View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10344_9 (Length: 306)

Name: NF10344_9
Description: NF10344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10344_9
NF10344_9
[»] chr3 (11 HSPs)
chr3 (105-272)||(4781162-4781327)
chr3 (106-272)||(4776532-4776696)
chr3 (120-272)||(4771804-4771954)
chr3 (131-272)||(3257786-3257927)
chr3 (155-269)||(32201992-32202107)
chr3 (131-272)||(3256570-3256712)
chr3 (156-270)||(33798264-33798380)
chr3 (156-256)||(16217346-16217446)
chr3 (131-257)||(3285322-3285449)
chr3 (183-272)||(3404164-3404254)
chr3 (172-272)||(3388484-3388585)
[»] chr4 (9 HSPs)
chr4 (106-265)||(7703203-7703363)
chr4 (108-256)||(11488459-11488607)
chr4 (130-269)||(8913117-8913257)
chr4 (201-269)||(30064930-30064998)
chr4 (130-273)||(41953566-41953711)
chr4 (138-273)||(20572200-20572336)
chr4 (156-268)||(21799028-21799143)
chr4 (140-273)||(51462266-51462399)
chr4 (105-181)||(19940193-19940268)
[»] chr5 (4 HSPs)
chr5 (1-100)||(8682744-8682843)
chr5 (138-265)||(24884282-24884409)
chr5 (130-259)||(13808125-13808256)
chr5 (141-216)||(16511852-16511929)
[»] chr7 (10 HSPs)
chr7 (156-266)||(5048480-5048590)
chr7 (105-257)||(40504470-40504623)
chr7 (106-273)||(16254013-16254181)
chr7 (138-267)||(7229334-7229465)
chr7 (156-246)||(16300354-16300444)
chr7 (146-211)||(20176345-20176410)
chr7 (106-164)||(16299584-16299642)
chr7 (138-188)||(19589834-19589884)
chr7 (138-183)||(2475814-2475859)
chr7 (233-272)||(18398133-18398173)
[»] chr2 (8 HSPs)
chr2 (155-268)||(5370754-5370869)
chr2 (105-255)||(30972913-30973063)
chr2 (138-245)||(24576705-24576813)
chr2 (140-273)||(33855131-33855265)
chr2 (105-211)||(16341478-16341583)
chr2 (135-196)||(25894209-25894270)
chr2 (107-164)||(17270469-17270526)
chr2 (105-207)||(13232016-13232118)
[»] chr6 (2 HSPs)
chr6 (125-273)||(21671024-21671172)
chr6 (125-273)||(21678440-21678588)
[»] chr8 (2 HSPs)
chr8 (132-238)||(15257383-15257488)
chr8 (129-201)||(25234454-25234526)
[»] chr1 (3 HSPs)
chr1 (138-273)||(19882278-19882409)
chr1 (134-183)||(15245068-15245117)
chr1 (138-183)||(33079573-33079618)


Alignment Details
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 105 - 272
Target Start/End: Complemental strand, 4781327 - 4781162
Alignment:
Q  105 ctgtggagttatagtttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtt 204  Q
    |||||||| || || | ||||||| ||||||||||||||| ||||| ||||||  |||||||||| ||||||||||||||||||||||||||||||||||    
T  4781327 ctgtggagctaaagctacgcgtagattttcagcagaaaacttgtttacataaa--taaaataaatcatttgtcacaacagtaaatataaaaggttaagtt 4781230  T
Q  205 tgggaaagcagtaaaaggttttagaaaatctcaagatggaaagtgtggtttaaactaggttcagttat 272  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  4781229 tgggaaagcagtaaaaggttttagaaaatctaaagatggaaagtctggtttaaactaggttcagttat 4781162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 106 - 272
Target Start/End: Complemental strand, 4776696 - 4776532
Alignment:
Q  106 tgtggagttatagtttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagttt 205  Q
    ||||||| || || |||| |||| | ||||| ||||||| ||||| ||||||  |||||| ||| |||||||||||||||||||||||||| ||||||||    
T  4776696 tgtggagctaaagcttcgtgtagctgttcagtagaaaacatgtttacataaa--taaaatgaatcatttgtcacaacagtaaatataaaagattaagttt 4776599  T
Q  206 gggaaagcagtaaaaggttttagaaaatctcaagatggaaagtgtggtttaaactaggttcagttat 272  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  4776598 gggaaagcagtaaaaggttttagaaaatctcaagatggaaagtctggtttaaactaggtccagttat 4776532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 120 - 272
