View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10344_6 (Length: 462)

Name: NF10344_6
Description: NF10344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10344_6
NF10344_6
[»] chr3 (12 HSPs)
chr3 (45-450)||(7685744-7686141)
chr3 (1-42)||(5442447-5442488)
chr3 (1-42)||(20255212-20255253)
chr3 (1-42)||(31882898-31882939)
chr3 (1-42)||(51259656-51259697)
chr3 (1-42)||(2135238-2135279)
chr3 (1-46)||(29585043-29585088)
chr3 (1-42)||(33364654-33364695)
chr3 (1-42)||(40094671-40094712)
chr3 (1-42)||(50386332-50386373)
chr3 (1-42)||(50678966-50679007)
chr3 (1-42)||(51925084-51925125)
[»] chr1 (19 HSPs)
chr1 (304-450)||(14656389-14656535)
chr1 (45-185)||(27005152-27005298)
chr1 (1-42)||(21071790-21071831)
chr1 (1-42)||(35387268-35387309)
chr1 (1-43)||(6711002-6711044)
chr1 (1-42)||(844681-844722)
chr1 (1-42)||(1351392-1351433)
chr1 (1-42)||(1601347-1601387)
chr1 (1-42)||(5109904-5109945)
chr1 (1-42)||(8839073-8839114)
chr1 (1-42)||(11772589-11772630)
chr1 (1-42)||(25539994-25540035)
chr1 (1-42)||(31004308-31004349)
chr1 (1-42)||(32289301-32289342)
chr1 (1-42)||(40811328-40811369)
chr1 (1-42)||(45658997-45659038)
chr1 (1-38)||(46155083-46155120)
chr1 (1-42)||(50304827-50304868)
chr1 (1-41)||(38663283-38663323)
[»] chr2 (11 HSPs)
chr2 (220-419)||(9301848-9302046)
chr2 (1-42)||(28824439-28824480)
chr2 (1-41)||(44284796-44284836)
chr2 (4-42)||(18686006-18686044)
chr2 (1-42)||(7761455-7761496)
chr2 (1-42)||(9717368-9717409)
chr2 (1-42)||(34338977-34339018)
chr2 (1-42)||(37863248-37863289)
chr2 (1-42)||(40692464-40692505)
chr2 (1-41)||(7259064-7259104)
chr2 (1-37)||(18793180-18793216)
[»] chr8 (16 HSPs)
chr8 (1-42)||(37618289-37618330)
chr8 (1-42)||(7394711-7394752)
chr8 (1-42)||(31513480-31513521)
chr8 (1-42)||(34063295-34063336)
chr8 (1-42)||(39643050-39643091)
chr8 (1-38)||(40389207-40389244)
chr8 (1-44)||(29610950-29610993)
chr8 (1-43)||(10467231-10467273)
chr8 (1-39)||(22999425-22999463)
chr8 (1-42)||(30501312-30501353)
chr8 (1-42)||(30542919-30542960)
chr8 (1-42)||(34101675-34101716)
chr8 (1-42)||(37474867-37474908)
chr8 (1-42)||(38047513-38047554)
chr8 (1-42)||(41709944-41709985)
chr8 (1-41)||(31732217-31732257)
[»] chr4 (18 HSPs)
chr4 (1-42)||(44324217-44324258)
chr4 (1-42)||(12601056-12601097)
chr4 (1-42)||(38486132-38486173)
chr4 (1-42)||(50727788-50727829)
chr4 (1-42)||(50735802-50735843)
chr4 (1-43)||(23328066-23328108)
chr4 (1-38)||(2114206-2114243)
chr4 (1-42)||(2629826-2629867)
chr4 (1-42)||(2787134-2787175)
chr4 (1-42)||(6776748-6776789)
chr4 (1-42)||(22318259-22318300)
chr4 (2-43)||(29593066-29593107)
chr4 (1-42)||(29616336-29616377)
chr4 (1-42)||(44649039-44649080)
chr4 (1-42)||(46680385-46680426)
chr4 (1-42)||(50178367-50178408)
chr4 (1-42)||(56487162-56487203)
chr4 (1-41)||(54543159-54543198)
[»] chr7 (10 HSPs)
chr7 (1-44)||(3922584-3922627)
chr7 (1-42)||(11250788-11250829)
chr7 (1-42)||(17237247-17237288)
chr7 (1-42)||(46633863-46633904)
chr7 (1-41)||(11321769-11321809)
chr7 (1-41)||(21785042-21785082)
chr7 (1-42)||(10932440-10932481)
chr7 (1-42)||(26994108-26994149)
chr7 (1-42)||(43158569-43158610)
chr7 (1-42)||(48894888-48894929)
[»] chr5 (10 HSPs)
chr5 (1-44)||(3735524-3735567)
chr5 (1-42)||(41459755-41459796)
chr5 (1-39)||(4689589-4689627)
chr5 (1-43)||(24181511-24181553)
chr5 (1-42)||(7770167-7770208)
chr5 (1-42)||(11963508-11963549)
chr5 (1-42)||(27838962-27839003)
chr5 (1-42)||(32528882-32528923)
chr5 (1-42)||(34795054-34795095)
chr5 (1-42)||(40182555-40182596)
[»] scaffold0014 (1 HSPs)
scaffold0014 (1-42)||(102116-102157)
[»] chr6 (13 HSPs)
chr6 (1-42)||(3290826-3290867)
chr6 (1-42)||(11382229-11382270)
chr6 (1-42)||(14807939-14807980)
chr6 (1-42)||(24203529-24203570)
chr6 (4-42)||(32409773-32409811)
chr6 (1-42)||(11613712-11613753)
chr6 (1-42)||(15276858-15276899)
chr6 (1-42)||(17868002-17868043)
chr6 (1-42)||(17877785-17877826)
chr6 (1-42)||(34176997-34177038)
chr6 (1-41)||(166845-166885)
chr6 (1-41)||(3259850-3259890)
chr6 (1-41)||(3932729-3932769)
[»] scaffold0729 (1 HSPs)
scaffold0729 (1-42)||(4467-4508)
[»] scaffold0360 (1 HSPs)
scaffold0360 (1-42)||(15261-15302)


Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 45 - 450
Target Start/End: Original strand, 7685744 - 7686141
Alignment:
Q  45 gtgttaatggagtaactacaagatttttcaacaagagttttattcgcctaaattcttttccttgggaggaactgttattgtttgtaaaaagaaggatggg 144  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  7685744 gtgttaatggagtaactacaagatttttcaataagagttttattcgcctaaattcttttccttgggaggaactgttattgtttgtaaaaagaaggatgga 7685843  T
