View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10344_1 (Length: 1090)
Name: NF10344_1
Description: NF10344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10344_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 672; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 672; E-Value: 0
Query Start/End: Original strand, 271 - 994
Target Start/End: Complemental strand, 1246380 - 1245659
Alignment:
| Q |
271 |
tgtttaataacctcacttgaagaatagtatctttacattaaattatcaaattatctttatcttgattttcttaatgtgaaatatatttttaatttgataa |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1246380 |
tgtttaataacctcacttgaagaatagtatctttacattaaattatcaaattatctttctcttgattttcttaatgtgaaatatatttttaatttgataa |
1246281 |
T |
|
| Q |
371 |
tttcttgttctgccagtagaaattgcttcaagcaatgtctctccttatctttatcaggaatttaggagtaaagcatcaagaaattatatgaatgatagat |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1246280 |
tttcttgttctgccagtagaaattgcttcaagcaatgtctctccttatctttatcaggaatttaggagtaaagcatcaagaaattatatgaatgatagat |
1246181 |
T |
|
| Q |
471 |
tatatagaataagacaaaaaagaatacaatttttccaaatgcttattatcatcataatgcttgttgcaaaaagtttatcagactacaaaacatgaaacct |
570 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1246180 |
tatatagaataagacaaaaaagaatacaatttttccaaatgcttattatcatcataatgcttgttgcaaaaagtttatcaaactacaaaacatgaaacct |
1246081 |
T |
|
| Q |
571 |
caaaattcagcaacaataatctactgcaacattcaacctgaatttgttaccaaactactgatatttcaaaattcatttccctcatactctatgatgaaga |
670 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1246080 |
caaaattcagcaacaataatctactgcaacattcaacctgaatttgttaccaaactactgatatttcaaaattcatttccctcatactctatgatgaaga |
1245981 |
T |
|
| Q |
671 |
caaaaatctgatagcatagaactctactctcacataaatcaacatgctactctcacaaaattagaacaaatttttcacaaaggagtctcacctggaaggt |
770 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1245980 |
caaaaatctgatagcatagaactctactctcacataaatcaacatgctactctcacaaaattagaacaaa--tttcacaaaggagtctcacctggaaggt |
1245883 |
T |
|
| Q |
771 |
aagaaggaagtcctctctcaacctgcaagcnnnnnnncctaggaaaaaggctactaatactaggcattagaattttcttccctttatccaacttcctcgc |
870 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1245882 |
aagaaggaagtcctctctcaacctgcaagctttttttcctaggaaaaaggctactaatactaggcattagaattttcttccctttatccaacttcctcgc |
1245783 |
T |
|
| Q |
871 |
ctccatgttttgtggaagtgaatgctgcttttgaatcttgtaaagccgaggagataaacgtgatgaagacgatgatgatgacggcattggtgtttcagcc |
970 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
1245782 |
ctccatgttttgtggaagtgaatgctgcttttgaatcttgtaaagccgaggagataaacgtgatgaagacgataaagatgacggcattggtgtttcagcc |
1245683 |
T |
|
| Q |
971 |
aatactcgagccacaggttctgct |
994 |
Q |
| |
|
|||||||||||||||| ||||||| |
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|
| T |
1245682 |
aatactcgagccacagtttctgct |
1245659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 12 - 174
Target Start/End: Complemental strand, 1247566 - 1247404
Alignment:
| Q |
12 |
cttcttggatcggtgaggtaactatcgagtgtgtcagagacggtgattggtgaggaatgagaggaagatgatggcattgtgaatgttaagggttcttctc |
111 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1247566 |
cttcttgggtcagtgaggtaactatcgagtgtgtcagagacggtgattggtgaggaatgagaggaagatgatgggattgtgaatgttaagggttcttctc |
1247467 |
T |
|
| Q |
112 |
tgtctctgttgttgttacccatcattgtttgtttgagagtgaaaatggtgaagaagaatgaaa |
174 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
1247466 |
tttctctgttgttgttacccatcattgtttgtttgagagtgaaaatggcgaagaagaatgaaa |
1247404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 644; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 271 - 994
Target Start/End: Complemental strand, 42011041 - 42010321
Alignment:
| Q |
271 |