Target Start/End: Complemental strand, 4771954 - 4771804
Alignment:
Q  120 ttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagtaaa 219  Q
    |||| |||| ||||||| ||||||| ||||| ||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4771954 ttcgagtagcttttcagtagaaaacttgtttacataaa--taaaataaatcatttgtcacaacagtaaatataaaaggttaagtttgggaaagaagtaaa 4771857  T
Q  220 aggttttagaaaatctcaagatggaaagtgtggtttaaactaggttcagttat 272  Q
    |||||||||||||||||||||||||||||  |||||||| ||||||| |||||    
T  4771856 aggttttagaaaatctcaagatggaaagtacggtttaaattaggttcggttat 4771804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 131 - 272
Target Start/End: Complemental strand, 3257927 - 3257786
Alignment:
Q  131 tttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagtaaaaggttttagaa 230  Q
    |||||||||||||| ||||||||  ||||| ||||||||  |||||| ||| ||||||||||||| ||||||||| |||||  ||| ||| | |||||||    
T  3257927 tttcagcagaaaacatgtttgcaggaaaatcaaataaatattttgtcgcaatagtaaatataaaatgttaagttttggaaaatagttaaaaggtttagaa 3257828  T
Q  231 aatctcaagatggaaagtgtggtttaaactaggttcagttat 272  Q
    | ||| ||||||||||||||||||||| ||||| ||||||||    
T  3257827 attcttaagatggaaagtgtggtttaagctaggctcagttat 3257786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 269
Target Start/End: Original strand, 32201992 - 32202107
Alignment:
Q  155 aaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagtaaaaggttttagaaaatctcaagatggaaagtgtggtt 254  Q
    ||||||||||||||| ||||||| ||||||||||  ||||| ||| ||||| |||||||||| ||||  |||||||||||||||||||||| ||||||||    
T  32201992 aaaaataaaataaatcatttgtcgcaacagtaaaattaaaaagtttagtttaggaaagcagttaaagtctttagaaaatctcaagatggaaggtgtggtt 32202091  T
Q  255 ta-aactaggttcagt 269  Q
    || ||| |||||||||    
T  32202092 tagaacaaggttcagt 32202107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 131 - 272
Target Start/End: Complemental strand, 3256712 - 3256570
Alignment:
Q  131 tttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcag-taaaaggttttaga 229  Q
    ||||| || ||||| ||||||||  ||||| ||||||||  |||| |||||| |||||| ||||||||||||||| ||||| ||| ||||| | ||||||    
T  3256712 tttcaacataaaacttgtttgcaagaaaatcaaataaatcttttgccacaacggtaaatctaaaaggttaagttttggaaaacagttaaaatgatttaga 3256613  T
Q  230 aaatctcaagatggaaagtgtggtttaaactaggttcagttat 272  Q
    || |||  |||||||||||||||||||| ||||||||||||||    
T  3256612 aattctttagatggaaagtgtggtttaagctaggttcagttat 3256570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 156 - 270
Target Start/End: Complemental strand, 33798380 - 33798264
Alignment:
Q  156 aaaataaaataaattatttgtcacaacagtaaatataaaaggttaa-gtttgggaaagcagt--aaaaggttttagaaaatctcaagatggaaagtgtgg 252  Q
    |||||||||||||| |||||||||||||  |||||||||| ||||| | |||||||| || |  ||||||||| ||||| |||||||||||||| |||||    
T  33798380 aaaataaaataaatcatttgtcacaacaacaaatataaaaagttaaaggttgggaaaacaatttaaaaggttt-agaaattctcaagatggaaaatgtgg 33798282  T
Q  253 tttaaactaggttcagtt 270  Q
    ||||||||||||||||||    
T  33798281 tttaaactaggttcagtt 33798264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 156 - 256
Target Start/End: Original strand, 16217346 - 16217446
Alignment:
Q  156 aaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagtaaaaggttttagaaaatctcaagatggaaagtgtggttt 255  Q
    ||||||||||||| ||||| |||||||||||||  | ||| ||||| |||||||||||||| ||||  |||||||||||||||||||||| ||| |||||    