Q  145 ttcatgtgactgcgtagtgtataggtgattgaacaaggtggtagtaaagaataaatatcatttacaacattgctgagttgtttgatcaacttcaagaact 244  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7685844 ttcatgtgactgtgtagtgtataggtgattgaacaagatggtagtaaagaataaatatcatttacaacattgctgagttgtttgatcaacttcaagaact 7685943  T
Q  245 taagtgtttttctaaaattgatttaaggtatgggtatcactagattaagatgtaagagggaacatatatcaaagacagctttttgcacctgctacgagca 344  Q
    |||||||||||||||||||        ||||||||||||| |||| |||||| |||||||||||||||||||||||| ||||||||||||||||| ||||    
T  7685944 taagtgtttttctaaaatt--------gtatgggtatcacaagatgaagatgcaagagggaacatatatcaaagacaactttttgcacctgctacaagca 7686035  T
Q  345 ttgtaaaattctgattatacctttaagaattattaatgctccaacgtcttttatggatttgatgaattggattttttcaacctttcttagactgatgagt 444  Q
    ||||||||||||| ||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  7686036 ttgtaaaattctggttatacctttaggacttactaatgctccaacgtcttttatggatttgatgaattggattttttcaacctttcttagactgatgggt 7686135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 5442447 - 5442488
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  5442447 ttgttctgtcatgtccttcattttttagcaaatcaaacgcac 5442488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 20255212 - 20255253
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  20255212 ttgttctgtcatgtccttcattttttagcaaatcaaacgcac 20255253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 31882939 - 31882898
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  31882939 ttgttctgtcatgtccttcattttttagcaaatcaaacgcac 31882898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 51259697 - 51259656
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  51259697 ttgttctgtcatgtccttcattttttagcaaatcaaacgcac 51259656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 2135238 - 2135279
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||| ||| ||||||||| |||||||||||||||||    
T  2135238 ttgttctgtcctgtccttcattttttagcaaatcaaacgcac 2135279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 29585043 - 29585088
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcacatgt 46  Q
    |||||||||| ||| ||| ||||| |||||||||||||||||||||    
T  29585043 ttgttctgtcctgtcctttattttttagcaaatcaaacgcacatgt 29585088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 33364695 - 33364654
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||| ||| ||||||||| |||||||||||||||||    
T  33364695 ttgttctgtcttgtccttcattttttagcaaatcaaacgcac 33364654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 40094671 - 40094712
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||| ||| ||||||||| |||||||||||||||||    
T  40094671 ttgttctgtcctgtccttcattttttagcaaatcaaacgcac 40094712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 50386373 - 50386332
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||| ||| ||||||||| |||||||||||||||||    
T  50386373 ttgttctgtcctgtccttcattttttagcaaatcaaacgcac 50386332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 50678966 - 50679007
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    ||||| |||| ||||||||||||| |||||||||||||||||    
T  50678966 ttgttatgtcttgtacttcattttttagcaaatcaaacgcac 50679007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 51925125 - 51925084
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||| | | |||||||||||||||||||||||||||    
T  51925125 ttgttctgtcctatccttcattttctagcaaatcaaacgcac 51925084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 304 - 450
Target Start/End: Original strand, 14656389 - 14656535
Alignment:
Q  304 gaacatatatcaaagacagctttttgcacctgctacgagcattgtaaaattctgattatacctttaagaattattaatgctccaacgtcttttatggatt 403  Q
    |||||||||||||||||| ||||| |||| |||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||| |||||    
T  14656389 gaacatatatcaaagacaacttttcgcacatgctacgagcattgtaaaattctggttatacctttaagacttactaatgctccaacgtcttttagggatt 14656488  T
Q  404 tgatgaattggattttttcaacctttcttagactgatgagtgatatt 450  Q
    |||||||||||||||||||||||||||||||||  ||| ||||||||    
T  14656489 tgatgaattggattttttcaacctttcttagacctatgggtgatatt 14656535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 45 - 185
Target Start/End: Original strand, 27005152 - 27005298
Alignment:
Q  45 gtgttaatggagtaactacaagatttttcaacaagagttttattcgcctaaattcttttccttgggaggaactgttattgtttgtaa------aaagaag 138  Q
    ||||| ||||||||||||||||||||||||| ||||| ||| ||||||||||||||||| ||||||||||||||||||| |||||||      |||||||    
T  27005152 gtgttgatggagtaactacaagatttttcaataagag-tttgttcgcctaaattctttt-cttgggaggaactgttattttttgtaaaaaaagaaagaag 27005249  T
Q  139 --gatgggttcatgtgactgcgtagtgtataggtgattgaacaaggtgg 185  Q
      ||||| |||||||||||| ||||||||||||  |||||| |||||||    
T  27005250 aagatggattcatgtgactgtgtagtgtataggcaattgaataaggtgg 27005298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 21071790 - 21071831
