31453422)
chr2 (50-100)||(36987207-36987257)
chr2 (50-95)||(7630361-7630406)
chr2 (3-104)||(16518715-16518816)
chr2 (5-109)||(37561638-37561742)
chr2 (86-138)||(16519348-16519400)
chr2 (53-100)||(43501083-43501130)
chr2 (40-145)||(7630055-7630159)
chr2 (50-103)||(33502944-33502997)
chr2 (50-95)||(44148518-44148563)
chr2 (76-140)||(37649595-37649659)
chr2 (3-35)||(43501130-43501162)
chr2 (75-147)||(43717235-43717307)
chr2 (50-109)||(16488277-16488336)
chr2 (2-101)||(30503148-30503247)
chr2 (50-109)||(42906966-42907025)
chr2 (1-103)||(3352013-3352115)
chr2 (86-148)||(3654724-3654786)
chr2 (6-99)||(11510894-11510988)
chr2 (71-145)||(37745995-37746069)
chr2 (78-148)||(42774958-42775028)
chr2 (50-119)||(44670989-44671058)
chr2 (46-94)||(10280683-10280731)
chr2 (53-145)||(33047650-33047742)
chr2 (71-119)||(44439171-44439219)
[»] chr7 (26 HSPs)
chr7 (53-143)||(38123746-38123836)
chr7 (50-107)||(12306667-12306724)
chr7 (53-118)||(17111797-17111862)
chr7 (50-104)||(12306913-12306967)
chr7 (50-148)||(15050185-15050282)
chr7 (50-119)||(45004906-45004975)
chr7 (10-93)||(24951156-24951239)
chr7 (8-109)||(36270911-36271012)
chr7 (1-100)||(40491518-40491617)
chr7 (81-147)||(598071-598137)
chr7 (76-148)||(883345-883418)
chr7 (76-148)||(1242674-1242747)
chr7 (53-98)||(41788260-41788305)
chr7 (50-95)||(45004965-45005010)
chr7 (51-109)||(5267774-5267834)
chr7 (3-95)||(5489894-5489986)
chr7 (49-117)||(7087386-7087454)
chr7 (1-120)||(22195784-22195903)
chr7 (50-100)||(18228105-18228155)
chr7 (49-135)||(22310760-22310846)
chr7 (8-109)||(26984533-26984635)
chr7 (53-103)||(28430288-28430338)
chr7 (53-95)||(48158836-48158878)
chr7 (70-147)||(48253061-48253136)
chr7 (79-148)||(46325567-46325636)
chr7 (1-105)||(27571797-27571901)
[»] scaffold0314 (1 HSPs)
scaffold0314 (73-144)||(17322-17393)
[»] scaffold0361 (1 HSPs)
scaffold0361 (21-148)||(14179-14306)
[»] scaffold0024 (1 HSPs)
scaffold0024 (5-104)||(23643-23742)
[»] scaffold0393 (1 HSPs)
scaffold0393 (50-145)||(12402-12498)


Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 1441427 - 1441694
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  1441427 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagaaaccaaacatgtcaaactcaattctaca 1441526  T
Q  101 cctctagaaataattttggttactccaaaagtggaaccaaacatacacgaagcatgtggggatacctggggttagcggtgtcaaaagttgaaatggttcg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  1441527 cctctagaaataattttggttactccaaaagtggaaccaaacatacacgaagcatgtgggggtacctggggttagcggtgtcaaaggttgaaatggttcg 1441626  T
Q  201 atttttgggagnnnnnnnccgaaccaataaaaactagtttgtttggtttgatttttgcaatatttttt 268  Q
    |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1441627 atttttgggagaaaaaaaccgaaccaataaaaactagtttgtttggtttgatttttgcaatatttttt 1441694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 44 - 148
Target Start/End: Original strand, 3845201 - 3845305
Alignment:
Q  44 tagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaaca 143  Q
    ||||| || |||||||||||||  | | ||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  3845201 tagaggcagaatcaattctacttgagatcaaacaaacatgtcaaaatcaattctacacctctagaatcaattttggttactccaaaagtggaaccaaaca 3845300  T
Q  144 tacac 148  Q
    |||||    
T  3845301 tacac 3845305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 39256665 - 39256567
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    |||| |||||||||||  | || || |||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||| ||||    
T  39256665 caaagtcaattctacttgagagtaatcaaacatgtcaaaatcaattctacacctctagaactaattttgatttctccaaaagtggaaccaaacacacac 39256567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 81 - 148
Target Start/End: Complemental strand, 51285518 - 51285451
Alignment:
Q  81 atgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    ||||||||||||||||||||||||||||| |||||| || ||||| ||||||||||||||||||||||    
T  51285518 atgtcaaaatcaattctacacctctagaattaatttcggctactcaaaaagtggaaccaaacatacac 51285451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 70 - 148
Target Start/End: Original strand, 52925726 - 52925804
Alignment:
Q  70 agcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    |||||||||||||||||||||||||| |||||||||||||  |||||||  | |||||||||||||||| |||||||||    
T  52925726 agcaaccaaacatgtcaaaatcaattatacacctctagaatcaattttgactcctccaaaagtggaaccgaacatacac 52925804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 51 - 148
Target Start/End: Original strand, 584888 - 584985
Alignment:
Q  51 aaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    |||| ||||||| ||| | || ||| |||||| |||||||||| ||| |||||||||||  ||||||||||||||||||||||| |||||||||||||    
T  584888 aaaaccaattcttctctagaggaacaaaacatatcaaaatcaactctgcacctctagaatcaattttggttactccaaaagtgggaccaaacatacac 584985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 146
Target Start/End: Complemental strand, 1290758 - 1290675
Alignment:
Q  63 actcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatac 146  Q
    |||||| ||||||||||||  ||||||||||||||||||||||||||  |||||| ||| ||| | ||||||||||||||||||    
T  1290758 actcaatagcaaccaaacaaatcaaaatcaattctacacctctagaatcaattttagttcctctagaagtggaaccaaacatac 1290675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 3776506 - 3776431
Alignment:
Q  73 aaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    |||||||||||||||||||||||||||||||||| ||  |||||||  | ||||||||||||||||||| ||||||    
T  3776506 aaccaaacatgtcaaaatcaattctacacctctataaccaattttgtctcctccaaaagtggaaccaaatatacac 3776431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 50 - 147
Target Start/End: Original strand, 5046171 - 5046268
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacataca 147  Q
    ||||||||| ||||||| |||| || ||||||| |||||||||||| |||||||||||||  ||  || | | |||||||||||||||||||||||||    
T  5046171 caaaatcaactctactctaaagaaatcaaacatatcaaaatcaattttacacctctagaatcaacattagctcctccaaaagtggaaccaaacataca 5046268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 98
Target Start/End: Original strand, 41115413 - 41115505
Alignment:
Q  6 caaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattcta 98  Q
    |||||||||||||| |||| |||||||||| || ||| || |  ||||||||||||||||  ||| || |||||||||||||||||| |||||    
T  41115413 caaaagctacaaattctagcttcaagtagaatcaattctacaagcaaaatcaattctactttaaaacatccaaacatgtcaaaatcagttcta 41115505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 120
Target Start/End: Complemental strand, 54596805 - 54596738
Alignment:
Q  53 aatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggt 120  Q
    |||||||||||||  ||| ||||||||||||||| |||||||| |||||||||| || ||||||||||    
T  54596805 aatcaattctacttgaaaacaaccaaacatgtcataatcaattttacacctctaaaattaattttggt 54596738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 34867309 - 34867379
Alignment:
Q  78 aacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    |||||||||||||||||||||||||| |||||  ||||| || | ||  ||||||||||||||||||||||    
T  34867309 aacatgtcaaaatcaattctacacctgtagaatcaatttcggcttctgtaaaagtggaaccaaacatacac 34867379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 143
Target Start/End: Original strand, 7717468 - 7717561
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaaca 143  Q
    |||||||||||||||||   || ||||||||||||||||||||| |||| ||||||| ||  |||||| | |  | ||||||||||||||||||    
T  7717468 caaaatcaattctactctggaggaaccaaacatgtcaaaatcaactctaaacctctacaatcaattttagctcatgcaaaagtggaaccaaaca 7717561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 142
Target Start/End: Complemental strand, 5406943 - 5406804
Alignment:
Q  3 aatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacc 102  Q
    ||||| ||||||| | | |||| ||| |||||| || ||| ||||| ||||||||||| ||||  | || |||||||||    ||||||||||||| |||    
T  5406943 aatcagaagctaccatttctagcttcgagtagaatccattctagaggcaaaatcaattatactttagaggaaccaaacacagaaaaatcaattctagacc 5406844  T
Q  103 tctagaaataattttggttactccaaaagtggaaccaaac 142  Q
    |||||||  | |||||| | ||||||||||||||| ||||    
T  5406843 tctagaatcatttttggctcctccaaaagtggaactaaac 5406804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 8801941 - 8801886
Alignment:
Q  49 acaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctc 104  Q
    |||||||||| ||||||||| | ||||||||||||| |||||||||| ||||||||    
T  8801941 acaaaatcaaatctactcaacaccaaccaaacatgtgaaaatcaattatacacctc 8801886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 35058400 - 35058253
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    |||||||||||||  || | |||| | |||||||| || ||| | ||| ||||||||||||||||| | ||| | ||||||||| | || || |||||||    
T  35058400 agaatcaaaagctcgaatttctagctccaagtagaatcaattcttgaggcaaaatcaattctactcgagagccatcaaacatgtgagaaacagttctaca 35058301  T
Q  101 cctctagaa-ataattttggttactccaaaagtggaaccaaacataca 147  Q
     ||||||||   |||||||||  ||||| ||||| |||||||||||||    
T  35058300 tctctagaatccaattttggtccctccagaagtgaaaccaaacataca 35058253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 150
Target Start/End: Original strand, 7298366 - 7298511
Alignment:
Q  5 tcaaaagctacaaatcctagtttcaagt-agagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacct 103  Q
    |||||| ||||||||||||| ||||||| ||| |||||| | ||||||| |||||| || |||   |||| || ||||||| || ||||||| |||| ||    
T  7298366 tcaaaaactacaaatcctagcttcaagttagaatcgattctggagacaacatcaat-ctgctcgtgagcatccgaacatgtaaatatcaattttacaact 7298464  T
Q  104 ctagaaataattttggttactccaaaagtggaaccaaacatacacga 150  Q
    ||||||  |||| || || ||| ||| ||||||||||||||| ||||    
T  7298465 ctagaatcaattatgattcctcaaaacgtggaaccaaacatagacga 7298511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 32523386 - 32523484
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttc-aagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattcta 98  Q
    |||||||||||||||||||||||  ||| |||||||    ||||| ||| ||||||| ||| ||||| |||||||||||||| |||  |||||||||||    
T  32523386 agaatcaaaagctacaaatcctaacttccaagtagaaataattatggaggcaaaatctattttactcgaaagcaaccaaacaagtctgaatcaattcta 32523484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 50321849 - 50321903
Alignment:
Q  46 gagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    |||||||||| ||||||||| |||| ||||||||||||||| ||| |||||||||    
T  50321849 gagacaaaattaattctactaaaaaacaaccaaacatgtcagaattaattctaca 50321903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 147
Target Start/End: Original strand, 48410907 - 48411004
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacataca 147  Q
    ||||||||||||||||| ||||||| ||||||| ||| ||||||||| |||| | |||||  |||| ||    ||| ||||||| |||||||||||||    
T  48410907 caaaatcaattctactcgaaagcaatcaaacatctcagaatcaattccacacttatagaatcaattctgacccctctaaaagtgtaaccaaacataca 48411004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 7717367 - 7717462
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattct 97  Q
    ||||||| ||||||||| | |||| |||||||||| || ||| | ||| |||||||||||||||||    | |||| ||||||||||||||||||||    
T  7717367 agaatcagaagctacaatttctagcttcaagtagaatcaattctggaggcaaaatcaattctactctggcggaacc-aacatgtcaaaatcaattct 7717462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 33548232 - 33548188
Alignment:
Q  51 aaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaatt 95  Q
    ||||||||||||||| || |||| |||||||||||||||||||||    
T  33548232 aaaatcaattctacttaatagcatccaaacatgtcaaaatcaatt 33548188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 38332635 - 38332691
Alignment:
Q  53 aatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaa 109  Q
    |||||||| | ||||| ||| |||||||||||||||||||||| ||||| |||||||    
T  38332635 aatcaattttgctcaagagccaccaaacatgtcaaaatcaattatacacatctagaa 38332691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 43987644 - 43987692
Alignment:
Q  47 agacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaatt 95  Q
    |||||||||||||| ||||||| | || |||||||||||||||||||||    
T  43987644 agacaaaatcaattgtactcaagaacatccaaacatgtcaaaatcaatt 43987692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 52364017 - 52363957
Alignment:
Q  88 aatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    |||||||| |||||||||| ||  |||||||||  ||| ||||||||||||||||||||||    
T  52364017 aatcaattatacacctctataatcaattttggtccctctaaaagtggaaccaaacatacac 52363957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 21007732 - 21007827
Alignment:
Q  47 agacaaaatcaa-ttctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaa 141  Q
    |||||||||||| || ||||||||  |||| ||||||||||||||||||| || | || || ||  |||||||| | ||||||||||| |||||||    
T  21007732 agacaaaatcaaattttactcaaagacaactaaacatgtcaaaatcaattatatatctttaaaatcaattttggctcctccaaaagtgaaaccaaa 21007827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 35264457 - 35264604
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    |||||||||||||  || | ||||||||||||||| ||   | | ||| || ||||||||||  || | ||||||||||||||| | |||||||| |||     
T  35264457 agaatcaaaagctctaatttctagtttcaagtagaatcatatttggaggcagaatcaattctcttcgagagcaaccaaacatgtgagaatcaattttact 35264556  T
Q  101 cctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    |||||||||  |||||||   |||| | || || ||||||||||||||    
T  35264557 cctctagaataaattttgaccactctagaaatgaaaccaaacatacac 35264604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 149
Target Start/End: Complemental strand, 38022407 - 38022328
Alignment:
Q  70 agcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacacg 149  Q
    ||||| |||||||| ||||||||||||||||| |||||||  || ||||||   || | ||||| |||||||||||||||    
T  38022407 agcaatcaaacatgccaaaatcaattctacacttctagaatcaactttggtccttctagaagtgaaaccaaacatacacg 38022328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 46943162 - 46943111
Alignment:
Q  49 acaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    ||||||| |||| ||||| ||| |||||||||||||||||||||||| ||||    
T  46943162 acaaaattaattatactcgaaatcaaccaaacatgtcaaaatcaattgtaca 46943111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 829879 - 829786
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacat 144  Q
    ||||||||||| |||| || |||  ||||| |||||||||||| || ||||| | |||||  ||||||||||  ||||||||||||||| |||||    
T  829879 caaaatcaattatactaaagagcg-ccaaatatgtcaaaatcacttttacacatgtagaatgaattttggttcatccaaaagtggaacctaacat 829786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 148
Target Start/End: Original strand, 2410026 - 2410124
Alignment:
Q  51 aaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaa-ttctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    |||||||||||||||  | | || |||||||||||||||| || || ||||||| |||||| |||||||  | | ||||||||| || |||||||||||    
T  2410026 aaaatcaattctacttgagaacatccaaacatgtcaaaataaatttttacacctttagaaacaattttgactccaccaaaagtgaaatcaaacatacac 2410124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 148