T  16217346 aaaataaaataaaatatttttcacaacagtaaaagtgaaaagttaaatttgggaaagcagttaaagtctttagaaaatctcaagatggaaggtgcggttt 16217445  T
Q  256 a 256  Q
    |    
T  16217446 a 16217446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 131 - 257
Target Start/End: Complemental strand, 3285449 - 3285322
Alignment:
Q  131 tttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcag-taaaaggttttaga 229  Q
    |||||||| ||||| |||||| |  ||||| ||||||||  |||||  ||| ||||||||||||||||||||||| ||||| ||| ||||| | ||||||    
T  3285449 tttcagcataaaacttgtttgtaggaaaatcaaataaatcttttgttgcaatagtaaatataaaaggttaagttttggaaaacagttaaaaagatttaga 3285350  T
Q  230 aaatctcaagatggaaagtgtggtttaa 257  Q
    || ||| |||||||||||||||||||||    
T  3285349 aattcttaagatggaaagtgtggtttaa 3285322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 183 - 272
Target Start/End: Complemental strand, 3404254 - 3404164
Alignment:
Q  183 agtaaatataaaaggttaagtttgggaaagcagt-aaaaggttttagaaaatctcaagatggaaagtgtggtttaaactaggttcagttat 272  Q
    |||||||||||||||||| |||| ||||| |||| |||| | |||| ||| |||||||||| |||||||||||||||||| ||||||||||    
T  3404254 agtaaatataaaaggttatgttttggaaaacagttaaaaagatttacaaattctcaagatgaaaagtgtggtttaaactaagttcagttat 3404164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 272
Target Start/End: Complemental strand, 3388585 - 3388484
Alignment:
Q  172 tttgtcacaacagtaaatataaaaggttaagtttgggaaagcagt-aaaaggttttagaaaatctcaagatggaaagtgtggtttaaactaggttcagtt 270  Q
    |||||||||||||||||| ||| |||||| |||| ||||| |||| |||| | |||| ||| |||||||||| |||||||||||||||||| ||||| ||    
T  3388585 tttgtcacaacagtaaatctaataggttatgttttggaaaacagttaaaaagatttacaaattctcaagatgaaaagtgtggtttaaactaagttcaatt 3388486  T
Q  271 at 272  Q
    ||    
T  3388485 at 3388484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 106 - 265
Target Start/End: Complemental strand, 7703363 - 7703203
Alignment:
Q  106 tgtggagttatagtttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaa-ggttaagtt 204  Q
    ||||||| ||||| |||| |||| ||||||| ||||| | |||||| |  |||||||||||| | ||||||||||||||||||||||||| |||||||||    
T  7703363 tgtggagctatagcttcgtgtagcttttcaggagaaagcttgtttgtacgaaaataaaataagtcatttgtcacaacagtaaatataaaaaggttaagtt 7703264  T
Q  205 tgggaaagcagtaaaaggttttagaaaatctcaagatggaaagtgtggtttaaactaggtt 265  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  7703263 tgggaaaccagtaaaaggttttagaaaatctcaagatggaaattgtgttttaaactaggtt 7703203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 108 - 256
Target Start/End: Original strand, 11488459 - 11488607
Alignment:
Q  108 tggagttatagtttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgg 207  Q
    ||||| ||||| ||||||||  |||| |||| ||||| |||||| | ||||||||||||||  |||||| |||||| |||| ||||||||||||||||||    
T  11488459 tggagctatagcttcgcgtacctttttagcaaaaaacttgtttgtagaaaaataaaataaaacatttgttacaacaataaacataaaaggttaagtttgg 11488558  T
Q  208 gaaagcagtaaaaggttttagaaaatctcaagatggaaagtgtggttta 256  Q
    ||||| ||| ||||    | |||||||||||||||||||| ||||||||    
T  11488559 gaaagaagttaaagtccatcgaaaatctcaagatggaaagcgtggttta 11488607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 269
Target Start/End: Complemental strand, 8913257 - 8913117
Alignment:
Q  130 ttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagtaaaaggttttaga 229  Q
    ||||||||||||||| ||| ||   || |||||||||||  ||||||| ||| ||||||  ||||| |||||| || |||||||||| ||||   |||||    
T  8913257 ttttcagcagaaaacttgtgtggtgaagaataaaataaaacatttgtcgcaatagtaaaagtaaaaagttaagcttaggaaagcagttaaagtccttaga 8913158  T
