View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10344_5 (Length: 499)
Name: NF10344_5
Description: NF10344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10344_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 436; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 13 - 481
Target Start/End: Complemental strand, 40286065 - 40285598
Alignment:
| Q |
13 |
aaaatcatataagttgttttcatatgttatcctatatagcttatgaaaataacttatgaacatgttataatcagtagataaactcatattaaaaataatg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40286065 |
aaaatcatataagttgttttcatatgttatcctatatagcttatgaaaataacttatgaacatgttataatcagtagataaactcatattaaaaataatg |
40285966 |
T |
|
| Q |
113 |
aatatacttttggtggtggacatcatattagataaaacatgggttatataacgactttgaaactcttgatttgtcagcttgttctaggtaacacagtggt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40285965 |
aatatacttttggtggtggacatcatat-agataaaacatgggttatataacgactttgaaactcttgatttgtcagcttgttctaggtaacacagtggt |
40285867 |
T |
|
| Q |
213 |
tttaatacnnnnnnnatgaggtgaggaagaagtgaaaattttaatttgagtggttaaaacatacatgcaggtttctttcagaacttcaagttttggtgca |
312 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40285866 |
tttaatactttttttatgaggtgaggaagaagtgaaaattttaatttgagtggttaaaacatacatgcaggtttctttcagaacttcaagttttggtgca |
40285767 |
T |
|
| Q |
313 |
atttctgtgggatgtacagggagaagctttccttcgttgagatcttctcgtttccgcatttgtgcagtaagtttgaaattcattttgacttttttaaaaa |
412 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40285766 |
atttctgtgggatgtacaaggagaagctttccttcgttgagatcttctcgtttccgcatttgtgcagtaagtttgaaattcattttgacttttttaaaaa |
40285667 |
T |
|
| Q |
413 |
acttgcaaggaacaataataactttgaattttgttaaaagattcaggcacaacctgagacagtggagaa |
481 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40285666 |
acttgcaaggaacaataataactttgaattttgttaaaagattcaggcacaacctgagacagtggagaa |
40285598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 26284862 - 26284821
Alignment:
| Q |
23 |
aagttgttttcatatgttatcctatatagcttatgaaaataa |
64 |
Q |
| |
|
||||||||||| || |||||||| |||||||||||||||||| |
|
|
| T |
26284862 |
aagttgttttcgtaagttatcctgtatagcttatgaaaataa |
26284821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 31862493 - 31862537
Alignment:
| Q |
20 |
tataagttgttttcatatgttatcctatatagcttatgaaaataa |
64 |
Q |
| |
|
|||||| |||||||||| ||||||||| | ||||||||||||||| |
|
|
| T |
31862493 |
tataagatgttttcataagttatcctagagagcttatgaaaataa |
31862537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 5924054 - 5924099
Alignment:
| Q |
19 |
atataagttgttttcatatgttatcctatatagcttatgaaaataa |
64 |
Q |
| |
|
|||||||||||||||||| ||||||||| | |||||||| |||||| |
|
|
| T |
5924054 |
atataagttgttttcataagttatcctagagagcttatggaaataa |
5924099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 25479581 - 25479625
Alignment:
| Q |
20 |
tataagttgttttcatatgttatcctatatagcttatgaaaataa |
64 |
Q |
| |
|
||||||||||||||||| | ||||||| | ||||||||||||||| |
|
|
| T |
25479581 |
tataagttgttttcataagctatcctagagagcttatgaaaataa |
25479625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 237397 - 237441
Alignment:
| Q |
20 |
tataagttgttttcatatgttatcctatatagcttatgaaaataa |
64 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||| | |||||| |
|
|
| T |
237397 |
tataagttgttttcataagttatcctatagagcttacggaaataa |
237441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University