View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10344_8 (Length: 319)

Name: NF10344_8
Description: NF10344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10344_8
NF10344_8
[»] chr4 (14 HSPs)
chr4 (130-308)||(52191200-52191385)
chr4 (130-253)||(51038769-51038893)
chr4 (130-260)||(6112636-6112766)
chr4 (130-260)||(49243821-49243951)
chr4 (130-254)||(45829318-45829442)
chr4 (130-254)||(46192365-46192489)
chr4 (130-319)||(44275712-44275908)
chr4 (130-254)||(7217771-7217895)
chr4 (130-254)||(54849794-54849918)
chr4 (130-260)||(3672280-3672410)
chr4 (130-208)||(28093203-28093281)
chr4 (130-251)||(35544918-35545039)
chr4 (130-193)||(25437007-25437070)
chr4 (130-210)||(21391060-21391140)
[»] chr2 (10 HSPs)
chr2 (130-262)||(44958119-44958251)
chr2 (130-260)||(33732575-33732705)
chr2 (130-310)||(16089828-16090014)
chr2 (130-210)||(36315567-36315647)
chr2 (169-254)||(24137153-24137238)
chr2 (130-254)||(37914297-37914421)
chr2 (140-262)||(37498916-37499040)
chr2 (130-262)||(3830950-3831080)
chr2 (130-262)||(14573001-14573133)
chr2 (184-253)||(41188829-41188898)
[»] chr6 (4 HSPs)
chr6 (130-289)||(14022940-14023105)
chr6 (130-254)||(3986966-3987090)
chr6 (129-309)||(24208449-24208636)
chr6 (130-260)||(3118102-3118232)
[»] chr3 (17 HSPs)
chr3 (130-260)||(36370393-36370523)
chr3 (146-254)||(53638157-53638265)
chr3 (130-260)||(46111999-46112129)
chr3 (130-260)||(22894686-22894816)
chr3 (130-260)||(34749953-34750083)
chr3 (130-262)||(21559567-21559699)
chr3 (130-210)||(38231299-38231379)
chr3 (130-254)||(43999995-44000119)
chr3 (130-210)||(29460666-29460746)
chr3 (130-210)||(29471518-29471598)
chr3 (130-254)||(36749412-36749536)
chr3 (142-254)||(48200703-48200815)
chr3 (130-254)||(51339844-51339966)
chr3 (132-207)||(20856259-20856334)
chr3 (130-251)||(30735560-30735680)
chr3 (156-253)||(39467163-39467260)
chr3 (221-262)||(29472906-29472947)
[»] chr8 (11 HSPs)
chr8 (129-289)||(33726016-33726183)
chr8 (130-262)||(12665350-12665483)
chr8 (130-254)||(30432345-30432469)
chr8 (130-260)||(31318811-31318941)
chr8 (172-262)||(38845076-38845165)
chr8 (130-260)||(42162604-42162734)
chr8 (130-262)||(36189222-36189354)
chr8 (130-260)||(44081786-44081916)
chr8 (130-210)||(31552-31632)
chr8 (145-210)||(42668886-42668951)
chr8 (130-262)||(18184559-18184691)
[»] chr5 (17 HSPs)
chr5 (130-262)||(1815669-1815801)
chr5 (130-260)||(2237282-2237412)
chr5 (130-260)||(39370933-39371063)
chr5 (130-254)||(17225325-17225447)
chr5 (129-210)||(19596172-19596253)
chr5 (130-262)||(27553426-27553558)
chr5 (130-210)||(13347134-13347214)
chr5 (167-309)||(31800601-31800750)
chr5 (130-254)||(40888003-40888127)
chr5 (135-260)||(14831555-14831680)
chr5 (130-254)||(19124533-19124655)
chr5 (130-210)||(33404541-33404621)
chr5 (130-260)||(9408094-9408224)
chr5 (130-199)||(3725731-3725800)
chr5 (133-250)||(41003915-41004031)
chr5 (130-210)||(12164257-12164337)
chr5 (130-289)||(4300563-4300728)
[»] chr7 (21 HSPs)
chr7 (130-253)||(38321015-38321138)
chr7 (129-309)||(13108153-13108339)
chr7 (130-262)||(31148296-31148428)
chr7 (130-309)||(42220962-42221148)
chr7 (129-254)||(23980136-23980261)
chr7 (130-310)||(5811161-5811348)
chr7 (130-254)||(7699944-7700068)
chr7 (130-254)||(7700142-7700266)
chr7 (130-254)||(7700340-7700464)
chr7 (130-254)||(7700538-7700662)
chr7 (130-262)||(21807375-21807507)
chr7 (130-262)||(36346618-36346749)
chr7 (146-262)||(45782713-45782829)
chr7 (130-260)||(34108432-34108562)
chr7 (130-260)||(26972258-26972388)
chr7 (145-254)||(28307556-28307665)
chr7 (130-262)||(34828072-34828203)
chr7 (167-312)||(46475067-46475220)
chr7 (142-254)||(36957447-36957559)
chr7 (130-254)||(30887706-30887830)
chr7 (167-253)||(20086690-20086776)
[»] chr1 (10 HSPs)
chr1 (130-289)||(19258692-19258857)
chr1 (130-260)||(39249918-39250048)
chr1 (130-207)||(10146972-10147049)
chr1 (130-309)||(34307136-34307323)
chr1 (14-95)||(48275253-48275343)
chr1 (145-251)||(9642929-9643036)
chr1 (130-262)||(28647359-28647491)
chr1 (130-253)||(2509030-2509153)
chr1 (179-207)||(8848961-8848989)
chr1 (171-207)||(29099863-29099899)
[»] scaffold0062 (1 HSPs)
scaffold0062 (130-253)||(6724-6847)
[»] scaffold0043 (1 HSPs)
scaffold0043 (130-210)||(87269-87348)


Alignment Details
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 130 - 308
Target Start/End: Complemental strand, 52191385 - 52191200
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    |||||||||||||| |||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  52191385 ttatacatggaccaccttaggtggcatataccttttaacagccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggagatgatg 52191286  T
Q  230 atgtgatgcaaaattactaaaatactcctaaca------gtgtacacgagaggtgtataaaaaa-ggtatctttctatctttttcc 308  Q
    ||||||||| |||||||||||||||||||||||      ||||||||||||||||||||||||| ||| |||||| ||||||||||    
T  52191285 atgtgatgcgaaattactaaaatactcctaacatatggggtgtacacgagaggtgtataaaaaagggtgtctttcaatctttttcc 52191200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 130 - 253
Target Start/End: Original strand, 51038769 - 51038893
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggat-aagaggggatgat 228  Q
    ||||| |||||||| |||||||||| ||||   ||| ||||||||||| ||||||||||||||||||||||||||||||||  ||| || ||||| ||||    
T  51038769 ttatatatggaccaccttaggtggcatacaaactttgacacccacacacaattgtgacatgtgacaaaaacattgaaagaagagatgaaaagggggtgat 51038868  T
Q  229 gatgtgatgcaaaattactaaaata 253  Q
    | |||||||  ||||||||||||||    
T  51038869 ggtgtgatgtgaaattactaaaata 51038893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 130 - 260
Target Start/End: Original strand, 6112636 - 6112766
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| |||| ||||| |||| |||||| ||| ||||||||||| | |||||||| ||| |||||||||||||||||  ||| | |  ||||||||    
T  6112636 ttatacatgaaccaccttagatggcatacaccattttacacccacacatatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaaggatgatg 6112735  T
Q  230 atgtgatgcaaaattactaaaatactcctaa 260  Q
    || ||||| ||||||||| |||||| |||||    
T  6112736 atatgatgtaaaattactcaaatacccctaa 6112766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 130 - 260
Target Start/End: Original strand, 49243821 - 49243951
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| |||| |||||||||| |||||| ||| ||| ||||||| | |||||||||||| |||||||||||||||||  ||||| |     |||||    
T  49243821 ttatacatgaaccaccttaggtggcatacacccttttacatccacacacatttgtgacatgtggcaaaaacattgaaagaagagataaaaaaaagtgatg 49243920  T
Q  230 atgtgatgcaaaattactaaaatactcctaa 260  Q
    || ||||| |||||||||||||||| |||||    
T  49243921 atatgatgtaaaattactaaaatacccctaa 49243951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 254
Target Start/End: Complemental strand, 45829442 - 45829318
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| ||||  ||||||| | |||||||||| ||||||||||| | |||||||||||| |||||||||||||||||  ||||| | ||| ||||     
T  45829442 ttatacatgaaccactttaggtgacatacacctttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagataaaaaggggtgata 45829343  T
Q  230 atgtgatgcaaaattactaaaatac 254  Q
    ||||||||  |||| | ||||||||    
T  45829342 atgtgatgtgaaatgattaaaatac 45829318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 254
Target Start/End: Original strand, 46192365 - 46192489
