View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10344_4 (Length: 542)

Name: NF10344_4
Description: NF10344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10344_4
NF10344_4
[»] chr3 (10 HSPs)
chr3 (32-175)||(19576481-19576623)
chr3 (276-406)||(19576251-19576381)
chr3 (344-410)||(16229981-16230046)
chr3 (346-410)||(20023579-20023643)
chr3 (345-406)||(27413925-27413986)
chr3 (344-410)||(8889191-8889256)
chr3 (345-408)||(19167407-19167469)
chr3 (359-410)||(19909999-19910050)
chr3 (40-118)||(7147705-7147783)
chr3 (345-409)||(8169881-8169944)
[»] chr5 (5 HSPs)
chr5 (414-513)||(8682744-8682843)
chr5 (303-410)||(16523829-16523937)
chr5 (32-158)||(20745033-20745158)
chr5 (316-410)||(20549743-20549838)
chr5 (347-408)||(20564121-20564182)
[»] chr1 (7 HSPs)
chr1 (34-158)||(18830183-18830306)
chr1 (302-410)||(16916972-16917081)
chr1 (32-121)||(15808280-15808369)
chr1 (344-410)||(23179792-23179858)
chr1 (345-408)||(14781894-14781956)
chr1 (344-410)||(24053974-24054038)
chr1 (344-408)||(727463-727525)
[»] chr2 (7 HSPs)
chr2 (32-158)||(25534948-25535073)
chr2 (281-410)||(26667248-26667378)
chr2 (303-407)||(17197821-17197926)
chr2 (344-410)||(25530442-25530507)
chr2 (344-408)||(24090967-24091030)
chr2 (344-410)||(25535269-25535334)
chr2 (302-353)||(25920247-25920299)
[»] chr7 (6 HSPs)
chr7 (305-408)||(16059062-16059165)
chr7 (314-406)||(22067268-22067361)
chr7 (334-406)||(17191244-17191316)
chr7 (344-408)||(13277498-13277561)
chr7 (302-374)||(11570105-11570178)
chr7 (344-408)||(13289448-13289512)
[»] chr8 (3 HSPs)
chr8 (31-158)||(16403599-16403725)
chr8 (41-121)||(19786477-19786557)
chr8 (338-408)||(16403900-16403970)
[»] chr4 (4 HSPs)
chr4 (303-408)||(17026373-17026479)
chr4 (344-408)||(25097829-25097893)
chr4 (350-408)||(25094568-25094626)
chr4 (344-401)||(12406739-12406796)
[»] scaffold0034 (1 HSPs)
scaffold0034 (344-410)||(76412-76478)
[»] scaffold0671 (1 HSPs)
scaffold0671 (338-408)||(430-500)
[»] scaffold0386 (2 HSPs)
scaffold0386 (344-406)||(6136-6198)
scaffold0386 (344-410)||(6742-6808)
[»] chr6 (5 HSPs)
chr6 (344-404)||(22413094-22413153)
chr6 (344-410)||(23009433-23009498)
chr6 (344-410)||(23778866-23778931)
chr6 (345-410)||(24657494-24657558)
chr6 (372-408)||(17827133-17827168)


Alignment Details
Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 32 - 175
Target Start/End: Complemental strand, 19576623 - 19576481
Alignment:
Q  32 tagatttcgttgtaatgattgaactggtttgttgaagaatgatccattattcgttccctaaaacaatcacaaacaaaaatacccaagtagtagtattcta 131  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  19576623 tagatttcattgtaatgattgaactagtttgttgaagaatgatccattattcgttccctgaaacaatcacaaacaaaaatacctaagtagtagtattcta 19576524  T
Q  132 ttaagtaaatataagtaataataattaaaatacttactataccc 175  Q
      |||||||| |||||||||||||||||||||||||||||||||    
T  19576523 -gaagtaaatgtaagtaataataattaaaatacttactataccc 19576481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 276 - 406
Target Start/End: Complemental strand, 19576381 - 19576251
Alignment:
Q  276 caatccccgacaacggcgtcaaaaatttgatgcacactttcgtgcttaattcgattgtgtagttgcgcaatggcaagtgcaccagtcgttttcctcaagt 375  Q
    |||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||    
T  19576381 caatacccgacaacggcgccaaaaatttgatgcacactttcgtgtttaattcgattgtgtagttgcgcaatgacaagtgtaccagtcgttttcatcaagt 19576282  T
Q  376 aataaagttagtaaatagagtatcgtatcca 406  Q
    |||||||||||| |  |||||||||||||||    
T  19576281 aataaagttagtgaggagagtatcgtatcca 19576251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 344 - 410