Target Start/End: Complemental strand, 7262868 - 7262790
Alignment:
Q  70 agcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    ||||||||||||||||| |||||||||| |||||||| ||  ||||||||    || || |||| ||||||||||||||    
T  7262868 agcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatacac 7262790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 23290327 - 23290269
Alignment:
Q  6 caaaagctacaaatcctagtttcaag-tagagtcgattatagagacaaaatcaattcta 63  Q
    ||||||||||||||| |||||||||| |||| || | |||||||||| |||||||||||    
T  23290327 caaaagctacaaatcatagtttcaagttagaatcaactatagagacataatcaattcta 23290269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 40736583 - 40736677
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaatt 95  Q
    |||||||||||| ||||||  |||||||||||||| || |||   ||  ||||||||||| ||||| | | ||| |||||| |||||||||||||    
T  40736583 agaatcaaaagcgacaaattatagtttcaagtagaatcaatttcggatgcaaaatcaattttactcgacaacaatcaaacacgtcaaaatcaatt 40736677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 104
Target Start/End: Original strand, 44958721 - 44958755
Alignment:
Q  70 agcaaccaaacatgtcaaaatcaattctacacctc 104  Q
    ||||||||||||||||| |||||||||||||||||    
T  44958721 agcaaccaaacatgtcagaatcaattctacacctc 44958755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 7742193 - 7742250
Alignment:
Q  5 tcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattct 62  Q
    |||||||||||||||  |||||||||||| | |  |||||| ||||||||||||||||    
T  7742193 tcaaaagctacaaattttagtttcaagtaaaattaattatatagacaaaatcaattct 7742250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 12675003 - 12674934
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttgg 119  Q
    ||||||||| ||||||  ||| ||||||||||||| |  |||||||||||||||| ||||  ||||||||    
T  12675003 caaaatcaactctacttgaaaacaaccaaacatgttaggatcaattctacacctccagaatcaattttgg 12674934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 47356316 - 47356385
Alignment:
Q  26 ttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaatt 95  Q
    ||||||| || |||||| || |||||||||||||| ||||  | ||||||||||||| ||| ||||||||    
T  47356316 ttcaagtggaatcgattctaaagacaaaatcaattatacttgatagcaaccaaacatatcataatcaatt 47356385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 48089819 - 48089887
Alignment:
Q  77 aaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacata 145  Q
    ||||||||| |||||| ||||| ||||||||||  |||||||  | ||||||||||| || ||||||||    
T  48089819 aaacatgtctaaatcagttctatacctctagaataaattttgactcctccaaaagtgaaaacaaacata 48089887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 3 - 148
Target Start/End: Complemental strand, 31863 - 31718
Alignment:
Q  3 aatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacc 102  Q
    |||||||||||||||||||||| |||||||| | || ||| | ||| || |||||||| ||||| | | ||||||||||||||| |||||||||||||||    
T  31863 aatcaaaagctacaaatcctagcttcaagtataatcaattttggaggcagaatcaattttactcgacaacaaccaaacatgtcagaatcaattctacacc 31764  T
Q  103 tctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    |||||||  ||||||||| |||| | ||||||||||||||||||||    
T  31763 tctagaatcaattttggtcactctagaagtggaaccaaacatacac 31718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 37)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 5724676 - 5724823
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    ||||| ||||| |||||||||||| |||||||||| || ||| | ||| |||||||||||||||   |||||| |||||||||||| |||||||||||||    
T  5724676 agaataaaaagttacaaatcctagcttcaagtagaatcaattttggaggcaaaatcaattctacctgaaagcatccaaacatgtcagaatcaattctaca 5724775  T
Q  101 cctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    | ||||||| |||||||||   ||| | ||||||||||||||||||||    
T  5724776 cttctagaattaattttggcccctctagaagtggaaccaaacatacac 5724823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 10400741 - 10400889
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaa-ccaaacatgtcaaaatcaattctac 99  Q
    ||||||||| |||| ||||||||  ||||| |||| |  ||| ||| | ||||| ||||||||||| ||||||| |||||||| |||||||||||| |||    
T  10400741 agaatcaaaggctagaaatcctaacttcaactagaattaattctagtggcaaaaacaattctactcgaaagcaaaccaaacatatcaaaatcaattatac 10400840  T
Q  100 acctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    ||||||||||  |||||||  | |||||| |||||||||||||||||||    
T  10400841 acctctagaatcaattttgcatcctccaagagtggaaccaaacatacac 10400889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 1485192 - 1485301
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaa-aatcaattctac 99  Q
    ||||||||||||| ||| | |||| |||||||||| || ||| || || |||||| |||||||||||| ||||| |||||||||||| ||||||||||||    
T  1485192 agaatcaaaagctccaatttctagattcaagtagaatcaattctaaaggcaaaattaattctactcaagagcaaacaaacatgtcaagaatcaattctac 1485291  T
Q  100 acctctagaa 109  Q
    ||||||||||    
T  1485292 acctctagaa 1485301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 31812300 - 31812203
Alignment:
Q  49 acaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatac 146  Q
    ||||||| |||||||||| |   ||||||||||||||||||||||||||| ||||||| ||  ||||||| |||||||||||||| ||||||||||||    
T  31812300 acaaaataaattctactcgactacaaccaaacatgtcaaaatcaattctagacctctataatgaattttgcttactccaaaagtgaaaccaaacatac 31812203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 51 - 148
Target Start/End: Original strand, 33136579 - 33136675
Alignment:
Q  51 aaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    |||||||||| ||||| | |||||||||||||||||||||||||| ||||||||||||| ||||||||| |  |||||||||| ||||||| ||||||    
T  33136579 aaaatcaattatactcgagagcaaccaaacatgtcaaaatcaattatacacctctagaattaattttggct-ttccaaaagtgaaaccaaatatacac 33136675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 765432 - 765532
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    |||||||||||||||||||| ||| |||||||||| || ||| | ||| ||||| || ||||||| ||||||||||||||| |||| |||||||||||||    
T  765432 agaatcaaaagctacaaatcatagcttcaagtagaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtcagaatcaattctaca 765531  T
Q  101 c 101  Q
    |    
T  765532 c 765532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 2 - 103
Target Start/End: Complemental strand, 26280643 - 26280542
Alignment:
Q  2 gaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacac 101  Q
    ||||||||| |||||||| |||| ||||||| || || ||| | ||| |||||||||||||||  |||| ||| ||||||||||||||||||||||||||    
T  26280643 gaatcaaaaactacaaattctagcttcaagtggaatcaattcttgaggcaaaatcaattctaccaaaaaacaatcaaacatgtcaaaatcaattctacac 26280544  T
Q  102 ct 103  Q
    ||    
T  26280543 ct 26280542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 51 - 148
Target Start/End: Original strand, 29240548 - 29240645
Alignment:
Q  51 aaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    |||||||||||||||  |||  | || |||||||||||||||||| |||||||||||||  ||||||| || | ||||||||||||||||||||||||    
T  29240548 aaaatcaattctacttgaaaatatcctaacatgtcaaaatcaattttacacctctagaatcaattttgattcccccaaaagtggaaccaaacatacac 29240645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 4910947 - 4910800
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    |||||||||||||||||||| ||| |||||||||| || ||| | ||| || ||||||||||| |  |   ||||||||||||||| |||||||||||||    
T  4910947 agaatcaaaagctacaaatcatagcttcaagtagaatcaatttttgaggcagaatcaattctaattgacgacaaccaaacatgtcagaatcaattctaca 4910848  T
Q  101 cctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    | |  ||||  |||| | ||  ||| ||||||||||||||||||||||    
T  4910847 cattcagaatcaattatagtctctctaaaagtggaaccaaacatacac 4910800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 144
Target Start/End: Complemental strand, 34620853 - 34620782
Alignment:
Q  73 aaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacat 144  Q
    ||||||||||||||||||||||||||||||| |||||  |||||||| | ||||||||||||||| ||||||    
T  34620853 aaccaaacatgtcaaaatcaattctacacctttagaatcaattttgggtcctccaaaagtggaacgaaacat 34620782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 144
Target Start/End: Complemental strand, 34748290 - 34748219
Alignment:
Q  73 aaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacat 144  Q
    ||||||||||||||||||||||||||||||| |||||  |||||||| | ||||||||||||||| ||||||    
T  34748290 aaccaaacatgtcaaaatcaattctacacctttagaatcaattttgggtcctccaaaagtggaacgaaacat 34748219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 35098504 - 35098597
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaat 94  Q
    |||||||||||||| |||||| ||| | ||||||| || ||  | ||  |||||||||||||||||||||| ||||||||||||||||||||||    
T  35098504 agaatcaaaagctaaaaatcccagtattaagtagaatcaatcctggaagcaaaatcaattctactcaaaagtaaccaaacatgtcaaaatcaat 35098597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 2008403 - 2008487
Alignment:
Q  20 cctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctc 104  Q
    ||||| |||||||||| | |||||| |||||||||| |||||||||| ||| ||| ||||||||||| || ||||||||||||||    
T  2008403 cctagcttcaagtagaattgattatggagacaaaatgaattctactcgaaaacaatcaaacatgtcagaaacaattctacacctc 2008487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 6654136 - 6654232
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattct 97  Q
    ||||| |||||||||||||||||| |||||||||| |  ||| |  ||  |||||||||||||||||| |||||||||||||| || ||||||||||    
T  6654136 agaattaaaagctacaaatcctagcttcaagtagaattaattctgaaggaaaaatcaattctactcaatagcaaccaaacatgacataatcaattct 6654232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 7952755 - 7952871
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    |||||||||||||||||||||| | |||||||||| |  ||| | ||| |||||| || || |||||||| ||| ||||||||||| |||||||| ||||    
T  7952755 agaatcaaaagctacaaatcctcgcttcaagtagaataaattttggaggcaaaattaaatcaactcaaaaccaatcaaacatgtcataatcaattttaca 7952854  T
Q  101 cctctagaaataatttt 117  Q
    |||| | || |||||||    
T  7952855 cctccataattaatttt 7952871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 73 - 140
Target Start/End: Complemental strand, 33997165 - 33997098
Alignment:
Q  73 aaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaa 140  Q
    ||||||||||||||||||| |||||| | ||||||||  |||||||||| ||||||||||||||||||    
T  33997165 aaccaaacatgtcaaaatcgattctaaatctctagaatcaattttggttcctccaaaagtggaaccaa 33997098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 25195412 - 25195550
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    ||||| |||| ||||||||||  | |||||||||| || |||   ||| || |||||||| ||||| | ||||||||||||||||| |||||||| ||||    
T  25195412 agaatgaaaaactacaaatcc--gcttcaagtagaatcaattccggaggcagaatcaattatactcgatagcaaccaaacatgtcagaatcaattataca 25195509  T
Q  101 cctctagaaataattttggttactccaaaagtggaaccaaa 141  Q
    | || ||||  |||||||||| ||| | |||||||||||||    
T  25195510 catccagaatcaattttggttcctctagaagtggaaccaaa 25195550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 26550515 - 26550453
Alignment:
Q  44 tagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctcta 106  Q
    |||||||||||||||||||| |  |   |||||||||||||||||||||||||||||||||||    
T  26550515 tagagacaaaatcaattctagttgagtacaaccaaacatgtcaaaatcaattctacacctcta 26550453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 2002566 - 2002614
Alignment:
Q  56 caattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctc 104  Q
    ||||||||||| ||| |||||||||||||||||||||||||||| ||||    
T  2002566 caattctactcgaaaacaaccaaacatgtcaaaatcaattctacgcctc 2002614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 7280527 - 7280427
Alignment:
Q  3 aatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacc 102  Q
    ||||||||||||||| |  |||||| ||||| | || ||| ||| |||| |||||||||||||  ||||||||||||||||| | ||| |||| ||||||    
T  7280527 aatcaaaagctacaagttttagttttaagtaaaatcaattttagggacacaatcaattctacttgaaagcaaccaaacatgtgagaattaattttacacc 7280428  T
Q  103 t 103  Q
    |    
T  7280427 t 7280427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 24974171 - 24974107
Alignment:
Q  84 tcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    ||||||||||||||||||| ||| || ||| ||||| | |||||||||||||| |||||||||||    
T  24974171 tcaaaatcaattctacacccctacaattaactttggctcctccaaaagtggaatcaaacatacac 24974107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 31305965 - 31306004
Alignment:
Q  70 agcaaccaaacatgtcaaaatcaattctacacctctagaa 109  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  31305965 agcaaccaaacatgtcaaaatcaattctacacatctagaa 31306004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 6653809 - 6653747
Alignment:
Q  40 attatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacc 102  Q
    ||||||||| || |||||||||||||  | |||||||||||| ||||||||||||| ||||||    
T  6653809 attatagaggcagaatcaattctacttgacagcaaccaaacaagtcaaaatcaattatacacc 6653747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 145
Target Start/End: Complemental strand, 7263060 - 7262966
Alignment:
Q  51 aaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacata 145  Q
    |||||||||| ||||| | | || || || ||||||||||||||||||||| |||||||  |||||||  |  || |||||||||||||||||||    
T  7263060 aaaatcaattatactcgagaacatcctaaaatgtcaaaatcaattctacacttctagaatcaattttgcctcatctaaaagtggaaccaaacata 7262966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 16540144 - 16540082
Alignment:
Q  3 aatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctact 65  Q
    |||||||||||||||||||||| |||||||||| || ||| | |||||| |||||||| ||||    
T  16540144 aatcaaaagctacaaatcctagcttcaagtagaatcaattttggagacagaatcaattttact 16540082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 34063299 - 34063233
Alignment:
Q  73 aaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaacca 139  Q
    ||||||||||||||||||||||||||||||| |||||  ||  |||| | ||||||||| |||||||    
T  34063299 aaccaaacatgtcaaaatcaattctacacctgtagaatcaacgttggctcctccaaaagcggaacca 34063233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 142
Target Start/End: Original strand, 33141754 - 33141893
Alignment:
Q  3 aatcaaaagctacaaatcctagtttcaagt-agagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacac 101  Q
    ||||||||||| ||||| |||| ||| ||| ||| || ||| | |||  |||||||||| ||||  | ||||||||||||| |||||||||||| |||||    
T  33141754 aatcaaaagcttcaaattctaggttctagttagaatcaattctggaggtaaaatcaattatacttgagagcaaccaaacatatcaaaatcaattttacac 33141853  T
Q  102 ctctagaaataattttggttactccaaaagtggaaccaaac 142  Q
      ||||||  |||||||| | ||| ||||||| ||||||||    
T  33141854 tgctagaatcaattttggct-ctctaaaagtgaaaccaaac 33141893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 143
Target Start/End: Original strand, 579124 - 579223
Alignment:
Q  44 tagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaaca 143  Q
    ||||| |||| ||| |||||||| | ||||| ||| ||||||||||||| || |||| ||||||||  |||| | | | ||||||||||||||| |||||    
T  579124 tagaggcaaagtcagttctactcgagagcaatcaatcatgtcaaaatcagttttacatctctagaatcaattctagctgctccaaaagtggaacgaaaca 579223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 89