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  21071790 ttgttctgtcatgtacttcattctttagcaaatcaaacgcac 21071831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 35387309 - 35387268
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  35387309 ttgttctgtcatgtccttcattttttagcaaatcaaacgcac 35387268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 6711044 - 6711002
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcaca 43  Q
    |||||||||| ||| ||||||||| ||||||||||||||||||    
T  6711044 ttgttctgtcctgtccttcattttttagcaaatcaaacgcaca 6711002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 844722 - 844681
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||| ||| ||||||||| |||||||||||||||||    
T  844722 ttgttctgtcctgtccttcattttttagcaaatcaaacgcac 844681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 1351433 - 1351392
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||| ||| ||||||||| |||||||||||||||||    
T  1351433 ttgttctgtcctgtccttcattttttagcaaatcaaacgcac 1351392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 1601347 - 1601387
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  1601347 ttgttctgtcatgttcttcatttt-tagcaaatcaaacgcac 1601387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 5109904 - 5109945
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||| || |||||||||| |||||||||||||||||    
T  5109904 ttgttctgtcctgcacttcattttttagcaaatcaaacgcac 5109945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 8839073 - 8839114
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||| ||| ||||||||| |||||||||||||||||    
T  8839073 ttgttctgtcttgtccttcattttttagcaaatcaaacgcac 8839114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 11772630 - 11772589
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    ||||| |||| ||| |||||||||||||||||||||||||||    
T  11772630 ttgttatgtcctgtccttcattttctagcaaatcaaacgcac 11772589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 25539994 - 25540035
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||| | | |||||||||||||||||||||||||||    
T  25539994 ttgttctgtcctatccttcattttctagcaaatcaaacgcac 25540035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 31004308 - 31004349
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||| ||| ||||||||| |||||||||||||||||    
T  31004308 ttgttctgtcctgtccttcattttttagcaaatcaaacgcac 31004349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 32289342 - 32289301
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||| ||| ||||||||| |||||||||||||||||    
T  32289342 ttgttctgtcttgtccttcattttttagcaaatcaaacgcac 32289301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 40811369 - 40811328
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    ||||| |||||||| ||||||||| |||||||||||||||||    
T  40811369 ttgttttgtcatgtccttcattttttagcaaatcaaacgcac 40811328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 45658997 - 45659038
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    ||||| |||| ||| |||||||||||||||||||||||||||    
T  45658997 ttgttttgtcctgtccttcattttctagcaaatcaaacgcac 45659038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 46155083 - 46155120
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaac 38  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  46155083 ttgttctgtcatgtccttcattttttagcaaatcaaac 46155120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 50304827 - 50304868
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||| ||| ||||||||| |||||||||||||||||    
T  50304827 ttgttctgtcctgtccttcattttttagcaaatcaaacgcac 50304868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 38663283 - 38663323
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgca 41  Q
    |||||||||| ||| ||||||||| ||||||||||||||||    
T  38663283 ttgttctgtcttgtccttcattttttagcaaatcaaacgca 38663323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 419
Target Start/End: Complemental strand, 9302046 - 9301848
Alignment:
Q  220 agttgtttgatcaacttcaagaacttaagtgtttttctaaaattgatttaaggtatgggtatcactagattaagatgtaagagggaacatatatcaaaga 319  Q
    ||||||||||||||||||||| |  | |||||||||| || || || ||   || |||||||||| || | ||||| ||||||||| |||||  ||  |     
T  9302046 agttgtttgatcaacttcaaggagcttagtgtttttccaagatagaattgcagtctgggtatcaccagttgaagat-taagagggatcatatgccagtgt 9301948  T
Q  320 cagctttttgcacctgctacgagcattgtaaaattctgattatacctttaagaattattaatgctccaacgtcttttatggatttgatgaattggatttt 419  Q
    || | |||||||| |||| |||||||| | |||||||| |||| |||||  |  ||| |||||||| ||  ||||||||||||||||||| |||||||||    