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| | || |||||||||| |||||| ||| ||||||||||| | |||||||||||| |||||||||||||||||  ||||| | ||| ||||     
T  46192365 ttatacatgaatcaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagataaaaaggggtgata 46192464  T
Q  230 atgtgatgcaaaattactaaaatac 254  Q
    ||||||||  |||| | ||||||||    
T  46192465 atgtgatgtgaaatgattaaaatac 46192489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 319
Target Start/End: Original strand, 44275712 - 44275908
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||  |||| |||||||||| || ||| ||| |||| |||||| | |||||||| ||| |||||| ||||||||||  ||| | |  || |||||    
T  44275712 ttatacataaaccaccttaggtggcatataccattttacactcacacacatttgtgacacgtgccaaaaatattgaaagaagagattaaaaagggtgatg 44275811  T
Q  230 atgtgatgcaaaattactaaaatactcctaaca------gtgtacacgagaggtgtat-aaaaaaggtatctttctatctttttcctataattaatg 319  Q
    || ||||| |||||||||||||||| |||||||      |||||||  |||||||||| ||||| ||| ||| |||||||||||||| || ||||||    
T  44275812 atatgatgtaaaattactaaaatacccctaacacatggggtgtacataagaggtgtatgaaaaagggtgtctatctatctttttcctttatttaatg 44275908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 254
Target Start/End: Original strand, 7217771 - 7217895
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||  |||| |||||||||| |||||| ||||||||| ||||| | |||||||| ||| |||||||||| ||| ||  ||||| |  || |||||    
T  7217771 ttatacataaaccaccttaggtggcatacaccctttaacacctacacacatttgtgacacgtggcaaaaacattaaaataagagataaaaaagggtgatg 7217870  T
Q  230 atgtgatgcaaaattactaaaatac 254  Q
    || ||||| ||||||||||||||||    
T  7217871 atatgatgtaaaattactaaaatac 7217895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 254
Target Start/End: Original strand, 54849794 - 54849918
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| |||| ||||| | ||||||||  ||| | ||||||||  | |||||||| |||||||||| ||||||||||  ||| |||| ||||||||    
T  54849794 ttatacatgaaccaccttagatagcgtacacactttgatacccacacgcagttgtgacaagtgacaaaaatattgaaagaagagatgagagaggatgatg 54849893  T
Q  230 atgtgatgcaaaattactaaaatac 254  Q
    ||||||||  |||||| ||||||||    
T  54849894 atgtgatgtgaaattattaaaatac 54849918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 260
Target Start/End: Original strand, 3672280 - 3672410
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| |||| |||||||||| |||||| ||| ||| ||||||| | |||||||| ||| |||||||||||||||||  ||| | |  || |||||    
T  3672280 ttatacatgaaccaccttaggtggcatacacccttttacatccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgatg 3672379  T
Q  230 atgtgatgcaaaattactaaaatactcctaa 260  Q
    || ||||| | ||||||| |||||| |||||    
T  3672380 atatgatgtataattactcaaatacccctaa 3672410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 208
Target Start/End: Complemental strand, 28093281 - 28093203
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaag 208  Q
    ||||||||| |||| |||||||||| |||||| ||| ||||||||||| | |||||||| ||| |||||||||||||||    
T  28093281 ttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaag 28093203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 130 - 251
Target Start/End: Original strand, 35544918 - 35545039
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| ||||||||||||||  |||||| ||| ||| ||||| | | |||||| | ||| |||||||||||||||||   |||| | ||| |||||    
T  35544918 ttatacatgaaccatcttaggtggtatacaccattttacatccacatacatttgtgatacgtggcaaaaacattgaaagaagatataaaaaggggtgatg 35545017  T
Q  230 atgtgatgcaaaattactaaaa 251  Q
    || ||||| |||||||||||||    
T  35545018 atatgatgtaaaattactaaaa 35545039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 25437070 - 25437007
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtga 193  Q
    |||||||||||||| |||||||| | |||||||||||||| ||| ||| |||||||||||||||    
T  25437070 ttatacatggaccaccttaggtgacatacaccttttaacatccatacacaattgtgacatgtga 25437007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 21391140 - 21391060
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 210  Q
    ||||||||| |||| ||||| |||| |||||| ||| ||||||||||| | |||||||| ||| |||||| ||||||||||    
T  21391140 ttatacatgaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaaaatattgaaagaa 21391060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 130 - 262
Target Start/End: Original strand, 44958119 - 44958251
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| |||| |||||||||| |||||| ||| ||||||||||| | |||||||||||| |||||||||||||||||  ||||| |  || |||||    
T  44958119 ttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagataaaaaagggtgatg 44958218  T
Q  230 atgtgatgcaaaattactaaaatactcctaaca 262  Q
    || ||||| |||||||||||||||| |||||||    
T  44958219 atatgatgtaaaattactaaaatacccctaaca 44958251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 260
Target Start/End: Original strand, 33732575 - 33732705
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| |||| |||||||||| |||||| ||| ||||||||||| | |||||||||||| |||||||||||||||||  ||| | |  || || ||    
T  33732575 ttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaaagggtggtg 33732674  T
Q  230 atgtgatgcaaaattactaaaatactcctaa 260  Q
    || ||||| |||||||||||||||| |||||    
T  33732675 atatgatgtaaaattactaaaatacccctaa 33732705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 310
Target Start/End: Original strand, 16089828 - 16090014
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| |||| |||| ||||| |||||| ||| ||||||||||| | |||||||| ||| |||||||||||||||||  ||||| |  || || ||    
T  16089828 ttatacatgaaccaccttaagtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagataaaaaagg-tggtg 16089926  T
Q  230 atgtgatgcaaaattactaaaatactcctaaca------gtgtacacgagaggtgtat-aaaaaaggtatctttctatctttttccta 310  Q
    || ||||| |||||||||||||||| |||||||      |||||||  |||||||||| ||||||||| |||  ||||||||||||||    
T  16089927 atatgatgtaaaattactaaaatacccctaacacatggggtgtacataagaggtgtatgaaaaaaggtgtctacctatctttttccta 16090014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 36315567 - 36315647
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 210  Q
    ||||||||| |||| |||||||||| |||||| ||| ||||||||||| | |||||||||||| |||||||||||||||||    
T  36315567 ttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaa 36315647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 254
Target Start/End: Complemental strand, 24137238 - 24137153
Alignment:
Q  169 acccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatgatgtgatgcaaaattactaaaatac 254  Q
    ||||||||| | ||||||||||||||||||||||||||||||  ||| | | ||||||| |||||||||  |||||||||||||||    
T  24137238 acccacacacatttgtgacatgtgacaaaaacattgaaagaagagatgaaaagggatgaggatgtgatgtgaaattactaaaatac 24137153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 254
Target Start/End: Complemental strand, 37914421 - 37914297
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||  |||| |||||||||| |||||| ||| ||| ||||||| | |||||||||||| |||||||||||||||||  ||||| | ||| ||||     
T  37914421 ttatacataaaccaccttaggtggcatacacccttttacatccacacacatttgtgacatgtggcaaaaacattgaaagaagagataaaaaggggtgata 37914322  T
Q  230 atgtgatgcaaaattactaaaatac 254  Q
    ||||||||  |||| | ||||||||    
T  37914321 atgtgatgtgaaatgattaaaatac 37914297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 140 - 262
Target Start/End: Complemental strand, 37499040 - 37498916
Alignment:
Q  140 accatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggat--aagaggggatgatgatgtgatg 237  Q