Target Start/End: Original strand, 2234309 - 2234348
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaa 89  Q
    ||||||||||||||||||| ||||||||||||| ||||||    
T  2234309 caaaatcaattctactcaagagcaaccaaacatatcaaaa 2234348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 148
Target Start/End: Original strand, 6896030 - 6896125
Alignment:
Q  53 aatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    |||||||| ||||| | | ||||||||||||||| ||||||||||||| ||| ||||  | |||| || |||  | ||||||||||||||| ||||    
T  6896030 aatcaattgtactcgacaacaaccaaacatgtcataatcaattctacatctccagaatcattttttgtcactttagaagtggaaccaaacaaacac 6896125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 7952519 - 7952444
Alignment:
Q  73 aaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    |||||||||||| ||||||| ||||| |||||||||   ||| |||||| ||||||||| |||| |||||| ||||    
T  7952519 aaccaaacatgtgaaaatcagttctaaacctctagagtcaatgttggttcctccaaaagaggaaacaaacacacac 7952444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 18690659 - 18690620
Alignment:
Q  53 aatcaattctactcaaaagcaaccaaacatgtcaaaatca 92  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  18690659 aatcaattctacttgaaagcaaccaaacatgtcaaaatca 18690620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 106
Target Start/End: Complemental strand, 578965 - 578864
Alignment:
Q  5 tcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctc 104  Q
    |||||| ||| |||| |||| |||||||||  || ||| || |  |||||| | ||||||| |||| |||| ||||||||||||||||||| ||| ||||    
T  578965 tcaaaaactaaaaattctagcttcaagtagtatcaattctacaagcaaaattatttctacttaaaaacaactaaacatgtcaaaatcaattttactcctc 578866  T
Q  105 ta 106  Q
    ||    
T  578865 ta 578864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 19601799 - 19601714
Alignment:
Q  59 ttctactcaaaagcaaccaaacatgtcaaaat-caattctacacctctagaaataattttggttactccaaaagtggaaccaaaca 143  Q
    |||||||| | || |||||||||| ||||||  |||||||||| |||| |||  |||||||  | |||||||||||||||||||||    
T  19601799 ttctactctagaggaaccaaacatctcaaaaaacaattctacatctctggaatcaattttgactcctccaaaagtggaaccaaaca 19601714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 30926881 - 30926942
Alignment:
Q  57 aattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttg 118  Q
    |||||||||| | ||| |||||||||||||||| ||||| ||||| |||||||  |||||||    
T  30926881 aattctactcgagagcgaccaaacatgtcaaaagcaattatacacttctagaatcaattttg 30926942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 957701 - 957745
Alignment:
Q  51 aaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaatt 95  Q
    |||||||||||||||| ||||||| ||||||||||  ||||||||    
T  957701 aaaatcaattctactcgaaagcaatcaaacatgtcgtaatcaatt 957745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 1499853 - 1499805
Alignment:
Q  53 aatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacac 101  Q
    |||||||||||||| | ||||| |||||||| || ||||||||||||||    
T  1499853 aatcaattctactctacagcaatcaaacatgccataatcaattctacac 1499805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 6021843 - 6021695
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatca---attct 97  Q
    |||||||||||||||| ||||||| |||||||||| |||||| ||||| ||||||||||||||||  ||| ||| ||||| |||||||||||   |||||    
T  6021843 agaatcaaaagctacatatcctagcttcaagtagaatcgattctagaggcaaaatcaattctacttgaaatcaatcaaacttgtcaaaatcaattattct 6021744  T
Q  98 acacctctagaaataattttggttactccaaaagtggaaccaaacataca 147  Q
    |||||||||| ||| | |||   | |||||||||||||||||||||||||    
T  6021743 acacctctag-aatcaatttaactcctccaaaagtggaaccaaacataca 6021695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 28083934 - 28084034
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    ||||||||||||||||||| |||| |||||||||| || ||||   |||||||||||||||||||| ||| |||||||| |||||| |||||||||||||    
T  28083934 agaatcaaaagctacaaattctagcttcaagtagaatcaattacgaagacaaaatcaattctactcgaaaacaaccaaatatgtcagaatcaattctaca 28084033  T
Q  101 c 101  Q
    |    
T  28084034 c 28084034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 70 - 148
Target Start/End: Original strand, 15478116 - 15478194
Alignment:
Q  70 agcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    ||||||||||||||||||||||||||||||||| ||| ||  || ||||| | ||||||||||||||||||||||||||    
T  15478116 agcaaccaaacatgtcaaaatcaattctacaccgctaaaatcaagtttggctcctccaaaagtggaaccaaacatacac 15478194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 32 - 148
Target Start/End: Original strand, 49079291 - 49079407
Alignment:
Q  32 tagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaag 131  Q
    |||| |||||| | ||||| ||||||||||||||| | |  ||||||||||||||||||||| ||||||||||| |||   ||||||   ||||||||||    
T  49079291 tagaatcgatttttgagacgaaatcaattctactctagaagaaccaaacatgtcaaaatcaactctacacctctggaatcgattttgagcactccaaaag 49079390  T
Q  132 tggaaccaaacatacac 148  Q
    ||||| |||||||||||    
T  49079391 tggaatcaaacatacac 49079407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 24587899 - 24587840
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaa 109  Q
    |||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  24587899 caaagtcaattctactcaagagcaaccaaacatgtcacaatcaattctacacctctagaa 24587840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 145
Target Start/End: Complemental strand, 31117465 - 31117370
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacata 145  Q
    ||||| ||||||||||||||| ||||||||| | |||||||||||| ||||||||||||   |||||||| |||| ||||  ||||||||||||||    
T  31117465 caaaaccaattctactcaaaaccaaccaaacctatcaaaatcaattttacacctctagagtcaattttgggtacttcaaacatggaaccaaacata 31117370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 145
Target Start/End: Original strand, 32088669 - 32088763
Alignment:
Q  51 aaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacata 145  Q
    |||||||||||||||  | |||||||||||||||||||||||||| ||||| || |||| ||| ||||  | ||||||| |||||| ||||||||    
T  32088669 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattttacacgtccagaattaactttgactgctccaaacgtggaatcaaacata 32088763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 41516977 - 41516883
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacat 144  Q
    ||||||||||||||||| ||| ||  | || |||||| ||||||||||||||||||||||   ||||||  | ||||||||||||||||||||||    
T  41516977 caaaatcaattctactcgaaaacattccaagatgtcataatcaattctacacctctagaatggattttgactcctccaaaagtggaaccaaacat 41516883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 5 - 145
Target Start/End: Complemental strand, 12655280 - 12655139
Alignment:
Q  5 tcaaaagctacaaatcctagtttcaagt-agagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacct 103  Q
    ||||| ||||||||| |||| ||||||| ||| |  ||| ||||| |||| || | ||||||| |||||||| ||||||||||||||||| | |||||||    
T  12655280 tcaaatgctacaaattctagcttcaagttagaattaattctagaggcaaagtcgaatctactccaaagcaactaaacatgtcaaaatcaactttacacct 12655181  T
Q  104 ctagaaataattttggttactccaaaagtggaaccaaacata 145  Q
    | | ||  |||| |||||||| |||| ||||||||| |||||    
T  12655180 ccacaatcaattatggttactgcaaatgtggaaccagacata 12655139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 47321966 - 47322055
Alignment:
Q  15 caaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctc 104  Q
    ||||| |||| |||||||| | || ||||||||  || |||||||||||||| | | |||| ||||||||||||||||||||||||||||    
T  47321966 caaattctagcttcaagtataatcaattatagaagcagaatcaattctactcgacaacaacaaaacatgtcaaaatcaattctacacctc 47322055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 37131937 - 37131865
Alignment:
Q  37 tcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaa 109  Q
    ||||||| | || ||||||||| ||||||| | |||||||||||||| |||||||||||||| ||||||||||    
T  37131937 tcgattacataggcaaaatcaaatctactcgagagcaaccaaacatgccaaaatcaattctatacctctagaa 37131865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 49824879 - 49824824
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctct 105  Q
    ||||||||||| ||||| ||||||| |||| |||||||||||||||||||||||||    
T  49824879 caaaatcaattgtactcgaaagcaaacaaagatgtcaaaatcaattctacacctct 49824824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 86 - 148
Target Start/End: Original strand, 20721046 - 20721108
Alignment:
Q  86 aaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    ||||| ||||||||||||||||||  ||||||| || ||||||||||||||| ||||||||||    
T  20721046 aaaatgaattctacacctctagaatcaattttgattcctccaaaagtggaacaaaacatacac 20721108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 51 - 101
Target Start/End: Original strand, 47892484 - 47892534
Alignment:
Q  51 aaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacac 101  Q
    ||||||||||||||||||||||||||||||||| |  ||||||||||||||    
T  47892484 aaaatcaattctactcaaaagcaaccaaacatgacggaatcaattctacac 47892534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 93
Target Start/End: Complemental strand, 646170 - 646127
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaa 93  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||    
T  646170 caaaatcaattctactcaaaaacaaccaaacatgtcataatcaa 646127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 3016201 - 3016119
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgt 84  Q
    ||||||||||||||||||| |||  |||||||||| || |||||| || |||||||||||||| | |||| |||||||| ||||    
T  3016201 agaatcaaaagctacaaattctaagttcaagtagaatcaattataaag-caaaatcaattctattaaaaaacaaccaaatatgt 3016119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 9939823 - 9939882
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaa 109  Q
    ||||||||||| ||||| | || |||||||||||||||||| |||| |||||||||||||    
T  9939823 caaaatcaattatactctagaggaaccaaacatgtcaaaattaattttacacctctagaa 9939882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 145
Target Start/End: Original strand, 18325187 - 18325281
Alignment:
Q  51 aaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacata 145  Q
    |||||||||||||||| | |  | ||||||||||||||||||||||| ||| ||| |||  | |||||  | |||||||||||||| ||||||||    
T  18325187 aaaatcaattctactcgagaaaatccaaacatgtcaaaatcaattcttcacatctggaatcacttttgtctcctccaaaagtggaaacaaacata 18325281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 37522976 - 37523050
Alignment:
Q  21 ctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaatt 95  Q
    |||| |||||||||| || |||  ||||| |||||||||||||||| | ||||| ||||||||||| ||||||||    
T  37522976 ctagcttcaagtagaatcaattcgagagaaaaaatcaattctactccagagcaatcaaacatgtcataatcaatt 37523050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 148
Target Start/End: Complemental strand, 3819663 - 3819566
Alignment:
Q  51 aaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    |||||||||||||||  ||||| | ||||||||  |||||||||| |  ||||||||||  ||||||| || ||| | |||||||||||||| |||||    
T  3819663 aaaatcaattctactagaaagcgatcaaacatgcaaaaatcaattttggacctctagaatcaattttgtttgctctacaagtggaaccaaacttacac 3819566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 142
Target Start/End: Complemental strand, 8381951 - 8381882
Alignment:
Q  73 aaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaac 142  Q
    ||||||||||||||||||||||| || ||||||||||  |||||||  | ||||| |||| |||||||||    
T  8381951 aaccaaacatgtcaaaatcaattttatacctctagaatcaattttgactcctccagaagtcgaaccaaac 8381882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 11049289 - 11049248
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgatt 42  Q
    |||||||||||||||||||||||| |||||||||| ||||||    
T  11049289 agaatcaaaagctacaaatcctagcttcaagtagaatcgatt 11049248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 8130911 - 8130851
Alignment:
Q  87 aaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacataca 147  Q
    ||||||||||||||| | |||||  |||||||| | ||||| |||||||||||||||||||    
T  8130911 aaatcaattctacacttttagaatcaattttggctcctccagaagtggaaccaaacataca 8130851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 45660862 - 45660941
Alignment:
Q  68 aaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    ||||||||||||||||||| |||||||||| |||||| | ||  ||||||||   ||||| ||||||||| ||||||||||    
T  45660862 aaagcaaccaaacatgtcagaatcaattcttcacctcca-aatcaattttggcccctccagaagtggaacgaaacatacac 45660941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 6041662 - 6041623
Alignment:
Q  70 agcaaccaaacatgtcaaaatcaattctacacctctagaa 109  Q
    ||||||||||||| |||||||||||| |||||||||||||    
T  6041662 agcaaccaaacatatcaaaatcaattttacacctctagaa 6041623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 31362251 - 31362355
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    ||||||||||||||||||| |||  ||||    || || ||||| ||| |||||||||||||||   ||||||||||||||||| | | || ||||||||    
T  31362251 agaatcaaaagctacaaattctaacttca----gaatcaattatggaggcaaaatcaattctacatgaaagcaaccaaacatgttagagtcgattctaca 31362346  T
Q  101 cctctagaa 109  Q
    | |||||||    
T  31362347 catctagaa 31362355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 145
Target Start/End: Complemental strand, 6744606 - 6744536
Alignment:
Q  75 ccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacata 145  Q
    ||||| ||||||||||||||| ||| |||| | ||  || |||| || |||||||||||||||||||||||    
T  6744606 ccaaatatgtcaaaatcaattttacccctcaataatcaaatttgtttcctccaaaagtggaaccaaacata 6744536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 103
Target Start/End: Complemental strand, 20720783 - 20720753
Alignment:
Q  73 aaccaaacatgtcaaaatcaattctacacct 103  Q
    |||||||||||||||||||||||||||||||    
T  20720783 aaccaaacatgtcaaaatcaattctacacct 20720753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 34387739 - 34387841
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    ||||||||||||| ||| ||| |  |||||||| | || |||||  |||||| |||| |||||||||| | |||| ||| |||||| |||||||| ||||    
T  34387739 agaatcaaaagctgcaattcccaacttcaagtaaaatcaattatgaagacaagatcatttctactcaacaacaacaaaaaatgtcagaatcaattataca 34387838  T
Q  101 cct 103  Q
    |||    
T  34387839 cct 34387841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 36780164 - 36780266
Alignment:
Q  3 aatcaaaagctacaaa-tcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacac 101  Q
    |||||||||||||||| |||||  |||||||||| |  ||| |  ||| ||||| ||| | |||| | | ||||||||||| ||||||||||||||||||    
T  36780164 aatcaaaagctacaaaatcctaacttcaagtagaattcattttgaagataaaattaatacaactcgacaacaaccaaacatatcaaaatcaattctacac 36780263  T
Q  102 ctc 104  Q
    |||    
T  36780264 ctc 36780266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 51500880 - 51500914
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtaga 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  51500880 agaatcaaaagctacaaatcctaggttcaagtaga 51500914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 1514376 - 1514288
Alignment:
