View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10343_low_7 (Length: 240)
Name: NF10343_low_7
Description: NF10343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10343_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 8381612 - 8381822
Alignment:
| Q |
12 |
caaaggaaaatagagacatgcttgaaccaatttataaatatctagttaaaagaaaataaccttcaatttttctaactggaaagcagcgttcattaacctt |
111 |
Q |
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| T |
8381612 |
caaaggaaaatagagacatgcttgaaccaatttataaatatctagttaaaagaaaataaccttcaatttttctaactggaaagcagcgttcattaacctt |
8381711 |
T |
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| Q |
112 |
ctatgctttctccacttttctccctcgtgaattataagaccactaaatagaaatttgaaaatctcatattttggcttttgtaattcagaagttctgttta |
211 |
Q |
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| T |
8381712 |
ctatgctttctccacttttctccctcgtgaattataagaccactaaatagaaatttgaaaatctcatattttggcttttgtaattcagaagttctgttta |
8381811 |
T |
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| Q |
212 |
agacatctttt |
222 |
Q |
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||||||||||| |
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| T |
8381812 |
agacatctttt |
8381822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 68 - 137
Target Start/End: Complemental strand, 30383824 - 30383755
Alignment:
| Q |
68 |
taaccttcaatttttctaactggaaagcagcgttcattaaccttctatgctttctccacttttctccctc |
137 |
Q |
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| T |
30383824 |
taaccttcaacttttctaaatggaaagcagggttgattagctttctatgcttgctccacttttctccctc |
30383755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 135
Target Start/End: Complemental strand, 30393975 - 30393908
Alignment:
| Q |
68 |
taaccttcaatttttctaactggaaagcagcgttcattaaccttctatgctttctccacttttctccc |
135 |
Q |
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| T |
30393975 |
taaccttcaattgttctaaatggaaagcagggttgattagccttctatgcttgctccatttttctccc |
30393908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 153
Target Start/End: Complemental strand, 30482225 - 30482135
Alignment:
| Q |
63 |
gaaaataaccttcaatttttctaactggaaagcagcgttcattaaccttctatgctttctccacttttctccctcgtgaattataagacca |
153 |
Q |
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| T |
30482225 |
gaaactaaccttcaatttttctaaatggaatgcaggatttattatctttctatgcttgctccacttttcaccctcatgggttataagacca |
30482135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 134
Target Start/End: Complemental strand, 23767356 - 23767286
Alignment:
| Q |
64 |
aaaataaccttcaatttttctaactggaaagcagcgttcattaaccttctatgctttctccacttttctcc |
134 |
Q |
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| T |
23767356 |
aaaataaccttcaatttttccatgtgaaaagcagggttgattatccttctatgcttggtccacttttctcc |
23767286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 153
Target Start/End: Complemental strand, 30423933 - 30423851
Alignment:
| Q |
71 |
ccttcaatttttctaactggaaagcagcgttcattaaccttctatgctttctccacttttctccctcgtgaattataagacca |
153 |
Q |
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| T |
30423933 |
ccttcaatttttctaaatggaatgcagggttgataatctttctgtgcttgctccactgttctccctcatgacttataagacca |
30423851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 134
Target Start/End: Original strand, 23784766 - 23784841
Alignment:
| Q |
59 |
aaaagaaaataaccttcaatttttctaactggaaagcagcgttcattaaccttctatgctttctccacttttctcc |
134 |
Q |
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||||||| ||||||||||||||||| | || || |||| ||| |||| ||||||||||| |||||||||||||| |
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| T |
23784766 |
aaaagaagataaccttcaatttttccatgtgaaacgcagggttgattattcttctatgcttgctccacttttctcc |
23784841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 66 - 175
Target Start/End: Original strand, 41628723 - 41628832
Alignment:
| Q |
66 |
aataaccttcaatttttctaactggaaagcagcgttcattaaccttctatgctttctccacttttctccctcgtgaattataagaccactaaatagaaat |
165 |
Q |
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||||||||||||||||||| | |||||||| | ||| |||| |||||||||||| ||||||||||||||||| || || ||||||||||| ||| || |
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| T |
41628723 |
aataaccttcaatttttctgaatggaaagcggggttgattagccttctatgcttgctccacttttctccctcaagacttgcaagaccactaactagtaac |
41628822 |
T |
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| Q |
166 |
ttgaaaatct |
175 |
Q |
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|||||||||| |
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| T |
41628823 |
ttgaaaatct |
41628832 |
T |
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