T  9301947 caacgttttgcacatgctgcgagcattatgaaattctggttatgccttttgggcttactaatgctctaatatcttttatggatttgatgagttggatttt 9301848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 28824480 - 28824439
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  28824480 ttgttctgtcatgtccttcattttttagcaaatcaaacgcac 28824439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 44284796 - 44284836
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgca 41  Q
    |||||||||||||| ||||||||| ||||||||||||||||    
T  44284796 ttgttctgtcatgtccttcattttttagcaaatcaaacgca 44284836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 18686006 - 18686044
Alignment:
Q  4 ttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    ||||||||||| ||||||||| |||||||||||||||||    
T  18686006 ttctgtcatgtccttcattttttagcaaatcaaacgcac 18686044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 7761496 - 7761455
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||| ||| ||||||||| |||||||||||||||||    
T  7761496 ttgttctgtcctgtccttcattttttagcaaatcaaacgcac 7761455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 9717368 - 9717409
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||| ||| ||||||||| |||||||||||||||||    
T  9717368 ttgttctgtcctgtccttcattttttagcaaatcaaacgcac 9717409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 34338977 - 34339018
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||| ||| ||||||||| |||||||||||||||||    
T  34338977 ttgttctgtcctgtccttcattttttagcaaatcaaacgcac 34339018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 37863289 - 37863248
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||||||| ||||||||| ||||||||||| |||||    
T  37863289 ttgttctgtcatgtccttcattttttagcaaatcaagcgcac 37863248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 40692464 - 40692505
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||| ||| ||||||||| |||||||||||||||||    
T  40692464 ttgttctgtcttgtccttcattttttagcaaatcaaacgcac 40692505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 7259064 - 7259104
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgca 41  Q
    |||||||||||||| ||||||||| || |||||||||||||    
T  7259064 ttgttctgtcatgtccttcattttttaacaaatcaaacgca 7259104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 18793216 - 18793180
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaa 37  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  18793216 ttgttctgtcatgtccttcattttttagcaaatcaaa 18793180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 37618330 - 37618289
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  37618330 ttgttctgtcatgtccttcattttctagcaaatcaaacgcac 37618289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 7394752 - 7394711
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  7394752 ttgttctgtcatgtccttcattttttagcaaatcaaacgcac 7394711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 31513521 - 31513480
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  31513521 ttgttctgtcatgtccttcattttttagcaaatcaaacgcac 31513480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 34063295 - 34063336
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  34063295 ttgttctgtcatgtccttcattttttagcaaatcaaacgcac 34063336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 39643050 - 39643091
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  39643050 ttgttctgtcatgtccttcattttttagcaaatcaaacgcac 39643091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 40389207 - 40389244
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaac 38  Q
    |||||||||||||| |||||||||||||||||||||||    
T  40389207 ttgttctgtcatgtccttcattttctagcaaatcaaac 40389244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 29610993 - 29610950
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcacat 44  Q
    |||||||||||||| ||||||||| || ||||||||||||||||    
T  29610993 ttgttctgtcatgtccttcattttttaacaaatcaaacgcacat 29610950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 10467231 - 10467273
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcaca 43  Q
    |||||||||| ||| ||||||||| ||||||||||||||||||    
T  10467231 ttgttctgtcctgtccttcattttttagcaaatcaaacgcaca 10467273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 22999425 - 22999463
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacg 39  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  22999425 ttgttctgtcatgtccttcattttttagcaaatcaaacg 22999463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 30501312 - 30501353
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||| ||||| ||||||||| |||||||||||||||||    
T  30501312 ttgttctgccatgtccttcattttttagcaaatcaaacgcac 30501353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 30542960 - 30542919