Q  7 aaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattc 96  Q
    |||||||||||||||||| |||||||||| |  ||| | |||||| ||||| || ||||  | ||||||||||||||||| ||| |||||    
T  1514376 aaaagctacaaatcctagcttcaagtagaataaattttggagacagaatcagttttact-gacagcaaccaaacatgtcagaattaattc 1514288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 14515375 - 14515432
Alignment:
Q  47 agacaaaatcaattctactcaaaagcaaccaaacatgtc-aaaatcaattctacacct 103  Q
    |||||||||||||||||||| | ||||| ||||||| || |||||||||| |||||||    
T  14515375 agacaaaatcaattctactcgagagcaatcaaacatatcaaaaatcaattttacacct 14515432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 2099784 - 2099840
Alignment:
Q  53 aatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaa 109  Q
    |||||||||||||| | | ||| |||||| |||| ||||||||||||||||| ||||    
T  2099784 aatcaattctactcgacatcaatcaaacaagtcataatcaattctacacctccagaa 2099840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 14105035 - 14105099
Alignment:
Q  84 tcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    |||||||| ||||||||| | |||||  |||||||  | ||||||||||||||| ||||||||||    
T  14105035 tcaaaatctattctacacatgtagaatcaattttgaattctccaaaagtggaactaaacatacac 14105099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 105
Target Start/End: Original strand, 23052399 - 23052431
Alignment:
Q  73 aaccaaacatgtcaaaatcaattctacacctct 105  Q
    |||||||| ||||||||||||||||||||||||    
T  23052399 aaccaaacttgtcaaaatcaattctacacctct 23052431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 30557483 - 30557447
Alignment:
Q  73 aaccaaacatgtcaaaatcaattctacacctctagaa 109  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  30557483 aaccaaacatgtcagaatcaattctacacctccagaa 30557447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 52013602 - 52013670
Alignment:
Q  80 catgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    |||||||||||||||   |  ||||||||| ||||||||| | ||||||||||| |||||||| |||||    
T  52013602 catgtcaaaatcaatcacatgcctctagaattaattttggctcctccaaaagtgaaaccaaacgtacac 52013670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 32927929 - 32927833
Alignment:
Q  3 aatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctac 99  Q
    |||||||||||||||||||||| |||||||||| || | ||| ||| ||||||||||||||||  ||||||||||||||||||| | ||||||||||    
T  32927929 aatcaaaagctacaaatcctagcttcaagtagaatcaactattgaggcaaaatcaattctactggaaagcaaccaaacatgtcagagtcaattctac 32927833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 26 - 148
Target Start/End: Complemental strand, 35495274 - 35495152
Alignment:
Q  26 ttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactc 125  Q
    |||||||||| || ||| ||||| |||||| ||||||| |  | || ||| ||||||||||||||||||||||||| | |||||  |||||||| | |||    
T  35495274 ttcaagtagaatcaattctagaggcaaaattaattctaatttagagaaacaaaacatgtcaaaatcaattctacacttgtagaatcaattttgggtgctc 35495175  T
Q  126 caaaagtggaaccaaacatacac 148  Q
    |||||||||||||||||||||||    
T  35495174 caaaagtggaaccaaacatacac 35495152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 42455925 - 42455853
Alignment:
Q  27 tcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctac 99  Q
    ||||||||| || ||||| ||| || ||||||| |||||||||||||||||||||||||||||||||||||||    
T  42455925 tcaagtagaatcaattatggaggcagaatcaatcctactcaaaagcaaccaaacatgtcaaaatcaattctac 42455853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 37684444 - 37684341
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    |||||||||||| ||||||||||  |||||||||| || ||| | ||||||||||||||||||||| | | ||||||||||| ||  |||||||| ||||    
T  37684444 agaatcaaaagccacaaatcctaacttcaagtagaatcaattctggagacaaaatcaattctactccacaacaaccaaacatttcggaatcaattttaca 37684345  T
Q  101 cctc 104  Q
    ||||    
T  37684344 cctc 37684341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 46 - 145
Target Start/End: Complemental strand, 7533791 - 7533696
Alignment:
Q  46 gagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacata 145  Q
    ||||||||||||||||||||  |||||||||||||||||||  ||    |||||||||| |||| |||||||||   |||||||||||||||||||||||    
T  7533791 gagacaaaatcaattctacttgaaagcaaccaaacatgtcaggat----tctacacctccagaattaattttggcccctccaaaagtggaaccaaacata 7533696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 41614834 - 41614736
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    ||||||||||||||||  ||| || ||||||| ||||||||||||| || ||||||||||  |||||||| | || || || |||||||||||||||||    
T  41614834 caaaatcaattctacttgaaaccatccaaacaagtcaaaatcaattttatacctctagaatcaattttggctcctacacaaatggaaccaaacatacac 41614736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 8252786 - 8252728
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaa 109  Q
    |||||||||||||||| |||| || |||||||||||||||||| ||||||||||||||||    
T  8252786 caaaatcaattctacttaaaa-cagccaaacatgtcaaaatcagttctacacctctagaa 8252728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 46 - 148
Target Start/End: Complemental strand, 4554328 - 4554226
Alignment:
Q  46 gagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacata 145  Q
    ||||||||||||||| ||||  | |||||| |||  |||||||||||||| |||||||||||||  ||||| || |  ||||||| | ||||||||||||    
T  4554328 gagacaaaatcaattatactagagagcaactaaatgtgtcaaaatcaattttacacctctagaatcaatttaggctcatccaaaatttgaaccaaacata 4554229  T
Q  146 cac 148  Q
    |||    
T  4554228 cac 4554226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 5997372 - 5997434
Alignment:
Q  44 tagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctcta 106  Q
    ||||| ||||||||||| ||||||||| || |||||||||||||||||||| |||| ||||||    
T  5997372 tagaggcaaaatcaattttactcaaaaacatccaaacatgtcaaaatcaatcctacgcctcta 5997434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 145
Target Start/End: Original strand, 39648242 - 39648335
Alignment:
Q  52 aaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacata 145  Q
    ||||||||| ||||  | || ||||||||||||||||||||||| |||| ||||||||  |||||||  | ||| ||||||| |||||||||||    
T  39648242 aaatcaattttactatagagaaaccaaacatgtcaaaatcaattatacatctctagaatcaattttgactcctctaaaagtgtaaccaaacata 39648335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 44141096 - 44141247
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatg-------tcaaaatcaa 93  Q
    |||||||||| ||||||||||||  |||||||||| || ||| | ||| ||||||||||||||||  | | ||| || |||||       ||| ||||||    
T  44141096 agaatcaaaaactacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatcagacatgttagaactcagaatcaa 44141195  T
Q  94 ttctacacctctagaaataattttggttactccaaaagtggaaccaaacata 145  Q
    ||||| ||||| ||||  |||||||||| ||| | |||||||||||||||||    
T  44141196 ttctagacctccagaatcaattttggttcctctagaagtggaaccaaacata 44141247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 8700870 - 8700754
Alignment:
Q  26 ttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactc 125  Q
    |||||||||| || ||| |||||||||  ||||||| |||| | || |||||||||||||||| |||||||||||| | || || ||||||||| |||      
T  8700870 ttcaagtagaatcaattctagagacaa--tcaattcaactctagagaaaccaaacatgtcaaa-tcaattctacacatttaaaattaattttggctacat 8700774  T
Q  126 caaaagtggaaccaaacata 145  Q
    ||| |||| |||||||||||    
T  8700773 caatagtgaaaccaaacata 8700754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 26100192 - 26100276
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagaga-caaaatcaattctactcaaaagcaaccaaacatgt 84  Q
    |||||||||||||||||||||||| ||||| ||||  | ||| |||||| |||| |||||||||||   ||||||||||||||||    
T  26100192 agaatcaaaagctacaaatcctagcttcaaatagaaccaattctagagaccaaagtcaattctacttggaagcaaccaaacatgt 26100276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 7644596 - 7644502
Alignment:
Q  8 aaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacct 103  Q
    ||||||||||||||||| || ||||||| || ||| || |  || |||||||||||| | |||||||||||| |||||| |||||||| |||||||    
T  7644596 aaagctacaaatcctagctttaagtagaatcaattctaaatccataatcaattctacacgaaagcaaccaaa-atgtcagaatcaattgtacacct 7644502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 11791783 - 11791874
Alignment:
Q  5 tcaaaagctacaaatcctagtttcaag-tagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaatt 95  Q
    |||||||||||||||||||| || ||| |||| ||  |||| ||| |||| |||||| || ||||| ||||||||||||| |||||||||||    
T  11791783 tcaaaagctacaaatcctagcttgaaggtagaatcagttatggaggcaaattcaattatattcaaaggcaaccaaacatgccaaaatcaatt 11791874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 13384700 - 13384803
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    |||||||||||||||||||  ||| ||||| |||| || ||| | |||| | ||  ||||| |||| | | ||||||||||||||| |||||||||||||    
T  13384700 agaatcaaaagctacaaattttagcttcaaatagaatcaattttggagaaagaacaaattcgactcgacaacaaccaaacatgtcagaatcaattctaca 13384799  T
Q  101 cctc 104  Q
    ||||    
T  13384800 cctc 13384803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 146
Target Start/End: Complemental strand, 32056353 - 32056259
Alignment:
Q  51 aaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatac 146  Q
    |||||||||| ||||  | ||||||||||| ||||||| ||  |||||||| |||||||  |||||||||| || |||||||| ||||||||||||    
T  32056353 aaaatcaattttactatagagcaaccaaacttgtcaaa-tctgttctacacatctagaatcaattttggttccttcaaaagtgaaaccaaacatac 32056259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 12742276 - 12742227
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctac 99  Q
    ||||||||||||||||| |||||||||||||||  || ||||||||||||    
T  12742276 caaaatcaattctactcgaaagcaaccaaacataccataatcaattctac 12742227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 145
Target Start/End: Original strand, 24776178 - 24776283
Alignment:
Q  40 attatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaacca 139  Q
    |||||||||  |||||||||| | | | | || |||||||||| ||||||||||||||||||| | ||||  ||||| |  |  ||||||||||||||||    
T  24776178 attatagaggaaaaatcaattttgcactagagaaaccaaacatatcaaaatcaattctacaccccgagaatcaatttcgcctcttccaaaagtggaacca 24776277  T
Q  140 aacata 145  Q
    ||||||    
T  24776278 aacata 24776283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 26668591 - 26668478
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    ||||| |||| ||||||||  |||||| ||||||| || ||||| ||| || |||||||||||||| | |  || ||||||||| | |||||||||||||    
T  26668591 agaataaaaaactacaaattgtagttttaagtagaatcaattatggaggcagaatcaattctactcgacaagaatcaaacatgttagaatcaattctaca 26668492  T
Q  101 cctctagaaataat 114  Q
     ||| |||| ||||    
T  26668491 tctccagaattaat 26668478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 30251702 - 30251630
Alignment:
Q  76 caaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    ||||||| ||||||| |||| ||||| |||| ||  |||||||| | ||||||| ||||||||||||||||||    
T  30251702 caaacatatcaaaataaattttacacatctaaaatcaattttggctcctccaaatgtggaaccaaacatacac 30251630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 32994322 - 32994370
Alignment:
Q  53 aatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacac 101  Q
    |||||||||||| | ||||||||||||||| ||| ||||||||||||||    
T  32994322 aatcaattctacacgaaagcaaccaaacatatcataatcaattctacac 32994370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 34732038 - 34732098
Alignment:
Q  86 aaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatac 146  Q
    |||||||||||||||| |||||||  |||||||||  ||| ||||||||| ||||||||||    
T  34732038 aaaatcaattctacacatctagaatcaattttggtatctctaaaagtggagccaaacatac 34732098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 36448078 - 36448006
Alignment:
Q  76 caaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    ||||||||||||||| |||||||||| | |||||  ||||| |  | ||| ||||||||||||||||||||||    
T  36448078 caaacatgtcaaaatgaattctacacatttagaatcaatttagacttctcaaaaagtggaaccaaacatacac 36448006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 147
Target Start/End: Complemental strand, 4554486 - 4554399
Alignment:
Q  60 tctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacataca 147  Q
    ||||||| | || |||||||  ||||||||| |||||||||| |||||||  ||||| || | |||||||||||  ||||||||||||    
T  4554486 tctactctagaggaaccaaatctgtcaaaatgaattctacacttctagaatcaatttgggctcctccaaaagtgataccaaacataca 4554399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 18355928 - 18355975
Alignment:
Q  53 aatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    |||||||||||||| ||| ||| || ||||||||||||||||||||||    
T  18355928 aatcaattctactcgaaaacaatcatacatgtcaaaatcaattctaca 18355975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 81 - 148
Target Start/End: Original strand, 28445024 - 28445091
Alignment:
Q  81 atgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    ||||||||||||||||||  ||||||||| | ||||||  | ||| |||||||||||||| |||||||    
T  28445024 atgtcaaaatcaattctatgcctctagaattcattttgcctcctcaaaaagtggaaccaagcatacac 28445091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 148
Target Start/End: Original strand, 38875358 - 38875456
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttact-ccaaaagtggaaccaaacatacac 148  Q
    |||||||||||||| |||| |  |  |||||||||||||||||||||||||| |||| ||  |||| || || || |||||||| |||||||||||||||    
T  38875358 caaaatcaattctattcaagaaaattcaaacatgtcaaaatcaattctacacttcta-aatcaattatgttttctcccaaaagtagaaccaaacatacac 38875456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 4336389 - 4336343
Alignment:
Q  52 aaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattcta 98  Q
    ||||||||| ||||| | | |||||||||||||||||||||||||||    
T  4336389 aaatcaattatactcgagaccaaccaaacatgtcaaaatcaattcta 4336343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 143
Target Start/End: Original strand, 5218993 - 5219055
Alignment:
Q  81 atgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaaca 143  Q
    |||||| ||||||||||||| || ||||| ||||||||||  ||| |||||| ||||||||||    
T  5218993 atgtcagaatcaattctacatctttagaattaattttggtctctctaaaagttgaaccaaaca 5219055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 7720170 - 7720117
Alignment:
Q  47 agacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    |||||||||||||| ||||| |||| ||||||| ||| |||||||| |||||||    
T  7720170 agacaaaatcaattatactcgaaagtaaccaaatatgacaaaatcagttctaca 7720117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 32767352 - 32767275
Alignment:
Q  71 gcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    ||||| |||||||||||||||||||||| | ||||||||  |||||||| |   ||||| |||  |||||||||||||    
T  32767352 gcaacgaaacatgtcaaaatcaattctatatctctagaatcaattttggctctcccaaacgtgacaccaaacatacac 32767275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 38868537 - 38868436
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaacc-aaacatgtcaaaatcaattctac 99  Q
    |||| ||||||||||||||| ||| |||||||||| || ||| ||||| ||  ||||||| ||||| | | ||||| ||| || ||| ||||||||||||    
T  38868537 agaaccaaaagctacaaatcttagcttcaagtagaatcaattttagaggcatcatcaattttactcgacaacaaccaaaatatatcagaatcaattctac 38868438  T