    |||||||||  |||| |||| | ||| |||| |||||| | |||||||||||| |||||||||||||||||  |||  || || || ||||||| |||||    
T  37499040 accatcttaactggcatacatccttttacactcacacacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaaagagggtgatgatatgatg 37498941  T
Q  238 caaaattactaaaatactcctaaca 262  Q
     |||||||||||||||| |||||||    
T  37498940 taaaattactaaaatacccctaaca 37498916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 262
Target Start/End: Complemental strand, 3831080 - 3830950
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| |||| |||||||| | |||||| ||| ||||||||||  | |||||||| ||| |||||||||||||||||  ||| | | | | ||||     
T  3831080 ttatacatgaaccaccttaggtgacatacacccttttacacccacac--atttgtgacacgtggcaaaaacattgaaagaagagatgaaaagtggtgatt 3830983  T
Q  230 atgtgatgcaaaattactaaaatactcctaaca 262  Q
    || ||||| ||||||||||| |||| |||||||    
T  3830982 atctgatgtaaaattactaatatacccctaaca 3830950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 262
Target Start/End: Original strand, 14573001 - 14573133
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||  |||| |||||||||| | |||| ||| ||| ||||||| | |||||||| ||  |||||||||||||||||  |||   |  || |||||    
T  14573001 ttatacataaaccaccttaggtggcatccacccttttacatccacacacatttgtgacacgtagcaaaaacattgaaagaagagatggaaaagggtgatg 14573100  T
Q  230 atgtgatgcaaaattactaaaatactcctaaca 262  Q
    || ||||| |||||||||||||||| |||||||    
T  14573101 atatgatgtaaaattactaaaatacccctaaca 14573133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 41188829 - 41188898
Alignment:
Q  184 tgacatgtgacaaaaacattgaaagaaaggataagaggggatgatgatgtgatgcaaaattactaaaata 253  Q
    ||||||||| |||||||||||||| |    || | | ||||||||||||||||| |||||||||||||||    
T  41188829 tgacatgtggcaaaaacattgaaaaatgatatgaaaagggatgatgatgtgatgtaaaattactaaaata 41188898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 130 - 289
Target Start/End: Original strand, 14022940 - 14023105
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||  |||| |||||||||| |||||| ||| ||||||||||| | |||||||||||| |||||||||||||||||  ||| | | ||| ||| |    
T  14022940 ttatacataaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagatgacaaggggtgacg 14023039  T
Q  230 atgtgatgcaaaattactaaaatactcctaaca------gtgtacacgagaggtgtataaaaaagg 289  Q
    ||||||||  ||||||||||||||| |||||||      ||||||| | |||||||||||||||||    
T  14023040 atgtgatgtgaaattactaaaatacccctaacacatgaggtgtacatgggaggtgtataaaaaagg 14023105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 254
Target Start/End: Complemental strand, 3987090 - 3986966
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| |||| |||||||||| |||||| ||| ||||||||||| | |||||||| ||| |||||||||||||||||  ||| | | ||||||||     
T  3987090 ttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaagggatgata 3986991  T
Q  230 atgtgatgcaaaattactaaaatac 254  Q
    || ||||| ||||||||| ||||||    
T  3986990 atatgatgtaaaattactcaaatac 3986966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 309
Target Start/End: Original strand, 24208449 - 24208636
Alignment:
Q  129 gttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgat 228  Q
    |||||||||  |||||| |||||||  |||||  ||| ||||||||||| | |||||| ||||| |||||||||||||||||  ||| | |  || |||     
T  24208449 gttatacataaaccatcataggtggtatacactattttacacccacacacatttgtgatatgtggcaaaaacattgaaagaagagatgaaaaagggtgag 24208548  T
Q  229 gatgtgatgcaaaattactaaaatactcctaaca------gtgtacacgagaggtgtataaaaaagg-tatctttctatctttttcct 309  Q
    |||||||||  ||||||||||||||| |||||||      ||||| | ||||||||||||||||||| | |||  |||||||||||||    
T  24208549 gatgtgatgtgaaattactaaaatacccctaacacatgaggtgtaaatgagaggtgtataaaaaaggatgtctacctatctttttcct 24208636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 260
Target Start/End: Complemental strand, 3118232 - 3118102
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||| ||| |||| |||||||||| |||||| ||| |||| |||||| | |||||||| ||| |||||||||||||||||  ||||| |  || || ||    
T  3118232 ttatatatgaaccaccttaggtggcatacacccttttacactcacacacatttgtgacacgtggcaaaaacattgaaagaatagataaaaaagggtggtg 3118133  T
Q  230 atgtgatgcaaaattactaaaatactcctaa 260  Q
    |  ||||| |||||||||||||||| |||||    
T  3118132 acatgatgtaaaattactaaaatacccctaa 3118102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 130 - 260
Target Start/End: Complemental strand, 36370523 - 36370393
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| |||| |||||||| | |||||||||| ||||||||||| | ||||||||||||||||||||||||||||||  ||| | |  || |||||    
T  36370523 ttatacatgaaccaccttaggtgtcatacacctttttacacccacacacatttgtgacatgtgacaaaaacattgaaagaagagatgaaaaagggtgatg 36370424  T
Q  230 atgtgatgcaaaattactaaaatactcctaa 260  Q
    || ||||| ||||||||| |||||| |||||    
T  36370423 atatgatgtaaaattactcaaatacccctaa 36370393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 146 - 254
Target Start/End: Original strand, 53638157 - 53638265
Alignment:
Q  146 ttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatgatgtgatgcaaaatta 245  Q
    ||||||||| |||||| ||||||||||||||| ||| ||||||||||  |||||||| |||||||  ||| ||||||| ||||||||||||| ||||||     
T  53638157 ttaggtggcatacaccctttaacacccacacacaatcgtgacatgtggtaaaaacatggaaagaagagatgagagggggtgatgatgtgatgtaaaattg 53638256  T
Q  246 ctaaaatac 254  Q
    |||||||||    
T  53638257 ctaaaatac 53638265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 260
Target Start/End: Complemental strand, 46112129 - 46111999
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| ||||||||||||| | |||||| ||| ||| ||||||| | |||||||||||| |||||||||||||||||  ||| | |  || |||||    
T  46112129 ttatacatgaaccatcttaggtgacatacaccattttacatccacacacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaaagggtgatg 46112030  T
Q  230 atgtgatgcaaaattactaaaatactcctaa 260  Q
    || ||||| |||||||||||||||| |||||    
T  46112029 atatgatgtaaaattactaaaatacccctaa 46111999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 130 - 260
Target Start/End: Original strand, 22894686 - 22894816
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| |||| |||||||||| |||||| ||| ||||||||||| | |||||||| ||| |||||||||||||||||  ||| | |  ||||||||    
T  22894686 ttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaaggatgatg 22894785  T
Q  230 atgtgatgcaaaattactaaaatactcctaa 260  Q
    || ||||| | ||||||| |||||| |||||    
T  22894786 atatgatgtataattactcaaatacccctaa 22894816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 130 - 260
Target Start/End: Complemental strand, 34750083 - 34749953
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| |||| |||||||||| |||||| ||| ||||||||||| | |||||||| ||| |||||||||||||||||  ||| | |  || |||||    
T  34750083 ttatacatgaaccaccttaggtggcatacacccttttacacccacacatatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgatg 34749984  T
Q  230 atgtgatgcaaaattactaaaatactcctaa 260  Q
    || ||||| ||||||||| |||||| |||||    
T  34749983 atatgatgtaaaattactcaaatacccctaa 34749953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 262
Target Start/End: Original strand, 21559567 - 21559699
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||  ||||||||||||||| |||||| ||| ||||||||||| | |||||||| ||| |||||| ||||||||||  ||| | |  || | |||    
T  21559567 ttatacataaaccatcttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaatattgaaagaagagatgaaaaagggtaatg 21559666  T
