View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10345_high_3 (Length: 450)

Name: NF10345_high_3
Description: NF10345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10345_high_3
NF10345_high_3
[»] chr2 (6 HSPs)
chr2 (17-441)||(20967933-20968357)
chr2 (380-434)||(20712279-20712333)
chr2 (392-426)||(21021045-21021079)
chr2 (392-441)||(20980816-20980865)
chr2 (381-426)||(20699211-20699256)
chr2 (393-434)||(20975813-20975853)
[»] scaffold0097 (1 HSPs)
scaffold0097 (380-434)||(16118-16172)
[»] chr7 (6 HSPs)
chr7 (394-438)||(19645455-19645499)
chr7 (392-435)||(21218472-21218515)
chr7 (394-438)||(7310973-7311017)
chr7 (394-438)||(7328441-7328485)
chr7 (394-438)||(19325748-19325792)
chr7 (392-436)||(22524938-22524982)
[»] scaffold0649 (1 HSPs)
scaffold0649 (392-438)||(5689-5735)
[»] chr3 (2 HSPs)
chr3 (44-88)||(38850359-38850403)
chr3 (43-88)||(49933439-49933484)
[»] scaffold0128 (1 HSPs)
scaffold0128 (392-435)||(4400-4443)
[»] chr5 (2 HSPs)
chr5 (392-435)||(42298374-42298417)
chr5 (43-88)||(3775073-3775118)
[»] chr4 (1 HSPs)
chr4 (392-438)||(6113352-6113398)


Alignment Details
Target: chr2 (Bit Score: 417; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 17 - 441
Target Start/End: Complemental strand, 20968357 - 20967933
Alignment:
Q  17 atcatcatggatgtaaacaaattctgaacaacaacaattaggttttatcctactaagtgaggtcggctacataaattcagaagaacatttgatatatata 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20968357 atcatcatggatgtaaacaaattctgaacaacaacaattaggttttatcctactaagtgaggtcggctacataaattcagaagaacatttgatatatata 20968258  T
Q  117 ttaatttgcaaaaacgtctcattccgaaaaccaaacacagataaccaaattctaaaaaggaaattggatcacctagtttattttacatacgatctgtaca 216  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20968257 ttaatttgcaaaaacatctcattccgaaaaccaaacacagataaccaaattctaaaaaggaaattggatcacctagtttattttacatacgatctgtaca 20968158  T
Q  217 aacgtcttgaaggaaatgaaattaatagaagtttaaagaaataaaacaatttggttcagtaatcttcccaagcttactgaattgtgttcagtaatctttc 316  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20968157 aacgtcttgaaggaaatgaaattaataaaagtttaaagaaataaaacaatttggttcagtaatcttcccaagcttactgaattgtgttcagtaatctttc 20968058  T
Q  317 tctcgttcccacctttttctatattgtagtacctattgtgtttcaaatttcaattataaataataaatcataaggagaacttactttcaacaagttgaaa 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20968057 tctcgttcccacctttttctatattgtagtacctattgtgtttcaaatttcaattataaataataaatcataaggagaacttactttcaacaagttgaaa 20967958  T
Q  417 ccaaactttcgatataatcctttgc 441  Q
    |||||||||||||||||||||||||    
T  20967957 ccaaactttcgatataatcctttgc 20967933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 380 - 434
Target Start/End: Original strand, 20712279 - 20712333
Alignment:
Q  380 taaatcataaggagaacttactttcaacaagttgaaaccaaactttcgatataat 434  Q
    |||||||||||  |||||||||||||||||||||||||||| ||||||| |||||    
T  20712279 taaatcataagaggaacttactttcaacaagttgaaaccaagctttcgacataat 20712333  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 426
Target Start/End: Original strand, 21021045 - 21021079
Alignment:
Q  392 agaacttactttcaacaagttgaaaccaaactttc 426  Q
    |||||||||||||||||||||||||||||||||||    
T  21021045 agaacttactttcaacaagttgaaaccaaactttc 21021079  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 392 - 441
Target Start/End: Complemental strand, 20980865 - 20980816
Alignment:
Q  392 agaacttactttcaacaagttgaaaccaaactttcgatataatcctttgc 441  Q
    ||||||||||||| |||||||||| |||||||| ||||||||||| ||||    
T  20980865 agaacttactttctacaagttgaagccaaacttacgatataatccattgc 20980816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 426
Target Start/End: Original strand, 20699211 - 20699256
Alignment:
Q  381 aaatcataaggagaacttactttcaacaagttgaaaccaaactttc 426  Q
    ||||||||||  |||||||||||||| |||||||||| ||||||||    
T  20699211 aaatcataagaggaacttactttcaaaaagttgaaactaaactttc 20699256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 434
Target Start/End: Complemental strand, 20975853 - 20975813
Alignment:
Q  393 gaacttactttcaacaagttgaaaccaaactttcgatataat 434  Q
    ||||||||||| |||||||||||||||| |||||||||||||    
T  20975853 gaacttacttt-aacaagttgaaaccaagctttcgatataat 20975813  T

