View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10343_low_6 (Length: 252)
Name: NF10343_low_6
Description: NF10343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10343_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 12289988 - 12289751
Alignment:
| Q |
1 |
tacttagaaataatattttgatactattttttgcaaaggtgctttaaataatgttttaaacatttatgnnnnnnnnnnnnnnnnnn-tatgttgacttaa |
99 |
Q |
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| T |
12289988 |
tacttagaaataatattt-gatactattttttgcaaaggtgctttaaataatgttttaaacatttatgaaaaagaaattcaaaaaaatatgttgacttaa |
12289890 |
T |
|
| Q |
100 |
cacgatgaactataactttgttcaagaaaaatgaaaaacgaaagttggtaatttagtatagatggaaaaatatattcaatccatactattttctaataan |
199 |
Q |
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| T |
12289889 |
cacgatgaactataactttgttcaagaaaaatgaaaaacgaaagttggtaatttagtatagatggaaaaatatattcaatccatactattttctaataat |
12289790 |
T |
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| Q |
200 |
nnnnnnatttcacactacatacttatcctctatgcatta |
238 |
Q |
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| T |
12289789 |
ttttttatttcacactacatacttatcctctatgcatta |
12289751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 27916361 - 27916417
Alignment:
| Q |
132 |
gaaaaacgaaagttggtaatttagtatagatggaaaaatatattcaatccatactatt |
189 |
Q |
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| T |
27916361 |
gaaaaacgaaagttagtaatttagtatagatgg-aaaatatattcaattcatactatt |
27916417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 27915400 - 27915462
Alignment:
| Q |
2 |
acttagaaataatattttgatactattttttgcaaaggtgctttaaataatgttttaaacatt |
64 |
Q |
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|||||||||||||||||||| |||| ||||| | ||| |||||| |||||||||| |||||| |
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| T |
27915400 |
acttagaaataatattttgagactagttttttcgtaggagctttatataatgtttttaacatt |
27915462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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