Q  230 atgtgatgcaaaattactaaaatactcctaaca 262  Q
    || ||||| |||||||||||||||| |||||||    
T  21559667 atatgatgtaaaattactaaaatacccctaaca 21559699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 38231299 - 38231379
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 210  Q
    ||||||||| |||| |||||||||| |||||| ||| ||||||||||| | |||||||||||| |||||||||||||||||    
T  38231299 ttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaa 38231379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 254
Target Start/End: Original strand, 43999995 - 44000119
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| |||| |||||||| | |||||||||| ||||||||||| | |||||||| ||| |||||||||||||||||  ||| | |  || |||||    
T  43999995 ttatacatgaaccaccttaggtgtcatacacctttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgatg 44000094  T
Q  230 atgtgatgcaaaattactaaaatac 254  Q
    || ||||| ||||||||| ||||||    
T  44000095 atatgatgtaaaattactcaaatac 44000119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 29460666 - 29460746
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 210  Q
    ||||||||| |||| |||||||||| |||||| ||| |||||||||||   |||||||||||| |||||||||||||||||    
T  29460666 ttatacatgaaccaccttaggtggcatacacccttttacacccacacacttttgtgacatgtggcaaaaacattgaaagaa 29460746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 29471518 - 29471598
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 210  Q
    ||||||||| |||| |||||||||| |||||| ||| |||||||||||   |||||||||||| |||||||||||||||||    
T  29471518 ttatacatgaaccaccttaggtggcatacacccttttacacccacacacttttgtgacatgtggcaaaaacattgaaagaa 29471598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 254
Target Start/End: Original strand, 36749412 - 36749536
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| |||| ||||| || | |||||||||| ||||||||||| | |||||||| ||| |||||||||||||||||  ||| | |  || |||||    
T  36749412 ttatacatgaaccaccttagatgtcatacacctttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgatg 36749511  T
Q  230 atgtgatgcaaaattactaaaatac 254  Q
    || ||||| ||||||||| ||||||    
T  36749512 atatgatgtaaaattactcaaatac 36749536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 254
Target Start/End: Original strand, 48200703 - 48200815
Alignment:
Q  142 catcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatgatgtgatgcaaa 241  Q
    ||||||||||||| |||||||||| ||| ||||| | | |||||||| ||| |||||| ||||||||||  ||| | |  |||||||||| ||||| |||    
T  48200703 catcttaggtggcatacacctttttacatccacatatatttgtgacacgtggcaaaaatattgaaagaagagatgaaaaaggatgatgatatgatgtaaa 48200802  T
Q  242 attactaaaatac 254  Q
    |||||| ||||||    
T  48200803 attactcaaatac 48200815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 254
Target Start/End: Complemental strand, 51339966 - 51339844
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||  |||| |||||||||| |||| | ||| |||||||||||   |||||||| ||| |||||||||||||||||  ||| | |  || |||||    
T  51339966 ttatacataaaccaccttaggtggcatacatccttttacacccacacat--ttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgatg 51339869  T
Q  230 atgtgatgcaaaattactaaaatac 254  Q
    || ||||| ||||||||||||||||    
T  51339868 atatgatgtaaaattactaaaatac 51339844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 20856334 - 20856259
Alignment:
Q  132 atacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaa 207  Q
    ||||||| ||||  ||||||||| |||||| ||| ||||||| ||| | |||||||||||| ||||||||||||||    
T  20856334 atacatgaaccactttaggtggcatacacccttttacacccatacacatttgtgacatgtggcaaaaacattgaaa 20856259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 251
Target Start/End: Complemental strand, 30735680 - 30735560
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||| ||| |||| ||||| |||| |||||| ||| ||||||||||| |  ||||||| ||| |||||||||||||||||   |||| | ||| |||||    
T  30735680 ttatatatgaaccaccttagatggcatacacccttttacacccacacacatctgtgacacgtggcaaaaacattgaaagaagatataaaaaggg-tgatg 30735582  T
Q  230 atgtgatgcaaaattactaaaa 251  Q
    || |||||  ||||||||||||    
T  30735581 atatgatgttaaattactaaaa 30735560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 253
Target Start/End: Complemental strand, 39467260 - 39467163
Alignment:
Q  156 tacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatgatgtgatgcaaaattactaaaata 253  Q
    |||||| ||| ||||||||||| | |||||||||||| |||||| ||||||||||  ||| | | ||| ||| ||||||||   ||||||||||||||    
T  39467260 tacacccttttacacccacacatatttgtgacatgtgccaaaaatattgaaagaagagatgaaaaggggtgaggatgtgatatgaaattactaaaata 39467163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 29472906 - 29472947
Alignment:
Q  221 gggatgatgatgtgatgcaaaattactaaaatactcctaaca 262  Q
    ||||||||||| ||||| |||||||||||||||| |||||||    
T  29472906 gggatgatgatatgatgtaaaattactaaaatacccctaaca 29472947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 129 - 289
Target Start/End: Original strand, 33726016 - 33726183
Alignment:
Q  129 gttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggat-aagaggggatga 227  Q
    |||||||||  ||||  ||||||||| |||||||||| ||||||||| | | |||||||||||| |||||||||||||||||  ||| || || ||||||    
T  33726016 gttatacataaaccactttaggtggcatacacctttttacacccacaaacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaagtggatga 33726115  T
Q  228 tgatgtgatgcaaaattactaaaatactcctaac------agtgtacacgagaggtgtataaaaaagg 289  Q
     |||||||||  ||||||||||||||| ||||||      |||||||| | |||||||||||||||||    
T  33726116 cgatgtgatgtgaaattactaaaatacccctaacacatgaagtgtacatgggaggtgtataaaaaagg 33726183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 262
Target Start/End: Original strand, 12665350 - 12665483
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggat-aagaggggatgat 228  Q
    ||||||||| |||| |||||||||| |||||| ||| |||| |||||| | |||| ||||||| |||||||||||||||||  ||| || |  || ||||    
T  12665350 ttatacatgaaccaccttaggtggcatacacccttttacactcacacacatttgtaacatgtggcaaaaacattgaaagaagagataaaaaaagggtgat 12665449  T
Q  229 gatgtgatgcaaaattactaaaatactcctaaca 262  Q
    ||| ||||| |||||||||||||||| |||||||    
T  12665450 gatatgatgtaaaattactaaaatacccctaaca 12665483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 254
Target Start/End: Original strand, 30432345 - 30432469
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| |||| ||||| |||| |||||| ||| | ||||||||| | |||||||| ||| |||||||||||||||||  ||| | | ||| |||||    
T  30432345 ttatacatgaaccaccttagatggcatacacccttttatacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaggggtgatg 30432444  T
Q  230 atgtgatgcaaaattactaaaatac 254  Q
    || ||||| ||||||||||||||||    
T  30432445 atatgatgtaaaattactaaaatac 30432469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 130 - 260
Target Start/End: Original strand, 31318811 - 31318941
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| |||| |||||||||| || | ||||| ||| ||||||| | |||||||| ||| |||||||||||||||||  ||| | |  || |||||    
T  31318811 ttatacatgaaccaccttaggtggcatataactttttacatccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgatg 31318910  T
Q  230 atgtgatgcaaaattactaaaatactcctaa 260  Q
    || ||||| ||||||||| ||||||||||||    
T  31318911 atatgatgtaaaattactcaaatactcctaa 31318941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 172 - 262
Target Start/End: Complemental strand, 38845165 - 38845076