Q  100 ac 101  Q
    ||    
T  38868437 ac 38868436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 36200178 - 36200278
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    |||||||||| | ||||||| ||  ||||||| || || ||| | |||||| || ||||||||||    ||||| ||||||||||| |||||||||||||    
T  36200178 agaatcaaaatcgacaaatcataacttcaagttgaatcaattctggagacataaacaattctacttgccagcaagcaaacatgtcataatcaattctaca 36200277  T
Q  101 c 101  Q
    |    
T  36200278 c 36200278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 34250397 - 34250540
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    ||||||||||||||||| | ||||  ||||||||| || ||| ||||| || |||||||||||||| | || ||||||||||||||||| ||||||||||    
T  34250397 agaatcaaaagctacaatttctagcatcaagtagaatcaattctagaggcataatcaattctactctagagaaaccaaacatgtcaaaaacaattctaca 34250496  T
Q  101 cctctagaaataattttggttactccaaaagtggaaccaaacat 144  Q
    | |||||||  |||| |   | || |||||||||||||||||||    
T  34250497 catctagaatcaattataactccttcaaaagtggaaccaaacat 34250540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 53 - 147
Target Start/End: Original strand, 3043102 - 3043196
Alignment:
Q  53 aatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacataca 147  Q
    ||||||||||| ||  ||||||| |||||||||||||||||||||||||||||||||  ||||||| || ||||| ||||||||||| |||||||    
T  3043102 aatcaattctattcttaagcaactaaacatgtcaaaatcaattctacacctctagaatcaattttgattcctccataagtggaaccagacataca 3043196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 15368232 - 15368136
Alignment:
Q  51 aaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacataca 147  Q
    |||| ||||| |||||  ||| ||||| ||||||||||||||||||||||  |||||||  |||||||| | |||||||||||||||||||||||||    
T  15368232 aaaaacaattatactctgaaggaaccatacatgtcaaaatcaattctacatatctagaatcaattttggctcctccaaaagtggaaccaaacataca 15368136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 6951351 - 6951453
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    |||||||||||||||||||||||  |||||||||| || ||||||||||| || |  ||||||||| |||| ||| ||| |||||| |||||||||||||    
T  6951351 agaatcaaaagctacaaatcctaacttcaagtagaatcaattatagagacgaact-gattctactcgaaagtaactaaatatgtcagaatcaattctaca 6951449  T
Q  101 cctc 104  Q
    ||||    
T  6951450 cctc 6951453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 46 - 148
Target Start/End: Complemental strand, 29922888 - 29922786
Alignment:
Q  46 gagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacata 145  Q
    ||||||||||||||||| ||| | | ||||||||||||||||||||||||||||||  ||||||  |||||||  | ||| ||||||||||  |||||||    
T  29922888 gagacaaaatcaattctgctcgagaacaaccaaacatgtcaaaatcaattctacactactagaatcaattttgactcctcaaaaagtggaagtaaacata 29922789  T
Q  146 cac 148  Q
    |||    
T  29922788 cac 29922786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 10898718 - 10898629
Alignment:
Q  44 tagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtg 133  Q
    ||||| ||||||||||| ||||| | ||||||||||||||||||||| ||||| ||| ||||||||  ||||||| || |||||||||||    
T  10898718 tagaggcaaaatcaattttactcgagagcaaccaaacatgtcaaaattaattcgacagctctagaatcaattttgattcctccaaaagtg 10898629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 145
Target Start/End: Complemental strand, 39097251 - 39097159
Alignment:
Q  53 aatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacata 145  Q
    ||||||||||||   ||| ||||||||||||||||||||||||||||||||||| ||  ||||| |||  ||| ||||||| |||||||||||    
T  39097251 aatcaattctacctgaaaccaaccaaacatgtcaaaatcaattctacacctctataatcaatttcggtctctctaaaagtgaaaccaaacata 39097159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 152
Target Start/End: Complemental strand, 37121575 - 37121473
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacacg 149  Q
    ||||||||||| || |||| |||||| ||||||| |||||  ||| ||||||||||||||  |||||||| | ||| | || ||||||||||||||||||    
T  37121575 caaaatcaattatagtcaagagcaactaaacatgacaaaaataatgctacacctctagaatcaattttggctcctctacaaatggaaccaaacatacacg 37121476  T
Q  150 aag 152  Q
    |||    
T  37121475 aag 37121473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 147
Target Start/End: Original strand, 18851130 - 18851274
Alignment:
Q  3 aatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacc 102  Q
    |||||||||||||||||| ||| |||||||||| || ||||||| || |  |||||||||| |  | |||||||||||| |||| | ||||||||||| |    
T  18851130 aatcaaaagctacaaatcatagcttcaagtagaatcaattatagggataggatcaattctaattgatagcaaccaaacacgtcagagtcaattctacaac 18851229  T
Q  103 tctagaaataattttggttactccaaaagtggaaccaaacataca 147  Q
    || | ||  |||||||||  ||| | ||| |||| ||||||||||    
T  18851230 tccataatcaattttggtccctctagaagcggaatcaaacataca 18851274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 14299369 - 14299262
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    ||||| |||| ||||||||||||  |||||||||| || ||| || |  ||||||||||| || || ||| |||||||| ||| || |||||||||||||    
T  14299369 agaataaaaaactacaaatcctaacttcaagtagaatcaattttaaaagcaaaatcaattttattcgaaaacaaccaaatatgccagaatcaattctaca 14299270  T
Q  101 cctctaga 108  Q
    ||||||||    
T  14299269 cctctaga 14299262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 148
Target Start/End: Original strand, 22226284 - 22226429
Alignment:
Q  3 aatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacc 102  Q
    ||||||||||||||||| |||  |||||||||| || || |   | |||||||||||| || || | | ||||||||||||||| ||||||||||||||     
T  22226284 aatcaaaagctacaaatactatcttcaagtagaatcaatcaacaaaacaaaatcaattttagtcgacaacaaccaaacatgtcagaatcaattctacacg 22226383  T
Q  103 tctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    || | ||  |||| | |||  || |||||||||| |||||||||||    
T  22226384 tccaaaatcaattatagttcgtctaaaagtggaatcaaacatacac 22226429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 42439667 - 42439768
Alignment:
Q  5 tcaaaagctacaaatcctagtttcaagt-agagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacct 103  Q
    |||||||||||| || |||| ||||||| ||| || ||| | |||  ||||||||||||| ||| |||||||||||  |||||||||||||| |||||||    
T  42439667 tcaaaagctacagattctagcttcaagttagaatcaattctggaggaaaaatcaattctagtcacaagcaaccaaatgtgtcaaaatcaattttacacct 42439766  T
Q  104 ct 105  Q
    ||    
T  42439767 ct 42439768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 10860405 - 10860497
Alignment:
Q  6 caaaagctacaaatcctagtttcaagt-agagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattct 97  Q
    |||||||||||||| |||| ||||||| ||| ||  || |||| |||||||||||| || |||| |  |||||||||||||||||||||||||    
T  10860405 caaaagctacaaattctagcttcaagtcagaatcacttctagacacaaaatcaattatattcaataaaaaccaaacatgtcaaaatcaattct 10860497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 147
Target Start/End: Original strand, 10859942 - 10860013
Alignment:
Q  76 caaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacataca 147  Q
    |||||| |||||||||| ||||||||||||| ||  |||||||  |  ||||||||||||||||||||||||    
T  10859942 caaacaggtcaaaatcatttctacacctctataatgaattttgcctcttccaaaagtggaaccaaacataca 10860013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 11648119 - 11648020
Alignment:
Q  3 aatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacc 102  Q
    ||||||||  |||||||| ||| |||||||||| || ||| || |  || ||| |||||||||| | ||||| |||||||||||||||||||| ||||||    
T  11648119 aatcaaaatgtacaaatcttagcttcaagtagaatcaattttaaatgcataataaattctactcgacagcaatcaaacatgtcaaaatcaattatacacc 11648020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 145
Target Start/End: Complemental strand, 28973828 - 28973753
Alignment:
Q  70 agcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacata 145  Q
    |||| |||||||| |||||||||||||||||| |||||||  ||||| || | |||||||| | ||||||||||||    
T  28973828 agcatccaaacatatcaaaatcaattctacacatctagaatcaatttaggctcctccaaaactagaaccaaacata 28973753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 146
Target Start/End: Complemental strand, 10161822 - 10161720
Alignment:
Q  44 tagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaaca 143  Q
    ||||| |||| ||||||||| || | | ||| |||||||||||| ||||||||||||| |||||||  ||||||  || | |  ||||||||||||||||    
T  10161822 tagaggcaaagtcaattctattcgagaacaatcaaacatgtcaagatcaattctacacatctagaatcaattttacttccccagaaagtggaaccaaaca 10161723  T
Q  144 tac 146  Q
    |||    
T  10161722 tac 10161720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 142
Target Start/End: Original strand, 13224704 - 13224805
Alignment:
Q  40 attatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaacca 139  Q
    |||||||| |||||||||||| |||||  || || ||||||||||||||||||||| |||| ||||||||  ||||||   |||| |||||||| ||| |    
T  13224704 attatagaaacaaaatcaattatactcggaa-catccaaacatgtcaaaatcaattatacatctctagaatcaattttacctacttcaaaagtgaaacta 13224802  T
Q  140 aac 142  Q
    |||    
T  13224803 aac 13224805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 43012727 - 43012677
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    ||||||||||||||||| ||| ||| |||||||||||||||||||| ||||    
T  43012727 caaaatcaattctactctaaatcaaacaaacatgtcaaaatcaattttaca 43012677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 7667982 - 7668035
Alignment:
Q  55 tcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctaga 108  Q
    |||||||||||||| |||||||||| |||||  ||| |||||||||||||||||    
T  7667982 tcaattctactcaagagcaaccaaagatgtctgaattaattctacacctctaga 7668035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 148
Target Start/End: Complemental strand, 5468797 - 5468666
Alignment:
Q  16 aaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataatt 115  Q
    |||||||||| ||||||||| || | ||| ||| || |||||||| || || | | ||| ||||||||||| |||||| |||||||||||||||  ||||    
T  5468797 aaatcctagtctcaagtagaatcaaatatggaggcagaatcaattataatcgacaacaatcaaacatgtcataatcaa-tctacacctctagaatcaatt 5468699  T
Q  116 ttggttactccaaaagtggaaccaaacatacac 148  Q
     ||    ||  ||||||||||||||||||||||    
T  5468698 atgacccctttaaaagtggaaccaaacatacac 5468666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 9818773 - 9818717
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatca 57  Q
    |||||||||||||||||||| ||| |||||||||| || ||||| ||| ||||||||    
T  9818773 agaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaatca 9818717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 25548505 - 25548457
Alignment:
Q  53 aatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacac 101  Q
    |||||||| |||| |||||||| ||||||||||| ||||||||||||||    
T  25548505 aatcaattttacttaaaagcaatcaaacatgtcataatcaattctacac 25548457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 31906296 - 31906200
Alignment:
Q  3 aatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctac 99  Q
    ||||||||| |||||||| ||| |||||||| | || |||||||||  |||| |||||  || |||||  || ||||||||||| ||||||||||||    
T  31906296 aatcaaaagttacaaatcatagcttcaagtaaaatcaattatagaggtaaaaacaattaaacccaaaaataatcaaacatgtcataatcaattctac 31906200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 1105429 - 1105370
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaa 109  Q
    ||||||||||||||||  | | || ||||| ||||||||||||||| |||||||||||||    
T  1105429 caaaatcaattctacttgagaacagccaaaaatgtcaaaatcaattatacacctctagaa 1105370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 88 - 147
Target Start/End: Original strand, 38845644 - 38845703
Alignment:
Q  88 aatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacataca 147  Q
    ||||||||||||||||| ||||  |||||||||  ||| | |||||||||||||||||||    
T  38845644 aatcaattctacacctccagaatcaattttggtctctctagaagtggaaccaaacataca 38845703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 118
Target Start/End: Original strand, 11911903 - 11911972
Alignment:
Q  49 acaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttg 118  Q
    |||||||||||||||||  ||  |||| ||||| ||||||||||||| |||| ||||||||  |||||||    
T  11911903 acaaaatcaattctactttaacacaactaaacaagtcaaaatcaattttacatctctagaatcaattttg 11911972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 15955447 - 15955484
Alignment:
Q  59 ttctactcaaaagcaaccaaacatgtcaaaatcaattc 96  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  15955447 ttctactaaaaagcaaccaaacatgtcagaatcaattc 15955484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 370808 - 370864
Alignment:
Q  53 aatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaa 109  Q
    ||||||||||||| |||| ||||||||||| ||| |||||||| |||| ||| ||||    
T  370808 aatcaattctacttaaaaacaaccaaacatatcataatcaattttacatctcgagaa 370864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 6949671 - 6949623
Alignment:
Q  51 aaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctac 99  Q
    |||||||||||||||||||| ||||||||  ||||| ||| ||||||||    
T  6949671 aaaatcaattctactcaaaaacaaccaaagttgtcagaattaattctac 6949623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 140
Target Start/End: Complemental strand, 16016963 - 16016879
Alignment:
Q  56 caattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaa 140  Q
    ||||||||||  | ||||| |||||  ||||||||||||| |||||||||||||  || ||||| | ||  ||||||||||||||    
T  16016963 caattctactagagagcaatcaaaccagtcaaaatcaattatacacctctagaataaagtttggcttctttaaaagtggaaccaa 16016879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 16293997 - 16294033
Alignment:
Q  70 agcaaccaaacatgtcaaaatcaattctacacctcta 106  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  16293997 agcaaccaaacatgttaaaatcaattctacacttcta 16294033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 27374349 - 27374433
Alignment:
Q  13 tacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattct 97  Q
    |||||||||||  |||||||||| || ||| |  || |||||| |||||||||  ||| ||||||||||||||| || |||||||    
T  27374349 tacaaatcctaacttcaagtagaatcaattcttaaggcaaaattaattctacttgaaaacaaccaaacatgtcagaaacaattct 27374433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 32980534 - 32980437
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtgg-aaccaaacatacac 148  Q
    |||||||| ||||||| |||| |||| |||||||| |||||||||| || ||||  ||||  |||||||| |  |||||||| || ||||||||||||||    
T  32980534 caaaatcacttctactaaaaaacaacaaaacatgttaaaatcaattttatacct--agaatcaattttggcttgtccaaaagcgggaaccaaacatacac 32980437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 39514862 - 39514830
Alignment:
Q  77 aaacatgtcaaaatcaattctacacctctagaa 109  Q
    ||||| |||||||||||||||||||||||||||    
T  39514862 aaacaagtcaaaatcaattctacacctctagaa 39514830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 47)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 35065102 - 35064999
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    |||||||||||  |||||| |||| |||||||| | || ||||| ||| ||||||||||||||||| |||||||||||| |||||| |||||||||||||    