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    ||||| |||||||| ||||||||| |||||||||||||||||    
T  30542960 ttgttatgtcatgtccttcattttttagcaaatcaaacgcac 30542919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 34101675 - 34101716
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||| ||| ||||||||| |||||||||||||||||    
T  34101675 ttgttctgtcttgtccttcattttttagcaaatcaaacgcac 34101716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 37474867 - 37474908
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||||| | ||||||||| |||||||||||||||||    
T  37474867 ttgttctgtcatatccttcattttttagcaaatcaaacgcac 37474908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 38047513 - 38047554
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||| ||| ||||||||| |||||||||||||||||    
T  38047513 ttgttctgtcctgtccttcattttttagcaaatcaaacgcac 38047554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 41709944 - 41709985
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||| ||| ||||||||| |||||||||||||||||    
T  41709944 ttgttctgtcctgtccttcattttttagcaaatcaaacgcac 41709985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 31732217 - 31732257
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgca 41  Q
    |||||||||| ||| ||||||||| ||||||||||||||||    
T  31732217 ttgttctgtcctgtccttcattttttagcaaatcaaacgca 31732257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 44324258 - 44324217
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  44324258 ttgttctgtcatgtccttcattttctagcaaatcaaacgcac 44324217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 12601056 - 12601097
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  12601056 ttgttctgtcatgtccttcattttttagcaaatcaaacgcac 12601097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 38486173 - 38486132
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  38486173 ttgttctgtcatgtccttcattttttagcaaatcaaacgcac 38486132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 50727829 - 50727788
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  50727829 ttgttctgtcatgtccttcattttttagcaaatcaaacgcac 50727788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 50735843 - 50735802
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  50735843 ttgttctgtcatgtccttcattttttagcaaatcaaacgcac 50735802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 23328066 - 23328108
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcaca 43  Q
    |||||||||||| | ||||||||| ||||||||||||||||||    
T  23328066 ttgttctgtcatatccttcattttttagcaaatcaaacgcaca 23328108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 2114206 - 2114243
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaac 38  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  2114206 ttgttctgtcatgtccttcattttttagcaaatcaaac 2114243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2629867 - 2629826
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    ||||| |||||||| ||||||||| |||||||||||||||||    
T  2629867 ttgttatgtcatgtccttcattttttagcaaatcaaacgcac 2629826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 2787134 - 2787175
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    ||||| |||||||| ||||||||| |||||||||||||||||    
T  2787134 ttgttatgtcatgtccttcattttttagcaaatcaaacgcac 2787175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 6776748 - 6776789
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||| ||| ||||||||| |||||||||||||||||    
T  6776748 ttgttctgtcctgtccttcattttttagcaaatcaaacgcac 6776789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 22318300 - 22318259
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||||||| ||||||||| || ||||||||||||||    
T  22318300 ttgttctgtcatgtccttcattttttaacaaatcaaacgcac 22318259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 29593066 - 29593107
Alignment:
Q  2 tgttctgtcatgtacttcattttctagcaaatcaaacgcaca 43  Q
    ||||||||| ||| ||||||||| ||||||||||||||||||    
T  29593066 tgttctgtcctgtccttcattttttagcaaatcaaacgcaca 29593107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 29616336 - 29616377
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    ||||||| |||||| ||||||||| |||||||||||||||||    
T  29616336 ttgttctatcatgtccttcattttttagcaaatcaaacgcac 29616377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 44649080 - 44649039
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||| ||| ||||||||| |||||||||||||||||    
T  44649080 ttgttctgtcctgtccttcattttttagcaaatcaaacgcac 44649039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 46680426 - 46680385
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||| ||| ||||||||| |||||||||||||||||    
