View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10343_low_5 (Length: 254)
Name: NF10343_low_5
Description: NF10343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10343_low_5 |
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| [»] chr1 (7 HSPs) |
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| [»] scaffold0341 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 28 - 254
Target Start/End: Complemental strand, 6513453 - 6513227
Alignment:
| Q |
28 |
ctactaaaattaacgtaagtgtttatgtagttgtataaaaacgaaggcgaaattttggtcgaatagttttaaaagctagcaatagctgaatctatagccg |
127 |
Q |
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| T |
6513453 |
ctactaaaattaacgtaagtgtttatgtagttgtataaaaacgaaagtgaaattttggttgaatagttttaaaagctagcaatagtcgaatctatagccg |
6513354 |
T |
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| Q |
128 |
gccaaattctttttcaatgaaagctcattctccttgnnnnnnnnnnnnnnnnnnnnnnnnctcattccacattttaatgcttcaaacatccataattatt |
227 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6513353 |
gccaaattctttttcaatgaaagctcattctccttgtaataaaaaataaataaaataaaactcattccacattttaatgcttcaaacatccataattatt |
6513254 |
T |
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| Q |
228 |
gtctgttatttgttatacaatgtcttc |
254 |
Q |
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| T |
6513253 |
gtctgttatttcttaaacaatgtcttc |
6513227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 188 - 254
Target Start/End: Original strand, 6521343 - 6521409
Alignment:
| Q |
188 |
ctcattccacattttaatgcttcaaacatccataattattgtctgttatttgttatacaatgtcttc |
254 |
Q |
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| T |
6521343 |
ctcattccacattttaaagcttgaaacatccataattattgtttgttatttgttatacaatgtcttc |
6521409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 6507392 - 6507326
Alignment:
| Q |
188 |
ctcattccacattttaatgcttcaaacatccataattattgtctgttatttgttatacaatgtcttc |
254 |
Q |
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| T |
6507392 |
ctcattccacattttaaagcttgaaacatccataattgttgtgtgttatttgttatacaatgtcttc |
6507326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 158
Target Start/End: Complemental strand, 6507467 - 6507424
Alignment:
| Q |
115 |
gaatctatagccggccaaattctttttcaatgaaagctcattct |
158 |
Q |
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| T |
6507467 |
gaatctatagccggccaaattctttctcaatgaaagctcattct |
6507424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 6517681 - 6517626
Alignment:
| Q |
199 |
ttttaatgcttcaaacatccataattattgtctgttatttgttatacaatgtcttc |
254 |
Q |
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| T |
6517681 |
ttttaaagcttgaaacatcaataattattgtttgttatttgttaaacaatgtcttc |
6517626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 149
Target Start/End: Complemental strand, 6517785 - 6517696
Alignment:
| Q |
61 |
tataaaaacgaaggcgaaattttggt-cgaatagttttaaaagctagcaatagctgaatctatagccggccaaattctttttcaatgaaa |
149 |
Q |
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| T |
6517785 |
tataaaaaggaaagtgaaattttgtttcaaatagttttaaaaactagcaacagacgaatatatagccggccaaattattttttaatgaaa |
6517696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 145
Target Start/End: Original strand, 6521306 - 6521335
Alignment:
| Q |
116 |
aatctatagccggccaaattctttttcaat |
145 |
Q |
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| T |
6521306 |
aatctatagccggccaaattctttttcaat |
6521335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 1417 - 1351
Alignment:
| Q |
188 |
ctcattccacattttaatgcttcaaacatccataattattgtctgttatttgttatacaatgtcttc |
254 |
Q |
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| T |
1417 |
ctcattccacattttaaagcttgaaacatccataattgttgtgtgttatttgttatacaatgtcttc |
1351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 9071 - 9005
Alignment:
| Q |
188 |
ctcattccacattttaatgcttcaaacatccataattattgtctgttatttgttatacaatgtcttc |
254 |
Q |
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| T |
9071 |
ctcattccacattttaaagcttgaaacatccataattgttgtgtgttatttgttatacaatgtcttc |
9005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 158
Target Start/End: Complemental strand, 1492 - 1449
Alignment:
| Q |
115 |
gaatctatagccggccaaattctttttcaatgaaagctcattct |
158 |
Q |
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| T |
1492 |
gaatctatagccggccaaattctttctcaatgaaagctcattct |
1449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 158
Target Start/End: Complemental strand, 9148 - 9105
Alignment:
| Q |
115 |
gaatctatagccggccaaattctttttcaatgaaagctcattct |
158 |
Q |
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| T |
9148 |
gaatctatagccggccaaattctttctcaatgaaagctcattct |
9105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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