Q  230 aaatctcaagatggaaagtgtggttta-aactaggttcagt 269  Q
    |||||||||||||||| |||||||||| ||| |||||||||    
T  8913157 aaatctcaagatggaaggtgtggtttagaacaaggttcagt 8913117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 30064930 - 30064998
Alignment:
Q  201 agtttgggaaagcagtaaaaggttttagaaaatctcaagatggaaagtgtggtttaaactaggttcagt 269  Q
    ||||||| ||| |||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||    
T  30064930 agtttggaaaaacagtaaaaagttttaaaaaatctcaagattgaaagtgtggtttaaactaggttcagt 30064998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 130 - 273
Target Start/End: Original strand, 41953566 - 41953711
Alignment:
Q  130 ttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagtaaa--aggtttta 227  Q
    ||||||| ||||||| | ||||||  |||||||||||||| |||||||||||||||||||||||||| | |||  |||||||||| | ||     |||||    
T  41953566 ttttcagtagaaaacttatttgcaagaaaataaaataaatcatttgtcacaacagtaaatataaaagttaaaggctgggaaagcaattaattttttttta 41953665  T
Q  228 gaaaatctcaagatggaaagtgtggtttaaactaggttcagttatg 273  Q
    || | ||||||  || |||||||||||||||||| ||| |||||||    
T  41953666 gatattctcaaagtgaaaagtgtggtttaaactaagtttagttatg 41953711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 273
Target Start/End: Complemental strand, 20572336 - 20572200
Alignment:
Q  138 agaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagc-agtaaaaggttttagaaaatctc 236  Q
    ||||||| ||||||||  |||||||||||||| |||||||||||| ||||||||||||| | |||  ||| ||| | | ||||| | |||||||| | ||    
T  20572336 agaaaacttgtttgcaagaaaataaaataaatcatttgtcacaaccgtaaatataaaagttgaaggctggaaaaacaattaaaacgatttagaaattatc 20572237  T
Q  237 aagatggaaagtgtggtttaaactaggttcagttatg 273  Q
    ||  || |||||||||||||||||| ||| |||||||    
T  20572236 aaagtgaaaagtgtggtttaaactatgttaagttatg 20572200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 268
Target Start/End: Complemental strand, 21799143 - 21799028
Alignment:
Q  156 aaaataaaataaattatttgtcacaacagtaaatataaaaggtt-aagtttggg--aaagcagtaaaaggttttagaaaatctcaagatggaaagtgtgg 252  Q
    |||||||||||||| ||||||||||| ||||||||||||| ||| ||| |||||  ||| |||| |||    ||||||| |||||||||| |||||||||    
T  21799143 aaaataaaataaatcatttgtcacaatagtaaatataaaaagttaaaggttggggaaaaacagtgaaaaagattagaaattctcaagatgaaaagtgtgg 21799044  T
Q  253 tttaaactaggttcag 268  Q
    ||||||||| ||||||    
T  21799043 tttaaactacgttcag 21799028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 140 - 273
Target Start/End: Complemental strand, 51462399 - 51462266
Alignment:
Q  140 aaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagtaaaaggttttagaaaatctcaag 239  Q
    ||||| |||||||| ||||||||||||||| || | |||| |||||||||||||||| | ||| |||| |||    ||||| | |||||| | ||||||     
T  51462399 aaaacttgtttgcaaaaaaataaaataaatcatctatcacgacagtaaatataaaagttaaaggttggaaaaattttaaaaagatttagatattctcaac 51462300  T
Q  240 atggaaagtgtggtttaaactaggttcagttatg 273  Q
     || |||||||||||||||||| ||||| |||||    
T  51462299 gtgaaaagtgtggtttaaactaagttcaattatg 51462266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 19940193 - 19940268
Alignment:
Q  105 ctgtggagttatagtttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaa 181  Q
    |||||||| ||||| |||   ||||||||||| ||||||| ||||| || ||||||||||||||| |||||||||||    
T  19940193 ctgtggagctatagcttcctatagtttttcagtagaaaacttgtttaca-aaaaataaaataaatcatttgtcacaa 19940268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 8682744 - 8682843
Alignment:
Q  1 gtgatgacaacaaaacggccaatgaaggcggtggtaaaaatgcaggtggtggcacaaaagtagaggaagtgaagccagcaccacagccagtgaacgagca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  8682744 gtgatgacaacaaaacggccaatgaaggcggtggtaaaaatgcaggtggtggctcaaaagtagaggaagtgaagccagcaccacagccagtgaaagagca 8682843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 138 - 265
Target Start/End: Original strand, 24884282 - 24884409
Alignment:
Q  138 agaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagtaaaaggttttagaaaatctca 237  Q
    ||||||| | |||| | ||||||||||||||| ||||||||||||| ||||  |||||| |||||||| |||||||||| ||||  ||||||||||||||    
T  24884282 agaaaacttatttggagaaaaataaaataaataatttgtcacaacaataaaagtaaaag-ttaagtttaggaaagcagttaaagtctttagaaaatctca 24884380  T
Q  238 agatggaaagtgtggttta-aactaggtt 265  Q
    ||||||||  ||||||||| |||||||||    
T  24884381 agatggaagatgtggtttagaactaggtt 24884409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 130 - 259
Target Start/End: Original strand, 13808125 - 13808256
Alignment:
Q  130 ttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaa-tataaaaggttaagtttgggaaagcag-taaaaggtttta 227  Q
    ||||||| ||||||| ||||||||  |||||||||||||| ||||||||||||| |||| |||||||| ||||||||||||||  || ||||| | | ||    
T  13808125 ttttcagtagaaaacttgtttgcaacaaaataaaataaatcatttgtcacaacactaaagtataaaagtttaagtttgggaaaatagttaaaatgatcta 13808224  T
Q  228 gaaaatctcaagatggaaagtgtggtttaaac 259  Q
    |||| |||||| |||||||| |||||||||||    
T  13808225 gaaattctcaacatggaaagcgtggtttaaac 13808256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 16511929 - 16511852
Alignment:
Q  141 aaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaa--gtttgggaaagcagt 216  Q
    |||| ||||||||  |||||||||||||| ||||||||||||| |||| |||||| |||||  |||||||||| ||||    
T  16511929 aaacttgtttgcaagaaaataaaataaatcatttgtcacaacaataaaaataaaaagttaaaggtttgggaaaacagt 16511852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 156 - 266
Target Start/End: Original strand, 5048480 - 5048590
Alignment:
Q  156 aaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagtaaaaggttttagaaaatctcaagatggaaagtgtggttt 255  Q
    |||||||||||||| | |||| |||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||| | ||||||||||||    
T  5048480 aaaataaaataaatcacttgttacaacagtaaatataaaaggttgagtttgggaaagcaataaaaggttttaaaaaatctcaagaggtaaagtgtggttt 5048579  T
Q  256 aaactaggttc 266  Q
    |||||||||||    
T  5048580 aaactaggttc 5048590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 105 - 257
Target Start/End: Original strand, 40504470 - 40504623
Alignment:
Q  105 ctgtggagttatagtttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaag-t 203  Q
    |||||||| ||||| ||||| ||| ||||||||||||||| |||||| |  |||||||||||||  ||||||||||||| ||||  |||||||||||| |    
T  40504470 ctgtggagctatagcttcgcatagcttttcagcagaaaacttgtttgtaagaaaataaaataaaacatttgtcacaacaataaaagtaaaaggttaagtt 40504569  T
Q  204 ttgggaaagcagtaaaaggttttagaaaatctcaagatggaaagtgtggtttaa 257  Q
    |||||||| |||    ||  ||||||||||||||||||| ||||||||||||||    
T  40504570 ttgggaaaacagctgcagtctttagaaaatctcaagatgaaaagtgtggtttaa 40504623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 106 - 273
Target Start/End: Complemental strand, 16254181 - 16254013
Alignment:
Q  106 tgtggagttatagtttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagttt 205  Q
    ||||||| ||||| |  |||||| |||||| | |||||| ||||||   |||||||||||||| |||||||||||||| ||||  |||||||||||||||    
T  16254181 tgtggagctatagctctgcgtagcttttcaacggaaaacttgtttggtaaaaaataaaataaaatatttgtcacaacattaaaagtaaaaggttaagttt 16254082  T