Alignment:
Q  172 cacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatgatgtgatgcaaaattactaaaatactcctaaca 262  Q
    |||||| ||||||||||||||  ||||| ||||||||||| ||||||||||| |||||||||||||  ||||||||||||||  |||||||    
T  38845165 cacacacaattgtgacatgtggaaaaaatattgaaagaaaagataagagggg-tgatgatgtgatgagaaattactaaaataaccctaaca 38845076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 130 - 260
Target Start/End: Original strand, 42162604 - 42162734
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| |||| |||||||| | |||||| ||| ||||||| ||| | |||||||| |||||||||||||||||||||  ||| | |  || |||||    
T  42162604 ttatacatgaaccaccttaggtgtcatacacccttttacacccaaacacatttgtgacacgtgacaaaaacattgaaagaagagatgaaaaagggtgatg 42162703  T
Q  230 atgtgatgcaaaattactaaaatactcctaa 260  Q
    || ||||| ||||||||| |||||| |||||    
T  42162704 atatgatgtaaaattactcaaatacccctaa 42162734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 262
Target Start/End: Original strand, 36189222 - 36189354
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| ||||||||||||||| |||||| ||| ||||||||| | | |||||||| ||| |||||| ||||||||||  ||| | | ||  |||||    
T  36189222 ttatacatgaaccatcttaggtggcatacacccttttacacccacatacatttgtgacacgtggcaaaaatattgaaagaagagatgaaaaggagtgatg 36189321  T
Q  230 atgtgatgcaaaattactaaaatactcctaaca 262  Q
    || ||||  ||||||| |||||||| |||||||    
T  36189322 atatgatataaaattattaaaatacccctaaca 36189354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 260
Target Start/End: Original strand, 44081786 - 44081916
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| ||||||||||||||| |||||| ||| ||||||||||| | |||| ||| |||  ||||||||||||||||  ||| | |  || |||||    
T  44081786 ttatacatgaaccatcttaggtggcatacacccttttacacccacacacatttgtaacacgtggaaaaaacattgaaagaagagatgaaaaagggtgatg 44081885  T
Q  230 atgtgatgcaaaattactaaaatactcctaa 260  Q
    || | ||| ||||||||| |||||| |||||    
T  44081886 atataatgtaaaattactcaaatacccctaa 44081916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 31632 - 31552
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 210  Q
    ||||| ||| |||||||||||| || |||||  ||| ||||||||| | |||||||||||||| |||||||||||||||||    
T  31632 ttatatatgtaccatcttaggtagcatacacactttgacacccacatacaattgtgacatgtggcaaaaacattgaaagaa 31552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 42668951 - 42668886
Alignment:
Q  145 cttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 210  Q
    |||||||||| |||||  ||| ||||||||||| |||||||||| ||| |||||||||| ||||||    
T  42668951 cttaggtggcatacacactttgacacccacacacaattgtgacacgtggcaaaaacattaaaagaa 42668886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 262
Target Start/End: Original strand, 18184559 - 18184691
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||| ||| |||| |||| ||| | |||||| ||| ||| ||||||| | |||||||| |||   ||||||||||| |||  ||| | | ||| |||||    
T  18184559 ttatatatgaaccaccttaagtgacatacacccttttacatccacacatatttgtgacacgtggtgaaaacattgaatgaagagatgaaaaggggtgatg 18184658  T
Q  230 atgtgatgcaaaattactaaaatactcctaaca 262  Q
    || ||||  |||||||||||||||| |||||||    
T  18184659 atatgatataaaattactaaaatacccctaaca 18184691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 130 - 262
Target Start/End: Complemental strand, 1815801 - 1815669
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| ||||||||||||| | |||||| ||| ||| ||||||| | |||||||| ||| |||||||||||||||||  ||| | | ||| |||||    
T  1815801 ttatacatgaaccatcttaggtgacatacacccttttacatccacacatatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaggggtgatg 1815702  T
Q  230 atgtgatgcaaaattactaaaatactcctaaca 262  Q
    || ||||| |||||||||||||||| |||||||    
T  1815701 atatgatgtaaaattactaaaatacccctaaca 1815669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 130 - 260
Target Start/End: Original strand, 2237282 - 2237412
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| |||| |||||||| | |||||| ||| ||||||||||| | |||||||| ||| |||||||||||||||||  ||| | |  || |||||    
T  2237282 ttatacatgaaccaccttaggtgacatacacccttttacacccacacatatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgatg 2237381  T
Q  230 atgtgatgcaaaattactaaaatactcctaa 260  Q
    || ||||| ||||||||| |||||| |||||    
T  2237382 atatgatgtaaaattactcaaatacccctaa 2237412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 130 - 260
Target Start/End: Original strand, 39370933 - 39371063
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| |||| ||||| |||| |||||| ||| ||||||||||| | |||||||| ||| |||||||||||||||||  ||| | |  || |||||    
T  39370933 ttatacatgaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtgccaaaaacattgaaagaagagatgaaaaagggtgatg 39371032  T
Q  230 atgtgatgcaaaattactaaaatactcctaa 260  Q
    || ||||| ||||||||| |||||| |||||    
T  39371033 atatgatgtaaaattactcaaatacccctaa 39371063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 254
Target Start/End: Original strand, 17225325 - 17225447
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| ||||  ||||||||| ||| | |||  ||||||||||| | ||||||||||||||||||||||||||||||  ||| | | | | |||||    
T  17225325 ttatacatgaaccactttaggtggcatactctttt--acacccacacacatttgtgacatgtgacaaaaacattgaaagaagagatgaaaagaggtgatg 17225422  T
Q  230 atgtgatgcaaaattactaaaatac 254  Q
    ||||||||  |||||||||||||||    
T  17225423 atgtgatgtgaaattactaaaatac 17225447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 210
Target Start/End: Complemental strand, 19596253 - 19596172
Alignment:
Q  129 gttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 210  Q
    |||||||||| |||| |||||||||| |||||||||| ||| |||| || | |||||||||||| |||||||||||||||||    
T  19596253 gttatacatgaaccaccttaggtggcatacacctttttacatccacgcacatttgtgacatgtggcaaaaacattgaaagaa 19596172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 262
Target Start/End: Complemental strand, 27553558 - 27553426
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa-aggataagaggggatgat 228  Q
    ||||||||| ||||| ||||||||| || ||| ||| ||||||||||| | |||||||| ||| ||||||||||||||||| || | || |  || ||||    
T  27553558 ttatacatgaaccattttaggtggcatataccattttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagaagaaaaatgg-tgat 27553460  T
Q  229 gatgtgatgcaaaattactaaaatactcctaaca 262  Q
     || ||||| ||||||||||||||||||||||||    
T  27553459 tatctgatgtaaaattactaaaatactcctaaca 27553426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 13347134 - 13347214
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 210  Q
    ||||||||| |||| |||||||||| |||||| ||| ||||||||||| | |||||||| ||| |||||||||||||||||    
T  13347134 ttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaa 13347214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 309
Target Start/End: Original strand, 31800601 - 31800750
Alignment:
Q  167 acacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatgatgtgatgcaaaattactaaaatactcctaaca---- 262  Q
    ||||||||||| | || ||||| ||| |||||| ||||||||||| ||| | | ||| ||||||| ||||| |||||||||||||||| |||||||        
T  31800601 acacccacacacatttatgacacgtggcaaaaatattgaaagaaaagatgaaaaggggtgatgatatgatgtaaaattactaaaatacccctaacatatg 31800700  T
Q  263 --gtgtacacgagaggtgtat-aaaaaaggtatctttctatctttttcct 309  Q
      |||||||| |||||||||| ||||| ||| |||  |||||||||||||    
T  31800701 gggtgtacacaagaggtgtatgaaaaagggtgtctgcctatctttttcct 31800750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 254