T  46680426 ttgttctgtcctgtccttcattttttagcaaatcaaacgcac 46680385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 50178408 - 50178367
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||| ||| ||||||||| |||||||||||||||||    
T  50178408 ttgttctgtcctgtccttcattttttagcaaatcaaacgcac 50178367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 56487203 - 56487162
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    ||||||||||||||  |||||||| |||||||||||||||||    
T  56487203 ttgttctgtcatgtctttcattttttagcaaatcaaacgcac 56487162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 54543159 - 54543198
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgca 41  Q
    |||||||||||||| ||||||||| ||||||||||||||||    
T  54543159 ttgttctgtcatgt-cttcattttttagcaaatcaaacgca 54543198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 3922627 - 3922584
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcacat 44  Q
    |||||||||||||| ||||||||| |||||||||||||||||||    
T  3922627 ttgttctgtcatgtccttcattttttagcaaatcaaacgcacat 3922584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 11250788 - 11250829
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  11250788 ttgttctgtcatgtccttcattttttagcaaatcaaacgcac 11250829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 17237247 - 17237288
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  17237247 ttgttctgtcatgtccttcattttttagcaaatcaaacgcac 17237288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 46633863 - 46633904
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  46633863 ttgttctgtcatgtccttcattttttagcaaatcaaacgcac 46633904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 11321809 - 11321769
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgca 41  Q
    |||||||||||||| ||||||||| ||||||||||||||||    
T  11321809 ttgttctgtcatgttcttcattttttagcaaatcaaacgca 11321769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 21785042 - 21785082
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgca 41  Q
    |||||||||||||| ||||||||| ||||||||||||||||    
T  21785042 ttgttctgtcatgtccttcattttttagcaaatcaaacgca 21785082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 10932481 - 10932440
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||| ||| ||||||||| |||||||||||||||||    
T  10932481 ttgttctgtcctgtccttcattttttagcaaatcaaacgcac 10932440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 26994149 - 26994108
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||| ||| ||||||||| |||||||||||||||||    
T  26994149 ttgttctgtcctgtccttcattttttagcaaatcaaacgcac 26994108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 43158610 - 43158569
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||| ||| ||||||||| |||||||||||||||||    
T  43158610 ttgttctgtcttgtccttcattttttagcaaatcaaacgcac 43158569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 48894888 - 48894929
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||| ||| ||||||||| |||||||||||||||||    
T  48894888 ttgttctgtcctgtccttcattttttagcaaatcaaacgcac 48894929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 3735524 - 3735567
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcacat 44  Q
    |||||||||||||| ||||||||| |||||||||||||||||||    
T  3735524 ttgttctgtcatgttcttcattttttagcaaatcaaacgcacat 3735567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 41459755 - 41459796
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  41459755 ttgttctgtcatgtccttcattttttagcaaatcaaacgcac 41459796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 4689627 - 4689589
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacg 39  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  4689627 ttgttctgtcatgtccttcattttttagcaaatcaaacg 4689589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 24181553 - 24181511
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcaca 43  Q
    ||||| |||||||| ||||||||| ||||||||||||||||||    
T  24181553 ttgttttgtcatgtccttcattttttagcaaatcaaacgcaca 24181511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 7770208 - 7770167
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    ||||||| |||||| ||||||||| |||||||||||||||||    
T  7770208 ttgttctatcatgtccttcattttttagcaaatcaaacgcac 7770167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 11963508 - 11963549
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||| ||| ||||||||| |||||||||||||||||    
T  11963508 ttgttctgtcctgtccttcattttttagcaaatcaaacgcac 11963549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 27839003 - 27838962
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||||||| ||||||||| || ||||||||||||||    