Target Start/End: Complemental strand, 16230046 - 16229981
Alignment:
Q  344 aatggcaagtgcaccagtcgttttcctcaagtaataaagttagtaaatagagtatcgtatccacagg 410  Q
    ||||||||||| || |||||||||| ||||||||||||| |||||| ||||||||||||||||||||    
T  16230046 aatggcaagtgtactagtcgttttcatcaagtaataaag-tagtaagtagagtatcgtatccacagg 16229981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 346 - 410
Target Start/End: Complemental strand, 20023643 - 20023579
Alignment:
Q  346 tggcaagtgcaccagtcgttttcctcaagtaataaagttagtaaatagagtatcgtatccacagg 410  Q
    ||||||||| ||||||||||||| |||||||||||||||||||| || ||||| ||||| |||||    
T  20023643 tggcaagtgtaccagtcgttttcatcaagtaataaagttagtaagtaaagtattgtatcaacagg 20023579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 27413986 - 27413925
Alignment:
Q  345 atggcaagtgcaccagtcgttttcctcaagtaataaagttagtaaatagagtatcgtatcca 406  Q
    |||||||||| |||| |||||||| ||| |||||||||||||||| ||||||||| ||||||    
T  27413986 atggcaagtgtaccaatcgttttcatcatgtaataaagttagtaagtagagtatcatatcca 27413925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 410
Target Start/End: Complemental strand, 8889256 - 8889191
Alignment:
Q  344 aatggcaagtgcaccagtcgttttcctcaagtaataaagttagtaaatagagtatcgtatccacagg 410  Q
    ||||||||||| || |||||||||| |||||||||||||| | ||| |||||||| |||||||||||    
T  8889256 aatggcaagtgtacaagtcgttttcatcaagtaataaagtga-taagtagagtattgtatccacagg 8889191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 408
Target Start/End: Original strand, 19167407 - 19167469
Alignment:
Q  345 atggcaagtgcaccagtcgttttcctcaagtaataaagttagtaaatagagtatcgtatccaca 408  Q
    |||||||||| || |||||||  | |||||||| |||||| |||||||||||||||||||||||    
T  19167407 atggcaagtgtactagtcgttcacatcaagtaagaaagtt-gtaaatagagtatcgtatccaca 19167469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 410
Target Start/End: Complemental strand, 19910050 - 19909999
Alignment:
Q  359 agtcgttttcctcaagtaataaagttagtaaatagagtatcgtatccacagg 410  Q
    |||||||| | ||||||||| |||||||| | ||||||||||||||||||||    
T  19910050 agtcgtttacatcaagtaatgaagttagtcagtagagtatcgtatccacagg 19909999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 40 - 118
Target Start/End: Original strand, 7147705 - 7147783
Alignment:
Q  40 gttgtaatgattgaactggtttgttgaagaatgatccattattcgttccctaaaacaatcacaaacaaaaatacccaag 118  Q
    |||||||||||||||||||| ||||| | ||| |||||| ||| ||| ||| ||| || || ||||||| |||||||||    
T  7147705 gttgtaatgattgaactggtctgttgtaaaataatccatgatttgtttcctgaaataaccataaacaaatatacccaag 7147783  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 409
Target Start/End: Original strand, 8169881 - 8169944
Alignment:
Q  345 atggcaagtgcaccagtcgttttcctcaagtaataaagttagtaaatagagtatcgtatccacag 409  Q
    |||||||||| ||||||||||  | ||||||||||||| |||||| || | ||||||||||||||    
T  8169881 atggcaagtgtaccagtcgttcacatcaagtaataaag-tagtaagtaaaatatcgtatccacag 8169944  T

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Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 414 - 513
Target Start/End: Complemental strand, 8682843 - 8682744
Alignment:
Q  414 tgctcgttcactggctgtggtgctggcttcacttcctctacttttgtgccaccacctgcatttttaccaccgccttcattggccgttttgttgtcatcac 513  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8682843 tgctctttcactggctgtggtgctggcttcacttcctctacttttgagccaccacctgcatttttaccaccgccttcattggccgttttgttgtcatcac 8682744  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 303 - 410
Target Start/End: Complemental strand, 16523937 - 16523829