Q  206 gggaaagcagtaaaaggttttagaaaatctcaagatggaaagtgtggttta-aactaggttcagttatg 273  Q
     |||| ||||| ||||  ||||||||||||||||||| ||| ||| ||||| | |||||||||| ||||    
T  16254081 cggaatgcagttaaagtctttagaaaatctcaagatgaaaattgtagtttagatctaggttcagctatg 16254013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 267
Target Start/End: Complemental strand, 7229465 - 7229334
Alignment:
Q  138 agaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggtt-aagtttgggaaagc-agtaaaaggttttagaaaatct 235  Q
    ||||||| ||||| ||  |||||||||||||| ||||||||||||||||||||||||| ||| ||| |||||||| | | ||||| |  ||||||| |||    
T  7229465 agaaaacttgtttccaagaaaataaaataaatcatttgtcacaacagtaaatataaaaagttaaaggttgggaaaacaattaaaaagacttagaaattct 7229366  T
Q  236 caagatggaaagtgtggtttaaactaggttca 267  Q
    |||| |  |||||||||||||||||| |||||    
T  7229365 caaggtaaaaagtgtggtttaaactaagttca 7229334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 16300354 - 16300444
Alignment:
Q  156 aaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagtaaaaggttttagaaaatctcaagatggaaa 246  Q
    ||||| |||||||  ||||||||||||| ||||  |||||||||||||||| ||||||||| ||||  |||||||||| | ||||||||||    
T  16300354 aaaatgaaataaaacatttgtcacaacattaaaagtaaaaggttaagtttgagaaagcagttaaagtctttagaaaatttgaagatggaaa 16300444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 211
Target Start/End: Complemental strand, 20176410 - 20176345
Alignment:
Q  146 tgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaa 211  Q
    ||||||||  ||||| ||| |||| |||| |||||||||||||||||||||||||| |||||||||    
T  20176410 tgtttgcaagaaaattaaaaaaatcatttatcacaacagtaaatataaaaggttaattttgggaaa 20176345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 16299584 - 16299642
Alignment:
Q  106 tgtggagttatagtttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaa 164  Q
    ||||||| || || ||||||||| ||||||||||||||| |||||| | ||||||||||    
T  16299584 tgtggagctacagcttcgcgtagcttttcagcagaaaacttgtttggagaaaaataaaa 16299642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 19589884 - 19589834
Alignment:
Q  138 agaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaa 188  Q
    ||||||| |||||||| ||||||| ||||||| ||||||||||||| ||||    
T  19589884 agaaaacttgtttgcaaaaaaatagaataaatcatttgtcacaacaataaa 19589834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 2475814 - 2475859
Alignment:
Q  138 agaaaacctgtttgcataaaaataaaataaattatttgtcacaaca 183  Q
    ||||||| |||||| | ||||||||||||||| |||||||||||||    
T  2475814 agaaaacttgtttgtaaaaaaataaaataaatcatttgtcacaaca 2475859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 272
Target Start/End: Original strand, 18398133 - 18398173
Alignment:
Q  233 tctcaagatggaaagtgtggttt-aaactaggttcagttat 272  Q
    |||||||||||||| |||||||| |||||||||||||||||    
T  18398133 tctcaagatggaaattgtggtttaaaactaggttcagttat 18398173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 155 - 268
Target Start/End: Complemental strand, 5370869 - 5370754
Alignment:
Q  155 aaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagttt-gggaaagcagt-aaaaggttttagaaaatctcaagatggaaagtgtgg 252  Q
    ||||| |||| |||| ||||||||||||| ||||||||||||||||||||| |||||| |||| |||| | |||||||| ||||||||||||||||||||    
T  5370869 aaaaaaaaaaaaaatcatttgtcacaacaataaatataaaaggttaagttttgggaaaacagttaaaaagatttagaaattctcaagatggaaagtgtgg 5370770  T
Q  253 tttaaactaggttcag 268  Q
    ||||||||||||||||    