T  35065102 agaatcaaaagtcacaaatactagcttcaagtaaaatcaattattgaggcaaaatcaattctactcgaaagcaaccaaaaatgtcataatcaattctaca 35065003  T
Q  101 cctc 104  Q
    ||||    
T  35065002 cctc 35064999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 2635153 - 2635055
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    |||||||| ||||||| |||||||| |||||||||||||||||||| ||||| |||||||  |||||||||  ||| ||||||| ||||||||||||||    
T  2635153 caaaatcagttctacttaaaagcaatcaaacatgtcaaaatcaattttacacttctagaatcaattttggtccctctaaaagtgaaaccaaacatacac 2635055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 25319080 - 25318989
Alignment:
Q  8 aaagctacaaatcctagtttcaagt-agagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattcta 98  Q
    ||||||||||||||||  ||||||| ||| || ||| | ||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  25319080 aaagctacaaatcctaccttcaagttagaatcaattctggagacaaaatcaattctactcgagagcaaccaaacatgtcaaaatcaattcta 25318989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 148
Target Start/End: Original strand, 49138933 - 49139028
Alignment:
Q  53 aatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    |||||||| ||||  ||| ||||||||||||||| ||||||||||||||||||||||  ||||||||  |||  | ||||||||||||||||||||    
T  49138933 aatcaattttacttgaaaacaaccaaacatgtcagaatcaattctacacctctagaatcaattttggccactttagaagtggaaccaaacatacac 49139028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 33560620 - 33560710
Alignment:
Q  5 tcaaaagctacaaatcctag-tttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaat 94  Q
    |||||||||||||||||||| ||||   |||| || ||| ||||| ||||||||||||||||| | |||||||||||||||||||||||||    
T  33560620 tcaaaagctacaaatcctagctttcggttagaatcaattctagaggcaaaatcaattctactcgagagcaaccaaacatgtcaaaatcaat 33560710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 150
Target Start/End: Complemental strand, 1099826 - 1099726
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacacg 149  Q
    ||||||||||||| ||| | |||||||||| || |||||||||||||| || ||||||||  |||||||  | |||||||||||| |||||||||| |||    
T  1099826 caaaatcaattctgctcgagagcaaccaaatatttcaaaatcaattctgcatctctagaatcaattttgtctcctccaaaagtggtaccaaacataaacg 1099727  T
Q  150 a 150  Q
    |    
T  1099726 a 1099726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 16551990 - 16551853
Alignment:
Q  7 aaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctcta 106  Q
    |||| ||||||||||||| |||||| ||| || ||  ||||| || |||||  |||| || | |||||||| |||||||| |||||||||||||||||||    
T  16551990 aaaaactacaaatcctagcttcaaggagaatccatcctagaggcagaatcagctctattcgacagcaaccatacatgtcagaatcaattctacacctcta 16551891  T
Q  107 gaaataattttggttactccaaaagtggaaccaaacat 144  Q
     ||  ||||||| |  |||  |||||||||||||||||    
T  16551890 aaatcaattttgatctctctgaaagtggaaccaaacat 16551853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 26617712 - 26617781
Alignment:
Q  40 attatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaa 109  Q
    ||||| ||| |||||||||||||| | ||||||| ||||||||||||||||||||| ||||| |||||||    
T  26617712 attatggaggcaaaatcaattctattgaaaagcatccaaacatgtcaaaatcaattttacacatctagaa 26617781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 50 - 146
Target Start/End: Complemental strand, 32680752 - 32680655
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttgg-ttactccaaaagtggaaccaaacatac 146  Q
    ||||||||||||| || |||||||||||| |||| |||||||||||||| ||   |||||  |||||||| || ||| ||||||||||||||||||||    
T  32680752 caaaatcaattctgcttaaaagcaaccaatcatggcaaaatcaattctaaacaagtagaaccaattttggcttcctcaaaaagtggaaccaaacatac 32680655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 24338566 - 24338492
Alignment:
Q  75 ccaaacatgtcaaaatcaattctacacctctagaaataa--ttttggttactccaaaagtggaaccaaacatacac 148  Q
    |||||||||||||||||||| | ||||||||| ||||||  |||||  ||||||||||||||||||||||||||||    
T  24338566 ccaaacatgtcaaaatcaatccaacacctcta-aaataaagttttgactactccaaaagtggaaccaaacatacac 24338492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 32818416 - 32818500
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtc 85  Q
    ||||||||||||||||||| |||| ||||| |||| || ||| | ||| ||||||||||||||||| |||| ||||||| |||||    
T  32818416 agaatcaaaagctacaaattctagcttcaaatagaatcaattctggaggcaaaatcaattctactcgaaagaaaccaaatatgtc 32818500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 145
Target Start/End: Complemental strand, 41058916 - 41058821
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacata 145  Q
    ||||||||||| ||||| ||| || |||||||||||| |||||||||||| ||| |||||  ||||| || |  || |||||||||||||||||||    
T  41058916 caaaatcaattttactcgaaaacatccaaacatgtcacaatcaattctactcctttagaatcaatttaggctcatctaaaagtggaaccaaacata 41058821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 42152979 - 42153030
Alignment:
Q  53 aatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctc 104  Q
    |||||||||||||||| ||||| ||||||||||||||| |||||||||||||    
T  42152979 aatcaattctactcaagagcaatcaaacatgtcaaaataaattctacacctc 42153030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 145
Target Start/End: Complemental strand, 39438752 - 39438683
Alignment:
Q  76 caaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacata 145  Q
    |||||||||||||||||||| |||||||| | ||  |||||||  ||||||||| |||||||||||||||    
T  39438752 caaacatgtcaaaatcaattttacacctccaaaatcaattttgactactccaaacgtggaaccaaacata 39438683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 43868169 - 43868092
Alignment:
Q  7 aaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgt 84  Q
    |||||||||||||| || |||||| |||| || ||| | |||||||||| |||||||||  |||||||||||||||||    
T  43868169 aaaagctacaaatcttaatttcaaatagaatcaattgtggagacaaaattaattctactagaaagcaaccaaacatgt 43868092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 50061674 - 50061825
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatg-------tcaaaatcaa 93  Q
    |||||||||| ||||||||||||  |||||||||| || ||| | ||| ||||||||||||||||  | | ||| || |||||       ||| ||||||    
T  50061674 agaatcaaaaactacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctactggacaacaatcagacatgttagaactcagaatcaa 50061773  T
Q  94 ttctacacctctagaaataattttggttactccaaaagtggaaccaaacata 145  Q
    ||||| ||||| ||||  |||||||||| ||| | |||||||||||||||||    
T  50061774 ttctagacctccagaatcaattttggttcctctagaagtggaaccaaacata 50061825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 9064270 - 9064162
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtca-aaatcaattctac 99  Q
    |||||||||| |||||||| ||||||||||||||| || ||||| | | |||| | ||||||| || | | ||||||||||||| | || | ||||||||    
T  9064270 agaatcaaaaactacaaattctagtttcaagtagaatcaattatggtggcaaatttaattctattcgacaacaaccaaacatgttagaattaaattctac 9064171  T
Q  100 acctctaga 108  Q
    |||||||||    
T  9064170 acctctaga 9064162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 33456413 - 33456313
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    |||||||||||||||||||| |||||| || |||| |  ||| |||||||  ||||||||||| || | | |||| ||| |||||| |||||||||||||    
T  33456413 agaatcaaaagctacaaatcatagttttaaatagaataaattctagagacggaatcaattctagtcgacaccaacaaaatatgtcataatcaattctaca 33456314  T
Q  101 c 101  Q
    |    
T  33456313 c 33456313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 2326857 - 2327004
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    ||||| ||||| ||||||| |||||||| | |||| || ||| | | |||| || ||||||| |   ||| ||||||||||||||| ||||||||||| |    
T  2326857 agaattaaaagttacaaattctagtttcgaatagaatcaattctggtgacagaaacaattcttcatgaaatcaaccaaacatgtcataatcaattctata 2326956  T
Q  101 cctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    |||| | || ||||| ||||  | | ||||||| ||||||||||||||    
T  2326957 cctccataattaattatggtcccactaaaagtgaaaccaaacatacac 2327004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 144
Target Start/End: Original strand, 21691318 - 21691409
Alignment:
Q  53 aatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacat 144  Q
    ||||||| |||||| | | |||||||| |||||| ||||||||||||||||| ||||  |||| ||||  ||| | ||||||||||||||||    
T  21691318 aatcaatactactcgacaacaaccaaatatgtcagaatcaattctacacctccagaatcaattctggtccctctagaagtggaaccaaacat 21691409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 145
Target Start/End: Complemental strand, 45329816 - 45329741
Alignment:
Q  70 agcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacata 145  Q
    ||||||||||||||| ||| |||||| |||||||||| ||  |||||||| |  | ||||||||||||||||||||    
T  45329816 agcaaccaaacatgttaaagtcaattttacacctctataatcaattttggctcttacaaaagtggaaccaaacata 45329741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 46344878 - 46344980
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    |||||||||||||  |||| |||  |||||||||| |  ||||| ||| ||||||||||| ||||  ||||||||||||||||||| ||| |||| ||||    
T  46344878 agaatcaaaagctggaaattctaacttcaagtagaata-attatggaggcaaaatcaattatacttgaaagcaaccaaacatgtcagaattaattataca 46344976  T
Q  101 cctc 104  Q
    ||||    
T  46344977 cctc 46344980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 55085125 - 55085196
Alignment:
Q  78 aacatgtcaaaatcaattctacacctctagaaataattttggt-tactccaaaagtggaaccaaacatacac 148  Q
    ||||||| ||||||||||||| ||||||||||  ||||||  | | ||||||||||||||||||||||||||    
T  55085125 aacatgttaaaatcaattctatacctctagaatcaatttttttctcctccaaaagtggaaccaaacatacac 55085196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 2174297 - 2174347
Alignment:
Q  46 gagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattc 96  Q
    ||||||||||||||||||||||  |||| |||||||| |||||||||||||    
T  2174297 gagacaaaatcaattctactcactagcatccaaacatttcaaaatcaattc 2174347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 120
Target Start/End: Complemental strand, 9134647 - 9134529
Alignment:
Q  3 aatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacc 102  Q
    |||||||||||||||||  ||| |||||||||  || ||| | ||   ||||||||||| |||| | | |||| ||||||||||||||||| | ||||||    
T  9134647 aatcaaaagctacaaattttagcttcaagtaggatcaattctggaagtaaaatcaattccactcgataacaactaaacatgtcaaaatcaaatatacacc 9134548  T
Q  103 tctagaaa-taattttggt 120  Q
    || ||||| ||||||||||    
T  9134547 tccagaaattaattttggt 9134529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 20712640 - 20712546
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacat 144  Q
    |||||||||||||| |  | ||||| ||| ||||| ||||||||||||| ||||||||||  |||||||  |  |||| ||||||||||||||||    
T  20712640 caaaatcaattctatttgagagcaaacaagcatgtaaaaatcaattctaaacctctagaatcaattttgcctcttccataagtggaaccaaacat 20712546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 146
Target Start/End: Complemental strand, 32100286 - 32100192
Alignment:
Q  52 aaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatac 146  Q
    |||| |||||||| | | || |||||||  ||||||||||||||| | |||||||||| ||||||||| | ||||| || |||||| ||||||||    
T  32100286 aaataaattctacacgagagtaaccaaatttgtcaaaatcaattcaatacctctagaattaattttggcttctccataaatggaactaaacatac 32100192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 12926880 - 12926822
Alignment:
Q  49 acaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaa 109  Q
    |||||||| |||||||||||||||||||||| |||||  ||| |||||||||| |||||||    
T  12926880 acaaaatcgattctactcaaaagcaaccaaatatgtc--aattaattctacacttctagaa 12926822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 35423217 - 35423128
Alignment:
Q  5 tcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaat 94  Q
    ||||||| || ||||  |||||||||||||| || |||||| ||| |||||||||| |||| |||| |||| ||| |||||| |||||||    
T  35423217 tcaaaagttataaattttagtttcaagtagaatcaattataaagataaaatcaattttacttaaaaacaactaaatatgtcagaatcaat 35423128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 50358134 - 50358207
Alignment:
Q  75 ccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    |||| ||||||||||||||||||||||||||||||  ||||||   | | ||| |||||||||| |||||||||    
T  50358134 ccaagcatgtcaaaatcaattctacacctctagaatcaattttttctccaccagaagtggaaccgaacatacac 50358207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 25318808 - 25318749
Alignment:
Q  49 acaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaa 109  Q
    |||||||||||||||||||||| || |  |||||||| ||||||||| |||||||||||||    
T  25318808 acaaaatcaattctactcaaaaacatcttaacatgtc-aaatcaattatacacctctagaa 25318749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 43076027 - 43075955
Alignment:
Q  76 caaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    |||| |||| |||||||||||| |||||||||||  |||||||  | |||||||||  |||||||||||||||    
T  43076027 caaatatgttaaaatcaattctgcacctctagaatcaattttgcctcctccaaaagcagaaccaaacatacac 43075955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 148
Target Start/End: Original strand, 17898359 - 17898437
Alignment:
Q  70 agcaaccaaacatgtcaaaa-tcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    |||||| |||||| |||||| ||||||||||| |||||||| ||||||||| | ||| |||| ||||||| |||||||||    
T  17898359 agcaacaaaacatttcaaaaatcaattctacatctctagaattaattttgg-tcctctaaaactggaaccgaacatacac 17898437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 22683853 - 22683806
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattct 97  Q
    ||||||||||| ||||||||| ||| | ||||||||||||||||||||    
T  22683853 caaaatcaattttactcaaaaacaaaccaacatgtcaaaatcaattct 22683806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 95
Target Start/End: Complemental strand, 37353442 - 37353391
Alignment:
Q  44 tagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaatt 95  Q
    |||||||||| |||||||||||| ||| ||| ||||||||| ||||||||||    
T  37353442 tagagacaaagtcaattctactcgaaaacaagcaaacatgttaaaatcaatt 37353391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 95
Target Start/End: Complemental strand, 37365416 - 37365365
Alignment:
Q  44 tagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaatt 95  Q
    |||||||||| |||||||||||| ||| ||| ||||||||| ||||||||||    
T  37365416 tagagacaaagtcaattctactcgaaaacaagcaaacatgttaaaatcaatt 37365365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 148
Target Start/End: Original strand, 54705437 - 54705584
Alignment:
Q  2 gaatcaaaagctacaaatcctagtttcaag-tagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    ||||||||||||||||| ||||| |||||| |||  || ||||| ||| ||||||||||| ||||    ||||||||||||||||  |||||||| || |    
T  54705437 gaatcaaaagctacaaaccctagcttcaagttagtatcaattattgaggcaaaatcaattatacttgtgagcaaccaaacatgtctgaatcaattatata 54705536  T
Q  101 cctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    |||  | |   ||||||||   ||| | ||||||||||||||||||||    
T  54705537 ccttcatagccaattttggcccctctagaagtggaaccaaacatacac 54705584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 8330155 - 8330013
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagt-agagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgt-caaaatcaattcta 98  Q