Alignment:
Q  303 tgatgcacactttcgtgcttaattcgatt-gtgtagttgcgcaatggcaagtgcaccagtcgttttcctcaagtaataaagttagtaaatagagtatcgt 401  Q
    ||||||||||||||||| |||||| |||| | |||||||| ||||| |||||| ||||||||||||| ||||||||||||||| |||| |||||||| ||    
T  16523937 tgatgcacactttcgtgtttaatttgattagcgtagttgcacaatgacaagtgtaccagtcgttttcatcaagtaataaagttcgtaagtagagtattgt 16523838  T
Q  402 atccacagg 410  Q
    |||||||||    
T  16523837 atccacagg 16523829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 32 - 158
Target Start/End: Complemental strand, 20745158 - 20745033
Alignment:
Q  32 tagatttcgttgtaatgattgaactggtttgttgaagaatgatccattattcgttccctaaaacaatcacaaacaaaaatacccaagtagtagtattcta 131  Q
    ||||||||||| |||||||||||||||| |||||||||||| |||||||||| |||||| ||| || ||||||||||||||| ||||||| | | |||||    
T  20745158 tagatttcgttctaatgattgaactggtatgttgaagaatggtccattattctttccctgaaataaccacaaacaaaaatactcaagtagaactgttcta 20745059  T
Q  132 ttaagtaaatataagtaataataatta 158  Q
      |||||| | ||| ||||||||||||    
T  20745058 -gaagtaactgtaaataataataatta 20745033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 316 - 410
Target Start/End: Complemental strand, 20549838 - 20549743
Alignment:
Q  316 cgtgcttaattcgatt-gtgtagttgcgcaatggcaagtgcaccagtcgttttcctcaagtaataaagttagtaaatagagtatcgtatccacagg 410  Q
    |||| ||||||||||| | ||||||||||||||| ||||| ||| ||||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  20549838 cgtgtttaattcgattagcgtagttgcgcaatggtaagtgtacccgtcgttttcatcaagtaataaaattagtaagtagagtatcgtatccacagg 20549743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 408
Target Start/End: Complemental strand, 20564182 - 20564121
Alignment:
Q  347 ggcaagtgcaccagtcgttttcctcaagtaataaagttagtaaatagagtatcgtatccaca 408  Q
    |||||||| || || || |||| |||||||||||||||||||| ||||||||||||||||||    
T  20564182 ggcaagtgtacgagacggtttcatcaagtaataaagttagtaagtagagtatcgtatccaca 20564121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 34 - 158
Target Start/End: Original strand, 18830183 - 18830306
Alignment:
Q  34 gatttcgttgtaatgattgaactggtttgttgaagaatgatccattattcgttccctaaaacaatcacaaacaaaaatacccaagtagtagtattctatt 133  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |  ||||||      
T  18830183 gatttcgttgtaatgattgaactggttcgttgaagaattatccattattcgttccctgaaacaatcacaaacaaaaatacccaagtagcacaattcta-g 18830281  T
Q  134 aagtaaatataagtaataataatta 158  Q
    |||||| | ||| ||||||||||||    
T  18830282 aagtaactgtaaataataataatta 18830306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 302 - 410
Target Start/End: Complemental strand, 16917081 - 16916972
Alignment:
Q  302 ttgatgcacactttcgtgcttaattcgatt-gtgtagttgcgcaatggcaagtgcaccagtcgttttcctcaagtaataaagttagtaaatagagtatcg 400  Q
    |||||||||| ||| ||| ||||||||||| | ||||||||| ||||| ||||| ||||||| ||||  |||||||||||||||||||| ||||||||||    
T  16917081 ttgatgcacatttttgtgtttaattcgattagcgtagttgcgaaatggtaagtgtaccagtcatttttatcaagtaataaagttagtaagtagagtatcg 16916982  T
Q  401 tatccacagg 410  Q
    ||||||||||    
T  16916981 tatccacagg 16916972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 32 - 121
Target Start/End: Complemental strand, 15808369 - 15808280
Alignment:
Q  32 tagatttcgttgtaatgattgaactggtttgttgaagaatgatccattattcgttccctaaaacaatcacaaacaaaaatacccaagtag 121  Q
    |||||||||||| ||||||||| ||| ||||||||| |||||| ||||||| ||||||| ||||||||| | ||||||||||||||||||    
T  15808369 tagatttcgttgaaatgattgacctgatttgttgaaaaatgattcattatttgttccctcaaacaatcatagacaaaaatacccaagtag 15808280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 344 - 410