Target Start/End: Complemental strand, 40888127 - 40888003
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||  |||| |||||||||| |||||  ||| ||||||||||| | |||||||| ||| |||||||||||||||||  ||| | |  || || ||    
T  40888127 ttatacataaaccaccttaggtggcatacactcttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtggtg 40888028  T
Q  230 atgtgatgcaaaattactaaaatac 254  Q
    || ||||| ||||||||||||||||    
T  40888027 atatgatgtaaaattactaaaatac 40888003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 260
Target Start/End: Original strand, 14831555 - 14831680
Alignment:
Q  135 catggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatgatgtg 234  Q
    |||| |||| |||||||||| |||||| ||| ||||||||||| | |||||| | ||| |||||||||||||||||  ||| | |  || ||||||| ||    
T  14831555 catgaaccaccttaggtggcatacacccttttacacccacacacatttgtgatacgtggcaaaaacattgaaagaagagatgaaaaagggtgatgatatg 14831654  T
Q  235 atgcaaaattactaaaatactcctaa 260  Q
    ||| ||||||| | |||||| |||||    
T  14831655 atgtaaaattattcaaatacccctaa 14831680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 254
Target Start/End: Complemental strand, 19124655 - 19124533
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    |||||||||||| ||||||| |||| ||||| ||| | |||||||||| ||||||||| |||| |||||||||| ||||||  ||| | ||    |||||    
T  19124655 ttatacatggactatcttagatggcatacacatttga-cacccacacacaattgtgacgtgtggcaaaaacatt-aaagaagagatgaaagaatgtgatg 19124558  T
Q  230 atgtgatgcaaaattactaaaatac 254  Q
    || ||||| ||||||||||||||||    
T  19124557 atatgatgtaaaattactaaaatac 19124533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 33404621 - 33404541
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 210  Q
    ||||||||| |||| |||||||| | |||||  ||| ||||||||||| | |||||||| ||| |||||||||||||||||    
T  33404621 ttatacatgaaccaccttaggtgccatacacacttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaa 33404541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 260
Target Start/End: Complemental strand, 9408224 - 9408094
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| |||| || ||||| | ||| || ||| |||| |||||| | |||||||| ||| |||||||||||||||||  ||| | |  || |||||    
T  9408224 ttatacatgaaccacctcaggtgacatacgcccttttacactcacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgatg 9408125  T
Q  230 atgtgatgcaaaattactaaaatactcctaa 260  Q
    || ||||| ||||||||| |||||| |||||    
T  9408124 atatgatgtaaaattactcaaatacccctaa 9408094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 199
Target Start/End: Original strand, 3725731 - 3725800
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaa 199  Q
    |||||||||||||| |||||||||| || ||  ||||||| ||||||| || ||||||||||| ||||||    
T  3725731 ttatacatggaccaccttaggtggcatatactctttaacaaccacacataagtgtgacatgtgccaaaaa 3725800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 250
Target Start/End: Complemental strand, 41004031 - 41003915
Alignment:
Q  133 tacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatgatg 232  Q
    |||||| ||||  ||||||||| |||||| ||| |||| || ||| | || ||||||||| |||||| ||||||| | |  |||| | ||||||||||||    
T  41004031 tacatgaaccactttaggtggcatacacccttttacactcatacacatttatgacatgtggcaaaaatattgaaaaagat-ataaaaagggatgatgatg 41003933  T
Q  233 tgatgcaaaattactaaa 250  Q
    ||||| ||||||||||||    
T  41003932 tgatgtaaaattactaaa 41003915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 12164257 - 12164337
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 210  Q
    ||||||||| |||||||||||||||  |||   ||||| || |||||| | ||||| |||||| |||||||||||||||||    
T  12164257 ttatacatgaaccatcttaggtggcacacattctttaatactcacacacagttgtggcatgtggcaaaaacattgaaagaa 12164337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 289
Target Start/End: Complemental strand, 4300728 - 4300563
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| ||||| ||||||| | || | | ||| ||||||||||| | ||||||||| || |||||||||||||| ||  ||||| |   | || ||    
T  4300728 ttatacatgaaccattttaggtgacatatatccttttacacccacacatatttgtgacatatggcaaaaacattgaaataagagataaaaaatggtggtg 4300629  T
Q  230 atgtgatgcaaaattactaaaatactcctaaca------gtgtacacgagaggtgtataaaaaagg 289  Q
    ||||||||  |||||| |||||||  |||||||      ||||||| ||||| |||||||||||||    
T  4300628 atgtgatgtgaaattattaaaatatccctaacacatgaggtgtacatgagagatgtataaaaaagg 4300563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 130 - 253
Target Start/End: Original strand, 38321015 - 38321138
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||  ||||||||||||||| ||||| |||||||||||||| | |||||||||||||| |||||||||||||||||   || ||||| | |||||    
T  38321015 ttatacattaaccatcttaggtggcatacacattttaacacccacatacaattgtgacatgtggcaaaaacattgaaagaagatatgagaggaggtgatg 38321114  T
Q  230 atgtgatgcaaaattactaaaata 253  Q
     |||||||  ||| ||||||||||    
T  38321115 gtgtgatgtgaaagtactaaaata 38321138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 309
Target Start/End: Original strand, 13108153 - 13108339
Alignment:
Q  129 gttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgat 228  Q
    |||||||||  |||| |||||| ||| |||||| ||| ||||||||||| | |||||||||||| ||||||| |||||||||  ||| | ||||| |||     
T  13108153 gttatacataaaccaccttaggcggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacgttgaaagaagagatgaaagggg-tgag 13108251  T
Q  229 gatgtgatgcaaaattactaaaatactcctaaca------gtgtacacgagaggtgtataaaaaa-ggtatctttctatctttttcct 309  Q
    |||||||||  ||||||||||||||| |||||||      ||||||| || |||||||||||||| ||| |||  |||||||||||||    
T  13108252 gatgtgatgtgaaattactaaaatacccctaacacatgaggtgtacatgaaaggtgtataaaaaagggtgtctacctatctttttcct 13108339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 262
Target Start/End: Original strand, 31148296 - 31148428
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| ||||||||||||||| |||||| ||| ||||||||||| | ||||||||  || |||||||||||||||||  ||| | |  || |||||    
T  31148296 ttatacatgaaccatcttaggtggcatacacccttttacacccacacacatttgtgacacatggcaaaaacattgaaagaagagatgaaaatgggtgatg 31148395  T
Q  230 atgtgatgcaaaattactaaaatactcctaaca 262  Q
    || ||||| |||||||||||||||  |||||||    
T  31148396 atatgatgtaaaattactaaaataagcctaaca 31148428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 130 - 309
Target Start/End: Complemental strand, 42221148 - 42220962
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| |||| |||||||||| ||||| |||| ||||||||||| | |||||||| ||| |||||||||||||||||   |||| | ||| |||||    
T  42221148 ttatacatgaaccaccttaggtggcatacacttttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagatataaaaaggggtgatg 42221049  T
Q  230 atgtgatgcaaaattact-aaaatactcctaac------agtgtacacgagaggtgtataaaaaaggtatctttctatctttttcct 309  Q
    || |||||  |||||||| ||||||| ||||||      ||||||||  || ||||||| |||||||| |||  |||||||||||||    
T  42221048 atatgatgttaaattactaaaaatacccctaacacatggagtgtacataagtggtgtatgaaaaaggtgtctacctatctttttcct 42220962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 254
Target Start/End: Original strand, 23980136 - 23980261
Alignment:
Q  129 gttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgat 228  Q
    |||||||||  |||| | |||||||| |||||| ||| ||||||||||| | |||||||||||| |||||||||||||||||  ||| | | ||| |||     
T  23980136 gttatacataaaccaccataggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaaggggtgag 23980235  T