    ||||||||||||| ||| | |||| ||||||| ||| || ||||| ||| || |||||||| ||||  | |||||||||||||||  ||||| |||| |     
T  8330155 agaatcaaaagctccaatttctagcttcaagttagaatccattatggaggcagaatcaattttacttgagagcaaccaaacatgtaaaaaattaattatt 8330056  T
Q  99 cacctctagaaataattttggttactccaaaagtggaaccaaa 141  Q
    |||||||||||  |||| ||| | ||||| ||||| |||||||    
T  8330055 cacctctagaatcaattctggctcctccagaagtgaaaccaaa 8330013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 11271587 - 11271685
Alignment:
Q  5 tcaaaagctacaaatcctagtttcaag-tagagtcgattatagagacaaaatc-aattctactcaaaagcaaccaaacatgtcaaaatcaattctacac 101  Q
    |||||||||||||||||||| |||||| |||| || ||| | ||| ||||||| ||| | |||| | |||||||| || |||||||||||||| |||||    
T  11271587 tcaaaagctacaaatcctagcttcaagttagaatcaattctggaggcaaaatcaaataccactcgacagcaaccatacttgtcaaaatcaattttacac 11271685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 95
Target Start/End: Complemental strand, 29728989 - 29728947
Alignment:
Q  53 aatcaattctactcaaaagcaaccaaacatgtcaaaatcaatt 95  Q
    |||||||||||||| | ||||||||||| ||||||||||||||    
T  29728989 aatcaattctactcgagagcaaccaaacttgtcaaaatcaatt 29728947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 148
Target Start/End: Original strand, 47596391 - 47596489
Alignment:
Q  51 aaaatcaattctactcaaaagcaaccaaacatgtcaa-aatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    ||||| |||| ||||| | || || |||||||||||| |||||||||| ||||| || ||  ||||||| || ||||||||||| ||||| ||||||||    
T  47596391 aaaattaattatactctagagaaatcaaacatgtcaacaatcaattctccacctttaaaatcaattttgattcctccaaaagtgaaaccatacatacac 47596489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 29779106 - 29779199
Alignment:
Q  7 aaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    ||||||||||||| |||| |||||||||| || ||| || |  |||||||||||||  |  ||| || |||||||||  |||||||||||||||    
T  29779106 aaaagctacaaattctagcttcaagtagaatcaattctacaagcaaaatcaattctcttttaaatcatccaaacatgataaaatcaattctaca 29779199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 148
Target Start/End: Original strand, 47315092 - 47315189
Alignment:
Q  51 aaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    ||||||||||| |||| | || ||| ||||||||||||||  |||||||| ||| ||||  |||||||| |   | |||||||||| |||||||||||    
T  47315092 aaaatcaattcaactccagaggaacaaaacatgtcaaaatggattctacaactcaagaatcaattttggctctgctaaaagtggaatcaaacatacac 47315189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 142
Target Start/End: Original strand, 471963 - 472055
Alignment:
Q  51 aaaatcaattctactcaaaagcaaccaaacatgtcaaaa-tcaattctacacctctagaaataattttggttactccaaaagtggaaccaaac 142  Q
    |||||||||||||||| | | ||  |||||||||||||| |||||||||||| |||||||  || |||   ||||||| ||||||||| ||||    
T  471963 aaaatcaattctactcgacaacattcaaacatgtcaaaaatcaattctacacttctagaatcaaatttacctactccagaagtggaactaaac 472055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 30889824 - 30889764
Alignment:
Q  3 aatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattcta 63  Q
    ||||||||  |||||||| || || |||||||| || ||| ||||||||||||||||||||    
T  30889824 aatcaaaatttacaaatcttaattgcaagtagaatcaattctagagacaaaatcaattcta 30889764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 31013850 - 31013926
Alignment:
Q  72 caaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    |||||||||||||||||||||||| ||||| |||| ||  |||| ||||| ||   ||| | |||||||||||||||    
T  31013850 caaccaaacatgtcaaaatcaattttacacatctaaaatcaattatggttcctttgaaaatagaaccaaacatacac 31013926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 33347228 - 33347308
Alignment:
Q  13 tacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaa 93  Q
    |||||||||||  |||||||||| |  ||| ||||| |||||| | || ||||||||||| |||||| |||||| ||||||    
T  33347228 tacaaatcctaccttcaagtagaattaattctagaggcaaaattacttatactcaaaagccaccaaatatgtcataatcaa 33347308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 7629829 - 7629754
Alignment:
Q  73 aaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    ||||||||||| |||||||||||||||||||||||||  ||| |||| | ||||||||||||||||||||||||||    
T  7629829 aaccaaacatgacaaaatcaattctacacctctagaatcaatcttggctcctccaaaagtggaaccaaacatacac 7629754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 15928519 - 15928588
Alignment:
Q  40 attatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaa 109  Q
    |||||||||| | |||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||    
T  15928519 attatagagatataatcaattctactcaacaacaaccaaacatgtcaaaatcaattctacacctccagaa 15928588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 6327115 - 6327257
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    |||||||||| ||||||||  |||||||||||||| || ||| |||| ||| |||||||| || |||| | |||||||||||||||      |||||| |    
T  6327115 agaatcaaaaactacaaattttagtttcaagtagaatcaattctagaaacataatcaattttaatcaacaacaaccaaacatgtca-----gattctaaa 6327209  T
Q  101 cctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    |||||||||  ||||||| || ||| ||||||| ||||||||||||||    
T  6327210 cctctagaatcaattttgttttctctaaaagtgaaaccaaacatacac 6327257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 2002741 - 2002849
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    ||||| |||| ||||||||||||| |||||||||| ||   | | ||| ||||||||||||||||  |||||||||||  ||||||| |||||||||||     
T  2002741 agaatgaaaaactacaaatcctagcttcaagtagaatcaggtctggaggcaaaatcaattctactagaaagcaaccaagtatgtcaacatcaattctact 2002840  T
Q  101 cctctagaa 109  Q
    |||||||||    
T  2002841 cctctagaa 2002849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 37420263 - 37420351
Alignment:
Q  21 ctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaa 109  Q
    |||| ||| |||||| || ||| ||||| ||||||||||||||||| |  | | |||||||||||||||||||||||||||||||||||    
T  37420263 ctagattctagtagaatcaattctagaggcaaaatcaattctactctagggaagccaaacatgtcaaaatcaattctacacctctagaa 37420351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 1976931 - 1977046
Alignment:
Q  21 ctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggt 120  Q
    |||||||  |||||| || ||| | ||||||||||||||||||||   ||| || ||||||||||||||||||||  | ||||||||||  ||||||||     
T  1976931 ctagtttatagtagaatcaattttggagacaaaatcaattctacttttaagaaagcaaacatgtcaaaatcaatttcaaacctctagaatcaattttggc 1977030  T
Q  121 tactccaaaagtggaa 136  Q
    | ||||||||||||||    
T  1977031 tcctccaaaagtggaa 1977046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 70 - 145
Target Start/End: Complemental strand, 9943393 - 9943318
Alignment:
Q  70 agcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacata 145  Q
    ||||||||||||||| |||||||||| |||||||  ||||  |||||||||| ||||||| |||||||||||||||    
T  9943393 agcaaccaaacatgttaaaatcaattttacaccttcagaatcaattttggttgctccaaatgtggaaccaaacata 9943318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 42741016 - 42740913
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    |||||||||||||||||||| ||| |||||||||| || ||||| |||  ||| ||| | ||| || ||||| ||  |||||||||||||||||||||||    
T  42741016 agaatcaaaagctacaaatcttagcttcaagtagaatcaattatggaggaaaattcagtcctattcgaaagctacggaacatgtcaaaatcaattctaca 42740917  T
Q  101 cctc 104  Q
    ||||    
T  42740916 cctc 42740913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 42982521 - 42982446
Alignment:
Q  73 aaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    |||||||||||||||||||| |||||||  | ||||| |||||| | || ||||||||||||||||||||||||||    
T  42982521 aaccaaacatgtcaaaatcagttctacatgtttagaattaatttggattcctccaaaagtggaaccaaacatacac 42982446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 139
Target Start/End: Original strand, 16013785 - 16013895
Alignment:
Q  29 aagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaa 128  Q
    |||||||||| ||||| ||| |  ||||||||||||   | || ||| |||||||| ||||||||||||||||||||||||  |||||||| | ||||||    
T  16013785 aagtagagtcaattatggaggcttaatcaattctacaatagagaaacgaaacatgttaaaatcaattctacacctctagaataaattttggctcctccaa 16013884  T
Q  129 aagtggaacca 139  Q
    |||| ||||||    
T  16013885 aagtagaacca 16013895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 40582716 - 40582650
Alignment:
Q  73 aaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaacca 139  Q
    |||||||||||| ||||||||||||||||||||||||  |||||||| |  ||||||||||||||||    
T  40582716 aaccaaacatgttaaaatcaattctacacctctagaatcaattttggctcttccaaaagtggaacca 40582650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 50 - 148
Target Start/End: Original strand, 3476525 - 3476625
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgt--caaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacataca 147  Q
    ||||||||||| ||||| | |||||| |||||| |  |||||||||||||||||||||||||  ||| | || |  ||||||||||||||||||||||||    
T  3476525 caaaatcaattttactcgagagcaacgaaacatatatcaaaatcaattctacacctctagaataaatatcggctcttccaaaagtggaaccaaacataca 3476624  T
Q  148 c 148  Q
    |    
T  3476625 c 3476625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 680348 - 680469
Alignment:
Q  26 ttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaa------ttctacacctctagaaataattttgg 119  Q
    |||||||||| || ||| | ||| |||||||| ||||| || |||||||| |||||||||||||| ||      ||||||||||||||||  |||||| |    
T  680348 ttcaagtagaatcaattctggaggcaaaatcagttctattcgaaagcaactaaacatgtcaaaataaaataaaattctacacctctagaatcaattttag 680447  T
Q  120 ttactccaaaagtggaaccaaa 141  Q
     | |||||||||||||||||||    
T  680448 ctcctccaaaagtggaaccaaa 680469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 12037100 - 12036998
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    |||||||||||||||||||  ||||||||| |||| || ||| |||| ||| || ||||||||| | | | ||||||||||||| | ||||| |||||||    
T  12037100 agaatcaaaagctacaaattttagtttcaactagaatcaattctagacacataaccaattctacacgacaacaaccaaacatgttagaatcagttctaca 12037001  T
Q  101 cct 103  Q
    |||    
T  12037000 cct 12036998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 31453422 - 31453340
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatg 83  Q
    |||||||||||  ||||||  ||| |||||||||| || ||||||||| |||||| |||||||||||| | ||||||||||||    
T  31453422 agaatcaaaaggaacaaattttagcttcaagtagaatcaattatagaggcaaaataaattctactcaacatcaaccaaacatg 31453340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 36987207 - 36987257
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    ||||||||||| |||||||||| | ||||||||||||||||||||||||||    
T  36987207 caaaatcaattatactcaaaagaatccaaacatgtcaaaatcaattctaca 36987257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 7630406 - 7630361
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaatt 95  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||    
T  7630406 caaaatcaattctacttgaaagcaaccaaacatgtcaaaatcaatt 7630361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 16518816 - 16518715
Alignment:
Q  3 aatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacc 102  Q
    |||||||||||||||||||||  ||| |||||| || ||| | ||  ||||| ||||||   | |||||||||||||||| ||| |||||||||||||||    
T  16518816 aatcaaaagctacaaatcctatcttctagtagaatcaattctggaagcaaaaccaattcatttgaaaagcaaccaaacatatcagaatcaattctacacc 16518717  T
Q  103 tc 104  Q
    ||    
T  16518716 tc 16518715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 37561742 - 37561638
Alignment:
Q  5 tcaaaagctacaaatcctagtttcaagt-agagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacct 103  Q
    ||||||| |||||||| ||||||||||| ||| || ||||||||| ||||||||| ||||||  |  | |  |||||||||||||||||||| |||||||    
T  37561742 tcaaaaggtacaaatcgtagtttcaagttagaatcaattatagaggcaaaatcaaatctacttgag-gaattcaaacatgtcaaaatcaattttacacct 37561644  T
Q  104 ctagaa 109  Q
    ||||||    
T  37561643 ctagaa 37561638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 16519400 - 16519348
Alignment:
Q  86 aaaatcaattctacacctctagaaataattttggttactccaaaagtggaacc 138  Q
    ||||||||||||||||||||||||  ||||||| || ||||||||||||||||    
T  16519400 aaaatcaattctacacctctagaatcaattttgcttcctccaaaagtggaacc 16519348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 43501130 - 43501083
Alignment:
Q  53 aatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    |||||||||||||  ||||||||||||||||||| |||||||||||||    
T  43501130 aatcaattctacttgaaagcaaccaaacatgtcagaatcaattctaca 43501083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 145
Target Start/End: Complemental strand, 7630159 - 7630055
Alignment:
Q  40 attatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaacca 139  Q
    ||||| ||| ||||| ||||||||||| | || || |||| ||||||||||||||| |||||||| ||||  | |||||| | ||||||  |||||||||    
T  7630159 attatggaggcaaaaccaattctactctagaggaatcaaa-atgtcaaaatcaattttacacctccagaatcagttttggatgctccaatcgtggaacca 7630061  T
Q  140 aacata 145  Q
    ||||||    
T  7630060 aacata 7630055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 33502944 - 33502997
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacct 103  Q
    |||||||| || ||||| | |||||||||||||||||||||||||| |||||||    
T  33502944 caaaatcagttttactcgagagcaaccaaacatgtcaaaatcaattttacacct 33502997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 44148563 - 44148518
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaatt 95  Q
    ||||||||||| || |||| ||||||||||||||||||||||||||    
T  44148563 caaaatcaattatagtcaagagcaaccaaacatgtcaaaatcaatt 44148518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 37649595 - 37649659
Alignment:
Q  76 caaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaa 140  Q
    ||||||||||||||||||||| | ||||| ||||  |||||||  | ||||||||||||||||||    
T  37649595 caaacatgtcaaaatcaattccatacctcaagaatcaattttgactcctccaaaagtggaaccaa 37649659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 43501162 - 43501130
Alignment:
Q  3 aatcaaaagctacaaatcctagtttcaagtaga 35  Q
    |||||||||||||||||||||||||||||||||    
T  43501162 aatcaaaagctacaaatcctagtttcaagtaga 43501130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 147
Target Start/End: Complemental strand, 43717307 - 43717235
Alignment:
Q  75 ccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacataca 147  Q
    ||||||||||||||||||||||||||| |||||||  ||||||     ||||||||||| |||||||| ||||    
T  43717307 ccaaacatgtcaaaatcaattctacacatctagaatcaattttaacacctccaaaagtgaaaccaaacgtaca 43717235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 16488336 - 16488277
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaa 109  Q
    ||||||||||||||| | | ||||||||| ||||||| |||||||  |||||||||||||    
T  16488336 caaaatcaattctacacgagagcaaccaaccatgtcagaatcaatcatacacctctagaa 16488277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 30503247 - 30503148
Alignment:
Q  2 gaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacac 101  Q
    |||||||||||||| |||||| | |||||||||| || ||| | ||| |||||||| |||| ||  ||| ||| | ||||||| | ||||||||||||||    