T  5370769 tttaaactaggttcag 5370754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 105 - 255
Target Start/End: Complemental strand, 30973063 - 30972913
Alignment:
Q  105 ctgtggagttatagtttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtt 204  Q
    |||||||| ||| | || |||||| ||||| ||||||||| |||||| | |||||||||||| |  |||| |||||||| ||||  ||||||||||||||    
T  30973063 ctgtggagctatggctttgcgtagcttttctgcagaaaacatgtttggagaaaaataaaatataacatttttcacaacaataaaagtaaaaggttaagtt 30972964  T
Q  205 tgggaaagcagtaaaaggttttagaaaatctcaagatggaaagtgtggttt 255  Q
    ||||||| |||| ||||  ||||||||||||||||||| ||||||||||||    
T  30972963 tgggaaaacagttaaagtctttagaaaatctcaagatgaaaagtgtggttt 30972913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 138 - 245
Target Start/End: Complemental strand, 24576813 - 24576705
Alignment:
Q  138 agaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagc-agtaaaaggttttagaaaatctc 236  Q
    ||||||| ||||||||  ||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||| | | ||||| | |||||||| ||||    
T  24576813 agaaaacttgtttgcaagaaagtaaaataaattatttgtcacaacaataaatgtaaaaggttaagtttgggaaaacaattaaaacgatttagaaattctc 24576714  T
Q  237 aagatggaa 245  Q
    |||||||||    
T  24576713 aagatggaa 24576705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 140 - 273
Target Start/End: Original strand, 33855131 - 33855265
Alignment:
Q  140 aaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagc-agtaaaaggttttagaaaatctcaa 238  Q
    ||||| ||||||||  ||||||||| |||| |||||||||||||||||||||||||| | ||| |||||||| | | ||||| | |||||||| ||||||    
T  33855131 aaaacttgtttgcaagaaaataaaaaaaatcatttgtcacaacagtaaatataaaagttaaaggttgggaaaacaattaaaaagatttagaaattctcaa 33855230  T
Q  239 gatggaaagtgtggtttaaactaggttcagttatg 273  Q
      || |||||||||||||||||| |||| ||||||    
T  33855231 agtgaaaagtgtggtttaaactaagttcggttatg 33855265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 211
Target Start/End: Original strand, 16341478 - 16341583
Alignment:
Q  105 ctgtggagttatagtttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtt 204  Q
    |||||||| ||||| |||| |||| ||||| ||||||||| ||||||||  |||||| ||| ||  |||| ||||||||| ||||||||||||||| |||    
T  16341478 ctgtggagctatagcttcgtgtagcttttctgcagaaaacgtgtttgcaataaaatataattaaacatttctcacaacag-aaatataaaaggttaggtt 16341576  T
Q  205 tgggaaa 211  Q
    |||||||    
T  16341577 tgggaaa 16341583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 25894209 - 25894270
Alignment:
Q  135 agcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaag 196  Q
    |||||||||| |||||| |  |||||||||||||| |||||||||||||||||| |||||||    
T  25894209 agcagaaaacttgtttgtaagaaaataaaataaatcatttgtcacaacagtaaaaataaaag 25894270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 164
Target Start/End: Complemental strand, 17270526 - 17270469
Alignment:
Q  107 gtggagttatagtttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaa 164  Q
    |||||| ||||||||||||||| |||| ||||  |||| |||||||||||||||||||    
T  17270526 gtggagctatagtttcgcgtagctttttagcatgaaacttgtttgcataaaaataaaa 17270469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 207
Target Start/End: Original strand, 13232016 - 13232118
Alignment:
Q  105 ctgtggagttatagtttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtt 204  Q
    |||||||| ||||||| ||||||| | ||||  ||||||  | |||| || |||||||| ||||| ||||| ||  | | ||||||||||||||||||||    
T  13232016 ctgtggagctatagttccgcgtagctcttcaatagaaaatttatttgaatgaaaataaagtaaatcatttggcattataataaatataaaaggttaagtt 13232115  T