tgtttaataacctcacttgaagaatagtatctttacattaaattatcaaattatctttatcttgattttcttaatgtgaaatatatttttaatttgataa |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42011041 |
tgtttaataacctcacttgaagaatagtatctttacattaaattatcaaattatctttctcttgattttcttaatgtgaaatatatttttaatttgataa |
42010942 |
T |
|
| Q |
371 |
tttcttgttctgccagtagaaattgcttcaagcaatgtctctccttatctttatcaggaatttaggagtaaagcatcaagaaattatatgaatgatagat |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42010941 |
tttcttgttctgccagtagaaattgcttcaagcaatgtctctccttatctttatcaggaatttaggagtaaagcatcaagaaattatatgaatgatagat |
42010842 |
T |
|
| Q |
471 |
tatatagaataagacaaaaaagaatacaatttttccaaatgcttattatcatcataatgcttgttgcaaaaagtttatcagactacaaaacatgaaacct |
570 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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|
| T |
42010841 |
tatatagaataagacaaaaaagaatacaa-ttttccaaatgcttattatcatcataatgcttgttgcaaaaagtttatcaaactataaaacatgaaacct |
42010743 |
T |
|
| Q |
571 |
caaaattcagcaacaataatctactgcaacattcaacctgaatttgttaccaaactactgatatttcaaaattcatttccctcatactctatgatgaaga |
670 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42010742 |
caaaattcagcaacaataatctactgcaacattcaatctgaatttgttaccaaactactgatatttcaaaaatcatttccctcatactctatgatgaaga |
42010643 |
T |
|
| Q |
671 |
caaaaatctgatagcatagaactctactctcacataaatcaacatgctactctcacaaaattagaacaaatttttcacaaaggagtctcacctggaaggt |
770 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42010642 |
caaaaatctgatagcataaaactctactctcacataaatcaacatgctactctcacaaaattagaacaaa--tttcacaaaggagtctcacctggaaggt |
42010545 |
T |
|
| Q |
771 |
aagaaggaagtcctctctcaacctgcaagcnnnnnnncctaggaaaaaggctactaatactaggcattagaattttcttccctttatccaacttcctcgc |
870 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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|
| T |
42010544 |
aagaaggaagtcctctctcaacctgcaagctttttttcctaggaaaaaagctactaatactaggcaatagaattttcttccctttttccaacttcctcgc |
42010445 |
T |
|
| Q |
871 |
ctccatgttttgtggaagtgaatgctgcttttgaatcttgtaaagccgaggagataaacgtgatgaagacgatgatgatgacggcattggtgtttcagcc |
970 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42010444 |
ctccatgttttgtggaagtgaatgctgcttttgaatcttgtaaagccgaggagataaacgtgatgaagacgatgatgatgacggcattggtgtttcagcc |
42010345 |
T |
|
| Q |
971 |
aatactcgagccacaggttctgct |
994 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
42010344 |
aatactcgagccacagtttctgct |
42010321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 4e-72
Query Start/End: Original strand, 12 - 174
Target Start/End: Complemental strand, 42014338 - 42014176
Alignment:
| Q |
12 |
cttcttggatcggtgaggtaactatcgagtgtgtcagagacggtgattggtgaggaatgagaggaagatgatggcattgtgaatgttaagggttcttctc |
111 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| | |||||||| |
|
|
| T |
42014338 |
cttcttgggtcggtgaggtaactatcgagtgtgtcagagacggtgatcggtgaggaatgagaggaagatgatgggattgtgaatgttaaagattcttctc |
42014239 |
T |
|
| Q |
112 |
tgtctctgttgttgttacccatcattgtttgtttgagagtgaaaatggtgaagaagaatgaaa |
174 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42014238 |
tttctctgttgttgttacccatcattgtttgtttgagagtgaaaatggtgaagaagaatgaaa |
42014176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 991 - 1090
Target Start/End: Complemental strand, 8682843 - 8682744
Alignment:
| Q |
991 |
tgctcgttcactggctgtggtgctggcttcacttcctctacttttgtgccaccacctgcatttttaccaccgccttcattggccgttttgttgtcatcac |
1090 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8682843 |
tgctctttcactggctgtggtgctggcttcacttcctctacttttgagccaccacctgcatttttaccaccgccttcattggccgttttgttgtcatcac |
8682744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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