T  30503247 gaatcaaaagctacgaatcctggcttcaagtagaatcaattttggaggcaaaatcatttcttcttgaaatcaatcgaacatgttagaatcaattctacac 30503148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 42906966 - 42907025
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaa 109  Q
    ||||| ||||||||||| | |||||||||||||| |||||| | || |||||||||||||    
T  42906966 caaaaccaattctactcgagagcaaccaaacatgacaaaattagttatacacctctagaa 42907025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 3352115 - 3352013
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    ||||||||||||| ||| ||| |  |||||||| | || |||||  |||||| |||| |||||||||| | |||| ||| |||||| |||||||| ||||    
T  3352115 agaatcaaaagctgcaattcccaacttcaagtaaaatcaattatgaagacaagatcatttctactcaacaacaacaaaaaatgtcagaatcaattataca 3352016  T
Q  101 cct 103  Q
    |||    
T  3352015 cct 3352013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 148
Target Start/End: Original strand, 3654724 - 3654786
Alignment:
Q  86 aaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    ||||||||||||||||  ||||||  |||| ||  | ||||||||||||||||||||||||||    
T  3654724 aaaatcaattctacactgctagaatcaattatgcctcctccaaaagtggaaccaaacatacac 3654786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 99
Target Start/End: Complemental strand, 11510988 - 11510894
Alignment:
Q  6 caaaagctacaaatcctagtttcaag-tagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctac 99  Q
    ||||| || ||||| |||| |||||| |||| || | ||| ||| ||||||||||||||||| ||| || |||||||| |||||| |||||||||    
T  11510988 caaaaactccaaattctagcttcaagatagaatcaaatatggaggcaaaatcaattctactcgaaaacatccaaacatatcaaaaccaattctac 11510894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 145
Target Start/End: Original strand, 37745995 - 37746069
Alignment:
Q  71 gcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacata 145  Q
    ||||| ||| |||||||||| ||||||||||||||| ||  | |||||| | ||||||| |||||| ||||||||    
T  37745995 gcaacaaaaaatgtcaaaattaattctacacctctacaatcagttttggcttctccaaatgtggaatcaaacata 37746069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 42774958 - 42775028
Alignment:
Q  78 aacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    ||||||||||||||||||||| ||||||||||  |||||||| ||| | | ||||  ||||| ||||||||    
T  42774958 aacatgtcaaaatcaattctatacctctagaatcaattttggctaccctagaagttaaaccacacatacac 42775028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 44670989 - 44671058
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttgg 119  Q
    ||||||||||||||||  | | ||| |||||||| ||||| ||||||||| |||||||||  ||||||||    
T  44670989 caaaatcaattctactttagaacaatcaaacatgccaaaagcaattctacccctctagaatcaattttgg 44671058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 10280731 - 10280683
Alignment:
Q  46 gagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaat 94  Q
    |||||| ||||||||||| |||||| |||| |||||||||| |||||||    
T  10280731 gagacataatcaattctattcaaaaacaacaaaacatgtcataatcaat 10280683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 145
Target Start/End: Original strand, 33047650 - 33047742
Alignment:
Q  53 aatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacata 145  Q
    ||||||||||||||   ||||| ||||||||| | ||||||||||||||||| | ||  |||||||||  ||| | ||| | |||||||||||    
T  33047650 aatcaattctactcgtcagcaatcaaacatgtgagaatcaattctacacctccaaaatcaattttggtccctctagaagcgaaaccaaacata 33047742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 44439219 - 44439171
Alignment:
Q  71 gcaaccaaacatgtcaaaatcaattctacacctctagaaataattttgg 119  Q
    |||||||||||||||||||| ||||| |||||| |||||  ||||||||    
T  44439219 gcaaccaaacatgtcaaaattaattcaacacctttagaatcaattttgg 44439171  T

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Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 38123746 - 38123836
Alignment:
Q  53 aatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaaca 143  Q
    |||||||||||||  | || |||||||||||| ||||||||||||||| ||||||||  |||||||| | |||||||||||||||||||||    
T  38123746 aatcaattctactttataggaaccaaacatgttaaaatcaattctacatctctagaatcaattttggctcctccaaaagtggaaccaaaca 38123836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 12306724 - 12306667
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctag 107  Q
    ||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||    
T  12306724 caaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattctacacctctag 12306667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 53 - 118
Target Start/End: Complemental strand, 17111862 - 17111797
Alignment:
Q  53 aatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttg 118  Q
    |||||||||||||| ||||||||||||||||||| ||||||||| ||| |||||||| ||||||||    
T  17111862 aatcaattctactcgaaagcaaccaaacatgtcagaatcaattcgacatctctagaattaattttg 17111797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 12306967 - 12306913
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctc 104  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| | ||||||    
T  12306967 caaaatcaattctactcaagagcaaccaaacatgtcaaaatcaattttgcacctc 12306913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 15050282 - 15050185
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    |||||||||||||||   | || ||||||||| ||||||||||||||| ||| |||||||  |||||||| | |||| |||||||||||||||||||||    
T  15050282 caaaatcaattctacatgagagtaaccaaacaggtcaaaatcaattcttcacttctagaatcaattttggctcctcc-aaagtggaaccaaacatacac 15050185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 45004975 - 45004906
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttgg 119  Q
    ||||||||||| ||||  | || |||||||||||||||||||||||||||||||||||||  ||||||||    
T  45004975 caaaatcaattatactagagagtaaccaaacatgtcaaaatcaattctacacctctagaatcaattttgg 45004906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 24951156 - 24951239
Alignment:
Q  10 agctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaa 93  Q
    ||||||||||| ||| || ||||||| |||||| || |||||||||||||| |||||||||  ||||||||||  |||||||||    
T  24951156 agctacaaatcttagatttaagtagaatcgattctaaagacaaaatcaattatactcaaaactaaccaaacataacaaaatcaa 24951239  T

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Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 36271012 - 36270911
Alignment:
Q  8 aaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctag 107  Q
    |||||||||||||| |  |||||||||| |  ||| ||||| ||||||||||||||||  | || ||||||||||  |||||||||||  ||||||||||    
T  36271012 aaagctacaaatcccaacttcaagtagaataaattctagaggcaaaatcaattctactagagagaaaccaaacatcacaaaatcaatttcacacctctag 36270913  T
Q  108 aa 109  Q
    ||    
T  36270912 aa 36270911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 40491617 - 40491518
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    |||||||||||||||||| | ||  ||||||||||||| ||| |  || ||||||||||| |  || ||||||||||| ||||| | |||||||||||||    
T  40491617 agaatcaaaagctacaaaacttaacttcaagtagagtcaattctgaaggcaaaatcaattatcttcgaaagcaaccaaccatgttagaatcaattctaca 40491518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 147
Target Start/End: Original strand, 598071 - 598137
Alignment:
Q  81 atgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacataca 147  Q
    |||||||||||||||| ||||||||||||  |||| || || |||||||||||||  ||||||||||    
T  598071 atgtcaaaatcaattccacacctctagaatcaattctgctttctccaaaagtggagtcaaacataca 598137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 883418 - 883345
Alignment:
Q  76 caaacatgtcaaaatcaattctacacctctagaaataa-ttttggttactccaaaagtggaaccaaacatacac 148  Q
    |||| ||||||||||||| |||||||||||||||  || |||| |||  | |||||||||||||||||||||||    
T  883418 caaatatgtcaaaatcaactctacacctctagaatcaatttttcgttttttcaaaagtggaaccaaacatacac 883345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 1242747 - 1242674
Alignment:
Q  76 caaacatgtcaaaatcaattctacacctctagaaataa-ttttggttactccaaaagtggaaccaaacatacac 148  Q
    |||| ||||||||||||| |||||||||||||||  || |||| |||  | |||||||||||||||||||||||    
T  1242747 caaatatgtcaaaatcaactctacacctctagaatcaatttttcgttttttcaaaagtggaaccaaacatacac 1242674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 41788305 - 41788260
Alignment:
Q  53 aatcaattctactcaaaagcaaccaaacatgtcaaaatcaattcta 98  Q
    ||||| |||||||||| |||||||||||||| ||||||||||||||    
T  41788305 aatcatttctactcaagagcaaccaaacatgccaaaatcaattcta 41788260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 45005010 - 45004965
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaatt 95  Q
    |||||||||||||| || | ||||||||||||||||||||||||||    
T  45005010 caaaatcaattctattcgagagcaaccaaacatgtcaaaatcaatt 45004965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 5267774 - 5267834
Alignment:
Q  51 aaaatcaattctactcaaaag-caaccaaacatgtcaaaa-tcaattctacacctctagaa 109  Q
    ||||||||||||||| ||||  |||||||||||||||||| |||||| |||||||||||||    
T  5267774 aaaatcaattctactaaaaaaacaaccaaacatgtcaaaaatcaattatacacctctagaa 5267834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 5489894 - 5489986
Alignment:
Q  3 aatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaatt 95  Q
    ||||||||||| ||| | ||||  ||||||||| || ||| | ||| |||||| |||||||||||  ||||||||||||||| | ||||||||    
T  5489894 aatcaaaagctccaatttctagcatcaagtagaatcaattttggaggcaaaattaattctactcaggagcaaccaaacatgtaagaatcaatt 5489986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 7087386 - 7087454
Alignment:
Q  49 acaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataatttt 117  Q
    |||||||||||||||||| ||| ||  ||||||||||||| | ||||| |||| ||||||| |||||||    
T  7087386 acaaaatcaattctactcgaaaacattcaaacatgtcaaagtgaattccacacttctagaattaatttt 7087454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 22195903 - 22195784
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    ||||||||||| |||||||| ||| || ||||| | || ||| |   |||| |||||||||||||| | |  || ||||||||||| ||| |||| ||||    
T  22195903 agaatcaaaagttacaaatcatagcttaaagtaaaatcaattttgaggacataatcaattctactcgacaataatcaaacatgtcataattaattttaca 22195804  T
Q  101 cctctagaaataattttggt 120  Q
    |||||||||  |||||||||    
T  22195803 cctctagaatcaattttggt 22195784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 18228155 - 18228105
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    ||||||||||| |||| |||| ||||||||||| | |||||||||||||||    
T  18228155 caaaatcaattttacttaaaaacaaccaaacatttgaaaatcaattctaca 18228105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 22310760 - 22310846
Alignment:
Q  49 acaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtgga 135  Q
    ||||||||||||||| || | || |||||||||| |||||||||||| |||| || |||||  |||||| | |||| ||| ||||||    
T  22310760 acaaaatcaattctattcgagagtaaccaaacatatcaaaatcaattatacatctttagaatcaattttagctacttcaagagtgga 22310846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 26984533 - 26984635
Alignment:
Q  8 aaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctac-acctcta 106  Q
    ||||||||||||| ||| |||||||||| || ||| || | |||||||||| ||||||  ||| ||  |||||||   |||||||||||||| |||||||    
T  26984533 aaagctacaaatcttagcttcaagtagaatcaattctacaaacaaaatcaagtctactttaaatcattcaaacatcataaaatcaattctacaacctcta 26984632  T
Q  107 gaa 109  Q
    |||    
T  26984633 gaa 26984635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 28430288 - 28430338
Alignment:
Q  53 aatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacct 103  Q
    |||||||||||||||||| |||  |||||| |||||||||||| |||||||    
T  28430288 aatcaattctactcaaaaacaattaaacatatcaaaatcaattttacacct 28430338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 95
Target Start/End: Complemental strand, 48158878 - 48158836
Alignment:
Q  53 aatcaattctactcaaaagcaaccaaacatgtcaaaatcaatt 95  Q
    |||||||| ||||| | ||||||||||||||||||||||||||    
T  48158878 aatcaattttactcgagagcaaccaaacatgtcaaaatcaatt 48158836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 147
Target Start/End: Complemental strand, 48253136 - 48253061
Alignment:
Q  70 agcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacataca 147  Q
    ||||| |||||||||||||||||||| |||  ||||| ||  ||||||  ||||||||| |||| |||||||||||||    
T  48253136 agcaaacaaacatgtcaaaatcaattttacctctctataatcaatttt--ttactccaacagtgaaaccaaacataca 48253061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 46325636 - 46325567
Alignment:
Q  79 acatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 148  Q
    |||| |||||||||||||||||| || | || ||| ||||||| ||| | ||||| ||||||||||||||    
T  46325636 acatatcaaaatcaattctacacatccaaaattaaatttggtttctctagaagtgaaaccaaacatacac 46325567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 27571901 - 27571797
Alignment:
Q  1 agaatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctaca 100  Q
    ||||||||||||| ||| | |||  |||||||||| || ||| | |||  |||||||||| ||||| | ||||| |||||||||   | |||||||||||    
T  27571901 agaatcaaaagctccaatttctaacttcaagtagaatcaattcttgaggtaaaatcaattatactcgagagcaatcaaacatgtaggagtcaattctaca 27571802  T
Q  101 cctct 105  Q
    |||||    
T  27571801 cctct 27571797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 73 - 144
Target Start/End: Complemental strand, 17393 - 17322
Alignment:
Q  73 aaccaaacatgtcaaaatcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacat 144  Q
    ||||||| |||||| ||||||||||||||||| ||||  |||||||||||||| | ||||||||||||||||    
T  17393 aaccaaatatgtcataatcaattctacacctccagaatcaattttggttactctagaagtggaaccaaacat 17322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 14179 - 14306
Alignment:
Q  21 ctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctctagaaataattttggt 120  Q
    |||| |||||||||| || ||| | | ||||||||||||||||||  ||   || | ||||  |||||||||||||||||| ||||||   ||||||||     
T  14179 ctagcttcaagtagaatcaattcttgtgacaaaatcaattctactttaaccaaatccaacacttcaaaatcaattctacacatctagattcaattttggc 14278  T
Q  121 tactccaaaagtggaaccaaacatacac 148  Q
    |  |||||||||||||||||||||||||    
T  14279 tcttccaaaagtggaaccaaacatacac 14306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 23643 - 23742
Alignment:
Q  5 tcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagcaaccaaacatgtcaaaatcaattctacacctc 104  Q
    |||||||||||||||||||| ||||  |||| |   |||| |||||||||||||||| | || |  |||||||||||||||||||| || | ||||||||    
T  23643 tcaaaagctacaaatcctagcttcagttagaattatttatggagacaaaatcaattccattcgagggcaaccaaacatgtcaaaataaactttacacctc 23742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 145
Target Start/End: Original strand, 12402 - 12498
Alignment:
Q  50 caaaatcaattctactcaaaagcaaccaaacatgtcaaaatca-attctacacctctagaaataattttggttactccaaaagtggaaccaaacata 145  Q
    ||||||||||||||||  | | || |||||||||||||||| |  || ||||||| |||||| |||||||  | ||||||||||| || ||||||||    
T  12402 caaaatcaattctacttgagaacatccaaacatgtcaaaataattttttacacctttagaaacaattttgactcctccaaaagtgaaatcaaacata 12498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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