Q  205 tgg 207  Q
    |||    
T  13232116 tgg 13232118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 125 - 273
Target Start/End: Original strand, 21671024 - 21671172
Alignment:
Q  125 gtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagta-aaaggt 223  Q
    |||| ||||||||| ||||| |||||| |  |||||||||||||| ||||||| ||||| ||||| ||||| |||||||| |||||| ||||  ||| |     
T  21671024 gtagcttttcagcataaaacttgtttgtaagaaaataaaataaatcatttgtcccaacaataaatctaaaaagttaagtt-gggaaaacagtttaaaaga 21671122  T
Q  224 tttagaaaatctcaagatggaaagtgtggtttaaactaggttcagttatg 273  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  21671123 tttagaaattctcaagatggaaagtgtggtttaaactaagttcagttatg 21671172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 125 - 273
Target Start/End: Original strand, 21678440 - 21678588
Alignment:
Q  125 gtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagta-aaaggt 223  Q
    |||| ||||||||| ||||| |||||| |  |||||||||||||| ||||||| ||||| ||||| ||||| |||||||| || ||| ||||  ||| |     
T  21678440 gtagcttttcagcataaaacttgtttgtaagaaaataaaataaatcatttgtcccaacaataaatctaaaaagttaagtt-ggaaaaacagtttaaaaga 21678538  T
Q  224 tttagaaaatctcaagatggaaagtgtggtttaaactaggttcagttatg 273  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  21678539 tttagaaattctcaagatggaaagtgtggtttaaactaagttcagttatg 21678588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 238
Target Start/End: Original strand, 15257383 - 15257488
Alignment:
Q  132 ttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagtaaaaggttttagaaa 231  Q
    ||||||||||||| | |||| | ||||||||||||||  |||||||||| |||||||  ||||| ||||||||||| |||| ||| ||||  ||||||||    
T  15257383 ttcagcagaaaacttatttggaaaaaaataaaataaaacatttgtcaca-cagtaaaagtaaaaagttaagtttggcaaagtagttaaagtctttagaaa 15257481  T
Q  232 atctcaa 238  Q
    |||||||    
T  15257482 atctcaa 15257488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 25234526 - 25234454
Alignment:
Q  129 tttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaa 201  Q
    |||| ||| ||||||| ||||||||  |||||||||||||| |||| | |||||| |||||||||||||||||    
T  25234526 ttttccagtagaaaacttgtttgcaagaaaataaaataaatcattttttacaacaataaatataaaaggttaa 25234454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 273
Target Start/End: Original strand, 19882278 - 19882409
Alignment:
Q  138 agaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagt-aaaaggttttagaaaatctc 236  Q
    ||||||| | ||||||  || ||||| ||||| ||||||||||||||||||     ||||||||||||||| |  || | |||| | |||| ||| ||||    
T  19882278 agaaaacttatttgcaagaatataaagtaaatcatttgtcacaacagtaaa-----aaggttaagtttggggatacaattaaaaagatttataaattctc 19882372  T
Q  237 aagatggaaagtgtggtttaaactaggttcagttatg 273  Q
    |||| ||||| | |||||||||||||||| |||||||    
T  19882373 aagacggaaaatatggtttaaactaggtttagttatg 19882409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 15245117 - 15245068
Alignment:
Q  134 cagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaaca 183  Q
    ||||||||||| ||||||||  |||||||||||||| |||||||| ||||    
T  15245117 cagcagaaaacttgtttgcaagaaaataaaataaatcatttgtcataaca 15245068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 33079618 - 33079573
Alignment:
Q  138 agaaaacctgtttgcataaaaataaaataaattatttgtcacaaca 183  Q
    ||||||| ||||||||  | ||||||||||||||||||||||||||    
T  33079618 agaaaacttgtttgcaagagaataaaataaattatttgtcacaaca 33079573  T

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