Q  229 gatgtgatgcaaaattactaaaatac 254  Q
    |||||||||  |||||||||||||||    
T  23980236 gatgtgatgtgaaattactaaaatac 23980261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 310
Target Start/End: Complemental strand, 5811348 - 5811161
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||  |||| | |||||||| |||| | |||  |||||||||| | |||||||||||| |||||||||||||||||  ||| | | ||| ||| |    
T  5811348 ttatacataaaccaccataggtggcatacatcctttttcacccacacacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaaggggtgagg 5811249  T
Q  230 atgtgatgcaaaattactaaaatactcctaaca------gtgtacacgagaggtgtataaaaaa-ggtatctttctatctttttccta 310  Q
    ||||||||  ||||||||||||||| |||||||      ||||||| | ||||||||||||||| ||| |||  ||||||||||||||    
T  5811248 atgtgatgtgaaattactaaaatacccctaacacatgaggtgtacatgggaggtgtataaaaaagggtgtctacctatctttttccta 5811161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 254
Target Start/End: Complemental strand, 7700068 - 7699944
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||  |||| ||||| |||| |||||| ||| ||||||||||| | |||||||| ||| |||||||||||||||||  ||||| |  ||||||||    
T  7700068 ttatacataaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagataaaaaaggatgatg 7699969  T
Q  230 atgtgatgcaaaattactaaaatac 254  Q
    || ||||  ||||||||||||||||    
T  7699968 atatgatataaaattactaaaatac 7699944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 254
Target Start/End: Complemental strand, 7700266 - 7700142
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||  |||| ||||| |||| |||||| ||| ||||||||||| | |||||||| ||| |||||||||||||||||  ||||| |  ||||||||    
T  7700266 ttatacataaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagataaaaaaggatgatg 7700167  T
Q  230 atgtgatgcaaaattactaaaatac 254  Q
    || ||||  ||||||||||||||||    
T  7700166 atatgatataaaattactaaaatac 7700142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 254
Target Start/End: Complemental strand, 7700464 - 7700340
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||  |||| ||||| |||| |||||| ||| ||||||||||| | |||||||| ||| |||||||||||||||||  ||||| |  ||||||||    
T  7700464 ttatacataaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagataaaaaaggatgatg 7700365  T
Q  230 atgtgatgcaaaattactaaaatac 254  Q
    || ||||  ||||||||||||||||    
T  7700364 atatgatataaaattactaaaatac 7700340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 254
Target Start/End: Complemental strand, 7700662 - 7700538
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||  |||| ||||| |||| |||||| ||| ||||||||||| | |||||||| ||| |||||||||||||||||  ||||| |  ||||||||    
T  7700662 ttatacataaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagataaaaaaggatgatg 7700563  T
Q  230 atgtgatgcaaaattactaaaatac 254  Q
    || ||||  ||||||||||||||||    
T  7700562 atatgatataaaattactaaaatac 7700538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 262
Target Start/End: Complemental strand, 21807507 - 21807375
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| |||| ||||| |||| |||||| ||| ||||||||||| | |||||| ||||| |||||| ||||||||||  ||| | |  ||||||||    
T  21807507 ttatacatgaaccaccttagatggcatacaccattttacacccacacaaatttgtgatatgtggcaaaaatattgaaagaagagatgaaaatggatgatg 21807408  T
Q  230 atgtgatgcaaaattactaaaatactcctaaca 262  Q
    |||| |||  ||||||||||||||| |||||||    
T  21807407 atgttatgtgaaattactaaaatacccctaaca 21807375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 262
Target Start/End: Complemental strand, 36346749 - 36346618
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||  ||||||||||||||| |||||| ||| ||||||| ||| | |||||||| ||| |||||||||||||||||  ||| | |  || |||||    
T  36346749 ttatacataaaccatcttaggtggcatacacccttttacacccagacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagg-tgatg 36346651  T
Q  230 atgtgatgcaaaattactaaaatactcctaaca 262  Q
    || ||||| |||||||||||||||| |||||||    
T  36346650 atatgatgtaaaattactaaaatacccctaaca 36346618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 146 - 262
Target Start/End: Complemental strand, 45782829 - 45782713
Alignment:
Q  146 ttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatgatgtgatgcaaaatta 245  Q
    ||||||||| |||| | ||| ||||||||||| | |||||||| |||||||||||||||||||||  ||| | |  || ||||||| ||||| |||||||    
T  45782829 ttaggtggcatacatcattttacacccacacacatttgtgacacgtgacaaaaacattgaaagaagagatgaaaaagggtgatgatatgatgtaaaatta 45782730  T
Q  246 ctaaaatactcctaaca 262  Q
    ||||||||| |||||||    
T  45782729 ctaaaatacccctaaca 45782713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 130 - 260
Target Start/End: Original strand, 34108432 - 34108562
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| |||| |||||||| | |||||| ||| ||||||||||| | ||||||||| |||||||||||||||| |||  ||| | |  || |||||    
T  34108432 ttatacatgaaccaccttaggtgacatacacccttttacacccacacatatttgtgacatatgacaaaaacattgaatgaagagatgaaaaagggtgatg 34108531  T
Q  230 atgtgatgcaaaattactaaaatactcctaa 260  Q
    || ||||| ||||||||| |||||| |||||    
T  34108532 atatgatgtaaaattactcaaatacccctaa 34108562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 260
Target Start/End: Complemental strand, 26972388 - 26972258
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| |||| |||||||||| |||||| ||| ||||||||||| | || ||||| ||| ||||||||||||||| |  ||| | |  || |||||    
T  26972388 ttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttatgacacgtggcaaaaacattgaaaggagagatgaaaaagggtgatg 26972289  T
Q  230 atgtgatgcaaaattactaaaatactcctaa 260  Q
    || ||||| ||||||||| |||||| |||||    
T  26972288 atatgatgtaaaattactcaaatacccctaa 26972258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 145 - 254
Target Start/End: Complemental strand, 28307665 - 28307556
Alignment:
Q  145 cttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatgatgtgatgcaaaatt 244  Q
    |||||||||| |||||| ||| ||||||||||| | ||| |||| ||| |||||||||||||||||  ||| | |  || ||||||| ||||| ||||||    
T  28307665 cttaggtggcatacacccttttacacccacacacatttgcgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgatgatatgatgtaaaatt 28307566  T
Q  245 actaaaatac 254  Q
    ||||||||||    
T  28307565 actaaaatac 28307556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 262
Target Start/End: Original strand, 34828072 - 34828203
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| |||| ||| |||| | |||| | ||| ||| ||||||| | |||||||| ||| |||||||||||||||||  ||| | | | |||||||    
T  34828072 ttatacatgaaccaccttgggtg-catacatccttttacatccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaagtgatgatg 34828170  T
Q  230 atgtgatgcaaaattactaaaatactcctaaca 262  Q
    || ||||| |||||||||||||||| |||||||    
T  34828171 atatgatgtaaaattactaaaatacccctaaca 34828203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 167 - 312
Target Start/End: Original strand, 46475067 - 46475220
Alignment:
Q  167 acacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatgatgtgatgcaaaattactaaaatactcc-taaca--- 262  Q
    ||||||| ||| | ||||||||||| ||||||||||||||||||  ||| | | ||| ||| |||||||||  ||||||||||||||| || |||||       
T  46475067 acacccatacacatttgtgacatgtaacaaaaacattgaaagaagagatgaaaaggggtgacgatgtgatgtgaaattactaaaataccccataacacat 46475166  T
Q  263 ---gtgtacacgagaggtgtataaaaaa-ggtatctttctatctttttcctata 312  Q
        |||||| ||||||||||||||||| ||| |||  ||||||||||||||||    