Target Start/End: Original strand, 23179792 - 23179858
Alignment:
Q  344 aatggcaagtgcaccagtcgttttcctcaagtaataaagttagtaaatagagtatcgtatccacagg 410  Q
    |||||||||||  |||||| ||||| |||||||||||||||||||||||||||||| ||||||||||    
T  23179792 aatggcaagtgtgccagtcattttcatcaagtaataaagttagtaaatagagtatcatatccacagg 23179858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 345 - 408
Target Start/End: Complemental strand, 14781956 - 14781894
Alignment:
Q  345 atggcaagtgcaccagtcgttttcctcaagtaataaagttagtaaatagagtatcgtatccaca 408  Q
    |||||||||| ||||||||||||| ||||||||||||| |||||| ||||||||||||||||||    
T  14781956 atggcaagtgtaccagtcgttttcatcaagtaataaag-tagtaagtagagtatcgtatccaca 14781894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 410
Target Start/End: Original strand, 24053974 - 24054038
Alignment:
Q  344 aatggcaagtgcaccagtcgttttcctcaagtaataaagttagtaaatagagtatcgtatccacagg 410  Q
    ||||||||||| ||||||||||||| ||||||||||||| || ||| ||||||||| ||||||||||    
T  24053974 aatggcaagtgtaccagtcgttttcatcaagtaataaag-taataagtagagtatc-tatccacagg 24054038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 344 - 408
Target Start/End: Original strand, 727463 - 727525
Alignment:
Q  344 aatggcaagtgcaccagtcgttttcctcaagtaataaagttagtaaatagagtatcgtatccaca 408  Q
    ||||||||||| |||||||| |||| |||||||||||||| | ||| |||||||||| |||||||    
T  727463 aatggcaagtgtaccagtcg-tttcatcaagtaataaagtga-taagtagagtatcgcatccaca 727525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 32 - 158
Target Start/End: Original strand, 25534948 - 25535073
Alignment:
Q  32 tagatttcgttgtaatgattgaactggtttgttgaagaatgatccattattcgttccctaaaacaatcacaaacaaaaatacccaagtagtagtattcta 131  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||  |||||||||||||||||||||| ||||||| | || ||||    
T  25534948 tagatttcgttgtaatgattgaactggtttgttgaagaattttccattattcgtaccccgaaacaatcacaaacaaaaatactcaagtagcactaatcta 25535047  T
Q  132 ttaagtaaatataagtaataataatta 158  Q
     ||||||| ||||| ||||||||||||    
T  25535048 -taagtaactataaataataataatta 25535073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 281 - 410
Target Start/End: Original strand, 26667248 - 26667378
Alignment:
Q  281 cccgacaacggcgtcaaaaatttgatgcacactttcgtgcttaattcgatt-gtgtagttgcgcaatggcaagtgcaccagtcgttttcctcaagtaata 379  Q
    |||| |||||||  |||||| |||||||| |||||||||  |||||||| | | ||| ||||||||||||||||| ||||||| ||||| ||||||||||    
T  26667248 cccggcaacggcaccaaaaacttgatgcatactttcgtgtctaattcgaatagcgtaattgcgcaatggcaagtgtaccagtcattttcatcaagtaata 26667347  T
Q  380 aagttagtaaatagagtatcgtatccacagg 410  Q
    |||||||||| ||||||||||||||||||||    
T  26667348 aagttagtaagtagagtatcgtatccacagg 26667378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 303 - 407
Target Start/End: Original strand, 17197821 - 17197926
Alignment:
Q  303 tgatgcacactttcgtgcttaattcgatt-gtgtagttgcgcaatggcaagtgcaccagtcgttttcctcaagtaataaagttagtaaatagagtatcgt 401  Q
    ||||||||||||||||| ||||||||||| | ||||||| ||||||||||||| |||||| |||||| |||||| ||||||||||||| |||||||| ||    
T  17197821 tgatgcacactttcgtgtttaattcgattagcgtagttgtgcaatggcaagtgtaccagttgttttcatcaagttataaagttagtaagtagagtattgt 17197920  T
Q  402 atccac 407  Q
    ||||||    
T  17197921 atccac 17197926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 344 - 410
Target Start/End: Original strand, 25530442 - 25530507
Alignment:
Q  344 aatggcaagtgcaccagtcgttttcctcaagtaataaagttagtaaatagagtatcgtatccacagg 410  Q
