View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10344_2 (Length: 871)
Name: NF10344_2
Description: NF10344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10344_2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 713; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 713; E-Value: 0
Query Start/End: Original strand, 101 - 871
Target Start/End: Complemental strand, 8683688 - 8682918
Alignment:
| Q |
101 |
gaacctgtgaatgaatcaatgaacatataagataacaaatcaaagatttacataaaaatcgaaacaaaagacgttacagatactaacctgacagcatttc |
200 |
Q |
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| T |
8683688 |
gaacctgtgaatgaatcaatgaacatataagataacaaatcaaagatttacataaaaatcgaaacaaaagaagttacagatactaacctgacagcatttc |
8683589 |
T |
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| Q |
201 |
tccnnnnnnnnnnnnntccaatagccatttggaaacttgaacttatgatcaaagcaccttgaatccctctcattgtcatagtaaacctctaggaaattca |
300 |
Q |
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| T |
8683588 |
tccaaaaaccaaaaaatccaatagccatttggaaacttgaacttatgatcaaagcaccttgaatccctctcattgtcatagtaaacctctaggaaattca |
8683489 |
T |
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| Q |
301 |
aacaaacatgtagacaaagtcagcaaaatgaaaacgctaaagagtgaaacattttccatttataacatgtacgaaaaaa-cagaagcataaaaaatagtt |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8683488 |
aacaaacatgtagacaaagtcagcaaaatgaaaacgctaaagagtgaaacattttccatttataacatgtacgaaaaaaacagaagcataaaaaatagtt |
8683389 |
T |
|
| Q |
400 |
tgatttacctcataaggatctgtatatgcattatatctgctagcctgaacaatagaaattataggtattatgtaactgtatgaaccaacaattacaattg |
499 |
Q |
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| T |
8683388 |
tgatttacctcataaggatctgtatatgcattatatctgctagcctgaacaatagaaattataggtattatgtaactgtatgaaccaacaattacaattg |
8683289 |
T |
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| Q |
500 |
gcaatcgagttccgaacaaagattgaaaaaatgtgcttagtccagacacaaatagaagtgtctgtatcaccctagtcttctcagcctacattgaatcaaa |
599 |
Q |
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| T |
8683288 |
gcaatcgagttccgaacaaagattgaaaaaatgtgcttagtccagacacaaatagaagtgtctgtatcaccctagtcttctcagcctacattgaatcaaa |
8683189 |
T |
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| Q |
600 |
ccattttgttcattaatactattataaaagttgcttaaaattaaaagcaaatacaaattgatcagaaatatttctcacatctcctccacccatttgagga |
699 |
Q |
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| T |
8683188 |
ccattttgttcattaatactattataaaagttgcttaaaattaaaagcaaatacaaattgatcagaaatatttctcacatctcctccacccatttgagga |
8683089 |
T |
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| Q |
700 |
acaattatagttggaatcagaactgtaatgccaagagttagaaggtaatgctgaaatcccaatatcactgcttgacctgcattatgatcaaaagattgat |
799 |
Q |
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| T |
8683088 |
acaattatagttggaatcagaactgtaatgccaagagttagaaggtaatgctgaaatcccaatatcactgcttgacctgcattatgatc-aaagattgat |
8682990 |
T |
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| Q |
800 |
tcaaattgtgaaccagtacactcttaagcaaaaattagttaatcaatttttcatcaacatgtcataattttt |
871 |
Q |
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| T |
8682989 |
tcaaattgtgaaccagtacactcttaagcaaaaattagttaatcaatttttcatcaacatgtcataattttt |
8682918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 8682744 - 8682843
Alignment:
| Q |
1 |
gtgatgacaacaaaacggccaatgaaggcggtggtaaaaatgcaggtggtggcacaaaagtagaggaagtgaagccagcaccacagccagtgaacgagca |
100 |
Q |
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| T |
8682744 |
gtgatgacaacaaaacggccaatgaaggcggtggtaaaaatgcaggtggtggctcaaaagtagaggaagtgaagccagcaccacagccagtgaaagagca |
8682843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 406 - 551
Target Start/End: Complemental strand, 47579685 - 47579540
Alignment:
| Q |
406 |
acctcataaggatctgtatatgcattatatctgctagcctgaacaatagaaattataggtattatgtaactgtatgaaccaacaattacaattggcaatc |
505 |
Q |
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| T |
47579685 |
acctcataaggatctgtatatgaactgtatctgctagcttgaacagctgacataattggtatcatgtaagtgtatgaaccaacaactacacttggcaatc |
47579586 |
T |
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| Q |
506 |
gagttccgaacaaagattgaaaaaatgtgcttagtccagacacaaa |
551 |
Q |
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| T |
47579585 |
gggttccgaataaagattgaagaaacgtgctcagtccagaaacaaa |
47579540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 684 - 752
Target Start/End: Complemental strand, 47579393 - 47579325
Alignment:
| Q |
684 |
tccacccatttgaggaacaattatagttggaatcagaactgtaatgccaagagttagaaggtaatgctg |
752 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||| ||||||||||| | || ||||||||| |
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| T |
47579393 |
tccacccatttgaggaacaactatagttggaatcaaaactgtcatgccaagagtcaaaatgtaatgctg |
47579325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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