T  46475167 gagatgtacatgagaggtgtataaaaaagggtgtctacctatctttttcctata 46475220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 254
Target Start/End: Original strand, 36957447 - 36957559
Alignment:
Q  142 catcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatgatgtgatgcaaa 241  Q
    ||||||||||||| |||||| ||| ||| ||| ||| | |||||||| |||||||||| |||| |||||  ||| | |  ||||||| |||| ||| |||    
T  36957447 catcttaggtggcatacacccttttacatccatacatatttgtgacacgtgacaaaaatattgtaagaagagatgaaaatggatgataatgtaatgtaaa 36957546  T
Q  242 attactaaaatac 254  Q
    |||||||||||||    
T  36957547 attactaaaatac 36957559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 254
Target Start/End: Original strand, 30887706 - 30887830
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| || |||||||||||| |||||  ||| ||||||||| | | |||||||| ||  ||||||||||||| |||  ||| | |  || |||||    
T  30887706 ttatacatgaacaatcttaggtggcatacacacttttacacccacatacatttgtgacacgtagcaaaaacattgaatgaagagatgaaaaagggtgatg 30887805  T
Q  230 atgtgatgcaaaattactaaaatac 254  Q
    || ||||| ||||||||| ||||||    
T  30887806 atatgatgtaaaattacttaaatac 30887830  T

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Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 253
Target Start/End: Complemental strand, 20086776 - 20086690
Alignment:
Q  167 acacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatgatgtgatgcaaaattactaaaata 253  Q
    ||||||||| | | ||| ||||| || |||||||||| ||||||  ||||| | ||| |||||||||||||  ||||||||||||||    
T  20086776 acacccacatacatttgagacatctggcaaaaacattaaaagaagagataaaaaggggtgatgatgtgatgtgaaattactaaaata 20086690  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 130 - 289
Target Start/End: Complemental strand, 19258857 - 19258692
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||  ||||||| ||||||| |||||||||| ||||||||| | | |||||||||||| |||||||||||||| ||  ||| | | ||| || ||    
T  19258857 ttatacataaaccatctaaggtggcatacacctttttacacccacatatatttgtgacatgtggcaaaaacattgaaaaaagagatgaaaaggggtggtg 19258758  T
Q  230 atgtgatgcaaaattactaaaatactcctaaca------gtgtacacgagaggtgtataaaaaagg 289  Q
    ||||||||  |||||| ||||||| ||||||||      ||||||| ||||| |||||||||||||    
T  19258757 atgtgatgtgaaattattaaaatattcctaacacatggggtgtacatgagagatgtataaaaaagg 19258692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 130 - 260
Target Start/End: Complemental strand, 39250048 - 39249918
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| ||||||||||||||| |||||| ||| ||||||| ||| | |||||||| ||| |||||||||||||||||  ||| | |  ||||| ||    
T  39250048 ttatacatgaaccatcttaggtggcatacacccttttacacccatacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaaggatggtg 39249949  T
Q  230 atgtgatgcaaaattactaaaatactcctaa 260  Q
    || | ||| |||||||||||||||| |||||    
T  39249948 atataatgtaaaattactaaaatacccctaa 39249918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 10146972 - 10147049
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaa 207  Q
    |||||||||||||| |||||||||| |||||| ||| || |||||||| |||||||||||||| |||||||| |||||    
T  10146972 ttatacatggaccaccttaggtggcatacaccctttgacccccacacacaattgtgacatgtggcaaaaacagtgaaa 10147049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 309
Target Start/End: Complemental strand, 34307323 - 34307136
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||  |||| |||||||||| |||||| ||| ||| ||||||| | |||||||| ||| |||||||||||||||||   || | |  || |||||    
T  34307323 ttatacataaaccaccttaggtggcatacacccttttacatccacacacatttgtgacacgtggcaaaaacattgaaagaagatatgaaaaagggtgatg 34307224  T
Q  230 atgtgatgcaaaattactaaaatactcctaac-------agtgtacacgagaggtgtat-aaaaaaggtatctttctatctttttcct 309  Q
    || ||||| |||||||||||||||| ||||||       ||||||||  |||||||||| ||||||||| |||  |||||||||||||    
T  34307223 atatgatgtaaaattactaaaatacccctaacacatgggagtgtacataagaggtgtatgaaaaaaggtgtctacctatctttttcct 34307136  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 48275253 - 48275343
Alignment:
Q  14 gaatgagggtgtaatggaaactaataaagattgatctaaatcttg--------aatataaaat-aaaaaaccctgataaatctcctctagg 95  Q
    ||||||||||| |||||||||||||||||||||||||||||||||        |||||||||| |||||||||| ||||||||||||||||    
T  48275253 gaatgagggtggaatggaaactaataaagattgatctaaatcttgtatattgaaatataaaataaaaaaacccttataaatctcctctagg 48275343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 145 - 251
Target Start/End: Complemental strand, 9643036 - 9642929
Alignment:
Q  145 cttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataag-aggggatgatgatgtgatgcaaaat 243  Q
    ||||| |||| || ||||||||||||||||||| ||||||||||  ||||||||||| ||||||||  ||| || ||||| ||||||| |||||  ||||    
T  9643036 cttagatggcatataccttttaacacccacacataattgtgacacatgacaaaaacaatgaaagaagagatgagaagggggtgatgatatgatgtgaaat 9642937  T
Q  244 tactaaaa 251  Q
    ||||||||    
T  9642936 tactaaaa 9642929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 262
Target Start/End: Original strand, 28647359 - 28647491
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| |||| || |||| || |||| ||||| ||||||||||| | |||||| || || |||||||||||||||||  ||| | | ||| || ||    
T  28647359 ttatacatgaaccacctaaggttgcatacatctttttacacccacacatatttgtgatatttggcaaaaacattgaaagaatagatgaaaaggggtggtg 28647458  T
Q  230 atgtgatgcaaaattactaaaatactcctaaca 262  Q
    ||||||||  |||||| ||||||| ||||||||    
T  28647459 atgtgatgtgaaattattaaaatattcctaaca 28647491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 253
Target Start/End: Original strand, 2509030 - 2509153
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| |||| |||||||| | |||| | ||| ||||||||||| | |||||||| ||| |||||||||||||||||  ||| | |  || || ||    
T  2509030 ttatacatgaaccaccttaggtgacatacatccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtggtg 2509129  T
Q  230 atgtgatgcaaaattactaaaata 253  Q
    || ||||| |||||||||||||||    
T  2509130 atatgatgtaaaattactaaaata 2509153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 207
Target Start/End: Complemental strand, 8848989 - 8848961
Alignment:
Q  179 aattgtgacatgtgacaaaaacattgaaa 207  Q
    |||||||||||||||||||||||||||||    
T  8848989 aattgtgacatgtgacaaaaacattgaaa 8848961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 29099863 - 29099899
Alignment:
Q  171 ccacacagaattgtgacatgtgacaaaaacattgaaa 207  Q
    ||||||| | |||||||||||||||||||||||||||    
T  29099863 ccacacacatttgtgacatgtgacaaaaacattgaaa 29099899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 253
Target Start/End: Original strand, 6724 - 6847
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggatgatg 229  Q
    ||||||||| |||| |||||||||| |||||| ||| ||||||||||| | |||||||| ||| |||||||||||||||||  ||| | |  || |||||    
T  6724 ttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgatg 6823  T
Q  230 atgtgatgcaaaattactaaaata 253  Q
    || ||||| ||||||||| |||||    
T  6824 atatgatgtaaaattacttaaata 6847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 87348 - 87269
Alignment:
Q  130 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 210  Q
    ||||||||| |||| |||||||||| |||||| ||  ||||| ||||| | |||||||| ||| |||||||||||||||||    
T  87348 ttatacatgaaccaccttaggtggcatacacccttgtacacc-acacacatttgtgacacgtggcaaaaacattgaaagaa 87269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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