    ||||||||||| |||| |||||||| |||||||||||||| | ||| ||||||||||||||||||||    
T  25530442 aatggcaagtgtaccaatcgttttcatcaagtaataaagtga-taagtagagtatcgtatccacagg 25530507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 408
Target Start/End: Complemental strand, 24091030 - 24090967
Alignment:
Q  344 aatggcaagtgcaccagtcgttttcctcaagtaataaagttagtaaatagagtatcgtatccaca 408  Q
    ||||| ||||| ||||||||||||| |||||||||||||| | |||||||| |||||||||||||    
T  24091030 aatggaaagtgtaccagtcgttttcatcaagtaataaagtga-taaatagaatatcgtatccaca 24090967  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 410
Target Start/End: Original strand, 25535269 - 25535334
Alignment:
Q  344 aatggcaagtgcaccagtcgttttcctcaagtaataaagttagtaaatagagtatcgtatccacagg 410  Q
    |||| |||||| || ||| |||||| |||||||||||||| | ||| ||||||||||||||||||||    
T  25535269 aatgacaagtgtactagttgttttcatcaagtaataaagtga-taagtagagtatcgtatccacagg 25535334  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 353
Target Start/End: Original strand, 25920247 - 25920299
Alignment:
Q  302 ttgatgcacactttcgtgcttaattcgatt-gtgtagttgcgcaatggcaagt 353  Q
    |||||||||||||||||| ||||||||||| | |||||| || ||||||||||    
T  25920247 ttgatgcacactttcgtgtttaattcgattagcgtagttacgaaatggcaagt 25920299  T

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Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 305 - 408
Target Start/End: Complemental strand, 16059165 - 16059062
Alignment:
Q  305 atgcacactttcgtgcttaattcgatt-gtgtagttgcgcaatggcaagtgcaccagtcgttttcctcaagtaataaagttagtaaatagagtatcgtat 403  Q
    ||||||||||||||| |||||| |||| ||||||||||||||||||||||| |||  |||||||| |||||||||||||||||||| |||||||||||||    
T  16059165 atgcacactttcgtg-ttaattggattagtgtagttgcgcaatggcaagtgtaccgatcgttttcatcaagtaataaagttagtaagtagagtatcgtat 16059067  T
Q  404 ccaca 408  Q
    |||||    
T  16059066 ccaca 16059062  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 314 - 406
Target Start/End: Complemental strand, 22067361 - 22067268
Alignment:
Q  314 ttcgtgcttaattcgatt-gtgtagttgcgcaatggcaagtgcaccagtcgttttcctcaagtaataaagttagtaaatagagtatcgtatcca 406  Q
    |||||| ||| ||||||| | ||||||||||||||||||||| ||||||||||||| | |||||||||||||||||| ||||||||| ||||||    
T  22067361 ttcgtgtttatttcgattagcgtagttgcgcaatggcaagtgtaccagtcgttttcataaagtaataaagttagtaagtagagtatcatatcca 22067268  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 334 - 406
Target Start/End: Complemental strand, 17191316 - 17191244
Alignment:
Q  334 gtagttgcgcaatggcaagtgcaccagtcgttttcctcaagtaataaagttagtaaatagagtatcgtatcca 406  Q
    |||||||||||||| |||||| ||||||||||||  |||||||||||||||||||| ||||||||||||||||    
T  17191316 gtagttgcgcaatgacaagtgtaccagtcgtttttatcaagtaataaagttagtaagtagagtatcgtatcca 17191244  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 344 - 408
Target Start/End: Original strand, 13277498 - 13277561
Alignment:
Q  344 aatggcaagtgcaccagtcgttttcctcaagtaataaagttagtaaatagagtatcgtatccaca 408  Q
    ||||||||||| ||||||||||||| |||||||||| ||| | ||||||||||||||||||||||    
T  13277498 aatggcaagtgtaccagtcgttttcatcaagtaatacagtga-taaatagagtatcgtatccaca 13277561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 302 - 374
Target Start/End: Original strand, 11570105 - 11570178
Alignment:
Q  302 ttgatgcacactttcgtgcttaattcgatt-gtgtagttgcgcaatggcaagtgcaccagtcgttttcctcaag 374  Q
    ||||||||||||||| || || |||||| | | ||||||||||||||||||||| ||||||||||||| |||||    
T  11570105 ttgatgcacactttcatgttttattcgaatagcgtagttgcgcaatggcaagtgtaccagtcgttttcatcaag 11570178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 408