T  27839003 ttgttctgtcatgtccttcattttttaacaaatcaaacgcac 27838962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 32528882 - 32528923
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||| ||||||||| ||||||||| |||||||||||||||||    
T  32528882 ttgtcctgtcatgtccttcattttttagcaaatcaaacgcac 32528923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 34795054 - 34795095
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||||||| ||||||||| || ||||||||||||||    
T  34795054 ttgttctgtcatgtccttcattttttaacaaatcaaacgcac 34795095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 40182555 - 40182596
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||||| | ||||||||| |||||||||||||||||    
T  40182555 ttgttctgtcatttccttcattttttagcaaatcaaacgcac 40182596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 102116 - 102157
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  102116 ttgttctgtcatgtccttcattttttagcaaatcaaacgcac 102157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 3290826 - 3290867
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  3290826 ttgttctgtcatgtccttcattttttagcaaatcaaacgcac 3290867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 11382229 - 11382270
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  11382229 ttgttctgtcatgtccttcattttttagcaaatcaaacgcac 11382270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 14807980 - 14807939
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  14807980 ttgttctgtcatgtccttcattttttagcaaatcaaacgcac 14807939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 24203529 - 24203570
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  24203529 ttgttctgtcatgtccttcattttttagcaaatcaaacgcac 24203570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 32409811 - 32409773
Alignment:
Q  4 ttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    ||||||||||| ||||||||| |||||||||||||||||    
T  32409811 ttctgtcatgtccttcattttttagcaaatcaaacgcac 32409773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 11613753 - 11613712
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||| ||| ||||||||| |||||||||||||||||    
T  11613753 ttgttctgtcctgtccttcattttttagcaaatcaaacgcac 11613712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 15276899 - 15276858
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||||||| ||||||||| |||||||||||| ||||    
T  15276899 ttgttctgtcatgtccttcattttttagcaaatcaaatgcac 15276858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 17868002 - 17868043
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||| ||| ||||||||| |||||||||||||||||    
T  17868002 ttgttctgtcctgtccttcattttttagcaaatcaaacgcac 17868043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 17877785 - 17877826
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||| ||| ||||||||| |||||||||||||||||    
T  17877785 ttgttctgtcctgtccttcattttttagcaaatcaaacgcac 17877826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 34176997 - 34177038
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||| ||| ||||||||| |||||||||||||||||    
T  34176997 ttgttctgtcttgtccttcattttttagcaaatcaaacgcac 34177038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 166885 - 166845
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgca 41  Q
    |||||||||||| | ||||||||| ||||||||||||||||    
T  166885 ttgttctgtcatatccttcattttttagcaaatcaaacgca 166845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 3259850 - 3259890
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgca 41  Q
    ||||| |||||||| ||||||||| ||||||||||||||||    
T  3259850 ttgttttgtcatgtccttcattttttagcaaatcaaacgca 3259890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 3932769 - 3932729
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgca 41  Q
    |||||||||| ||| ||||||||| ||||||||||||||||    
T  3932769 ttgttctgtcctgtccttcattttttagcaaatcaaacgca 3932729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0729 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0729
Description:

Target: scaffold0729; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4508 - 4467
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    |||||||||| ||| ||||||||| |||||||||||||||||    
T  4508 ttgttctgtcctgtccttcattttttagcaaatcaaacgcac 4467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 15302 - 15261
Alignment:
Q  1 ttgttctgtcatgtacttcattttctagcaaatcaaacgcac 42  Q
    ||||||| |||||| ||||||||| |||||||||||||||||    
T  15302 ttgttctatcatgttcttcattttttagcaaatcaaacgcac 15261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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