Target Start/End: Complemental strand, 13289512 - 13289448
Alignment:
Q  344 aatggcaagtgcaccagtcgttttcctcaagtaataaagttagtaaatagagtatcgtatccaca 408  Q
    |||| |||||| ||||||||||||| |||||||||||||||||||| || | ||| |||||||||    
T  13289512 aatgacaagtgtaccagtcgttttcatcaagtaataaagttagtaagtataatattgtatccaca 13289448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 6e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 31 - 158
Target Start/End: Original strand, 16403599 - 16403725
Alignment:
Q  31 atagatttcgttgtaatgattgaactggtttgttgaagaatgatccattattcgttccctaaaacaatcacaaacaaaaatacccaagtagtagtattct 130  Q
    |||||||  |||||||||||||||||||||||   |||||  ||||||||||||||| || ||| |||||||||||||||||||||||||| | ||||||    
T  16403599 atagattatgttgtaatgattgaactggtttgcaaaagaactatccattattcgttctctgaaataatcacaaacaaaaatacccaagtagaactattct 16403698  T
Q  131 attaagtaaatataagtaataataatta 158  Q
    |  || ||||| ||| ||||||||||||    
T  16403699 a-gaaataaatgtaaataataataatta 16403725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 121
Target Start/End: Original strand, 19786477 - 19786557
Alignment:
Q  41 ttgtaatgattgaactggtttgttgaagaatgatccattattcgttccctaaaacaatcacaaacaaaaatacccaagtag 121  Q
    |||||||||||||||| || ||||| | ||| |||||| ||||||||||| |||||| || ||||||||||||||||||||    
T  19786477 ttgtaatgattgaactagtctgttgcaaaatcatccatgattcgttccctgaaacaaccataaacaaaaatacccaagtag 19786557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 338 - 408
Target Start/End: Original strand, 16403900 - 16403970
Alignment:
Q  338 ttgcgcaatggcaagtgcaccagtcgttttcctcaagtaataaagttagtaaatagagtatcgtatccaca 408  Q
    |||| |||||||||||| ||||||| ||||| | || ||||||||||||||  ||||||||||||||||||    
T  16403900 ttgcacaatggcaagtgtaccagtcattttcattaaataataaagttagtatgtagagtatcgtatccaca 16403970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 303 - 408
Target Start/End: Complemental strand, 17026479 - 17026373
Alignment:
Q  303 tgatgcacactttcgtgcttaattcgatt-gtgtagttgcgcaatggcaagtgcaccagtcgttttcctcaagtaataaagttagtaaatagagtatcgt 401  Q
    ||||| ||||||||||| ||||||||||| | ||| || | |||||||||||| ||||||||||||| ||||||| |||||||||||| |||||||||||    
T  17026479 tgatgtacactttcgtgtttaattcgattagcgtattttcacaatggcaagtgtaccagtcgttttcatcaagtattaaagttagtaagtagagtatcgt 17026380  T
Q  402 atccaca 408  Q
    || ||||    
T  17026379 attcaca 17026373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 344 - 408
Target Start/End: Original strand, 25097829 - 25097893
Alignment:
Q  344 aatggcaagtgcaccagtcgttttcctcaagtaataaagttagtaaatagagtatcgtatccaca 408  Q
    ||||||||||| |||||| |||||| |||||||||||||||||||| ||||||||||||||||||    
T  25097829 aatggcaagtgtaccagttgttttcatcaagtaataaagttagtaagtagagtatcgtatccaca 25097893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 350 - 408
Target Start/End: Original strand, 25094568 - 25094626
Alignment:
Q  350 aagtgcaccagtcgttttcctcaagtaataaagttagtaaatagagtatcgtatccaca 408  Q
    ||||| |||||| |||||| |||||||||||||||||||| ||||||||| ||||||||    
T  25094568 aagtgtaccagtagttttcatcaagtaataaagttagtaagtagagtatcatatccaca 25094626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 401
Target Start/End: Complemental strand, 12406796 - 12406739
Alignment:
Q  344 aatggcaagtgcaccagtcgttttcctcaagtaataaagttagtaaatagagtatcgt 401  Q
    ||||||||||| |||| |||||||| ||||| |||||||||||||| |||| ||||||    
T  12406796 aatggcaagtgaaccattcgttttcatcaagcaataaagttagtaagtagaatatcgt 12406739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 344 - 410
Target Start/End: Original strand, 76412 - 76478
Alignment:
Q  344 aatggcaagtgcaccagtcgttttcctcaagtaataaagttagtaaatagagtatcgtatccacagg 410  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||    
T  76412 aatggcaagtgtaccagtcgttttcatcaagtaataaagttagtaagtagagtatcatatccacagg 76478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0671 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0671
Description:

Target: scaffold0671; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 408
Target Start/End: Original strand, 430 - 500
Alignment:
Q  338 ttgcgcaatggcaagtgcaccagtcgttttcctcaagtaataaagttagtaaatagagtatcgtatccaca 408  Q
    |||| |||||||||||| ||||||||||||| | || ||||||||||||||  ||||||||||||||||||    
T  430 ttgcacaatggcaagtgtaccagtcgttttcataaaataataaagttagtatgtagagtatcgtatccaca 500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 406
Target Start/End: Complemental strand, 6198 - 6136
Alignment:
Q  344 aatggcaagtgcaccagtcgttttcctcaagtaataaagttagtaaatagagtatcgtatcca 406  Q
    ||||||||||| |||| |||||||| ||||||||||||||||| || || |||||| ||||||    
T  6198 aatggcaagtgaaccattcgttttcatcaagtaataaagttagcaagtatagtatcatatcca 6136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 410
Target Start/End: Complemental strand, 6808 - 6742
Alignment:
Q  344 aatggcaagtgcaccagtcgttttcctcaagtaataaagttagtaaatagagtatcgtatccacagg 410  Q
    ||||||||||| || | | |||||| |||||||| |||||||| || ||||||||| ||||||||||    
T  6808 aatggcaagtgaactatttgttttcatcaagtaaaaaagttagcaagtagagtatcatatccacagg 6742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 404
Target Start/End: Complemental strand, 22413153 - 22413094
Alignment:
Q  344 aatggcaagtgcaccagtcgttttcctcaagtaataaagttagtaaatagagtatcgtatc 404  Q
    ||||||||||  | ||||||||||| |||||||||||||||| ||| ||||||||||||||    
T  22413153 aatggcaagtatatcagtcgttttcatcaagtaataaagtta-taagtagagtatcgtatc 22413094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 410
Target Start/End: Complemental strand, 23009498 - 23009433
Alignment:
Q  344 aatggcaagtgcaccagtcgttttcctcaagtaataaagttagtaaatagagtatcgtatccacagg 410  Q
    ||||||||||| || |||||||||| ||||||| |||||| | ||| ||||| ||||||||||||||    
T  23009498 aatggcaagtggactagtcgttttcatcaagtattaaagtga-taagtagagcatcgtatccacagg 23009433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 410
Target Start/End: Original strand, 23778866 - 23778931
Alignment:
Q  344 aatggcaagtgcaccagtcgttttcctcaagtaataaagttagtaaatagagtatcgtatccacagg 410  Q
    ||||||||||| || |||||||||| ||||||| |||||| | ||| ||||| ||||||||||||||    
T  23778866 aatggcaagtggactagtcgttttcatcaagtattaaagtga-taagtagagcatcgtatccacagg 23778931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 410
Target Start/End: Complemental strand, 24657558 - 24657494
Alignment:
Q  345 atggcaagtgcaccagtcgttttcctcaagtaataaagttagtaaatagagtatcgtatccacagg 410  Q
    |||||||||| ||||||| ||||| |||||||||||| | | ||| | ||||||||||||||||||    
T  24657558 atggcaagtgtaccagtcattttcatcaagtaataaaatga-taagtcgagtatcgtatccacagg 24657494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 372 - 408
Target Start/End: Complemental strand, 17827168 - 17827133
Alignment:
Q  372 aagtaataaagttagtaaatagagtatcgtatccaca 408  Q
    |||||||||||||| ||||||||||||||||||||||    
T  17827168 aagtaataaagtta-taaatagagtatcgtatccaca 17827133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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