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Target: scaffold0097 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 380 - 434
Target Start/End: Original strand, 16118 - 16172
Alignment:
Q  380 taaatcataaggagaacttactttcaacaagttgaaaccaaactttcgatataat 434  Q
    |||||||||||  |||||||||||||||||||||||||||| ||||||| |||||    
T  16118 taaatcataagaggaacttactttcaacaagttgaaaccaagctttcgacataat 16172  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 438
Target Start/End: Original strand, 19645455 - 19645499
Alignment:
Q  394 aacttactttcaacaagttgaaaccaaactttcgatataatcctt 438  Q
    ||||||||||||||||||||||||||||||||| | |||||||||    
T  19645455 aacttactttcaacaagttgaaaccaaactttcaacataatcctt 19645499  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 435
Target Start/End: Original strand, 21218472 - 21218515
Alignment:
Q  392 agaacttactttcaacaagttgaaaccaaactttcgatataatc 435  Q
    ||||||||||||||| ||||||||||||| ||||||| ||||||    
T  21218472 agaacttactttcaagaagttgaaaccaagctttcgacataatc 21218515  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 438
Target Start/End: Original strand, 7310973 - 7311017
Alignment:
Q  394 aacttactttcaacaagttgaaaccaaactttcgatataatcctt 438  Q
    ||||||||||||| | |||||||||| |||||||| |||||||||    
T  7310973 aacttactttcaataggttgaaaccagactttcgacataatcctt 7311017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 438
Target Start/End: Complemental strand, 7328485 - 7328441
Alignment:
Q  394 aacttactttcaacaagttgaaaccaaactttcgatataatcctt 438  Q
    |||||||||||| || |||||||||| |||||||| |||||||||    
T  7328485 aacttactttcagcaggttgaaaccagactttcgacataatcctt 7328441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 438
Target Start/End: Original strand, 19325748 - 19325792
Alignment:
Q  394 aacttactttcaacaagttgaaaccaaactttcgatataatcctt 438  Q
    |||||||||||||||| ||||| |||||||||| | |||||||||    
T  19325748 aacttactttcaacaaattgaagccaaactttcaacataatcctt 19325792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 436
Target Start/End: Original strand, 22524938 - 22524982
Alignment:
Q  392 agaacttactttcaacaagttgaaaccaaactttcgatataatcc 436  Q
    ||||||||||||||| ||||||||||||| ||||| | |||||||    
T  22524938 agaacttactttcaagaagttgaaaccaagctttcaacataatcc 22524982  T

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Target: scaffold0649 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0649
Description:

Target: scaffold0649; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 438
Target Start/End: Complemental strand, 5735 - 5689
Alignment:
Q  392 agaacttactttcaacaagttgaaaccaaactttcgatataatcctt 438  Q
    |||||||||||||||||||  |||||||||||||| |||||||||||    
T  5735 agaacttactttcaacaagcagaaaccaaactttcaatataatcctt 5689  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 38850403 - 38850359
Alignment:
Q  44 acaacaacaattaggttttatcctactaagtgaggtcggctacat 88  Q
    |||||||||| || |||||||||||||||||| ||||||||||||    
T  38850403 acaacaacaactaagttttatcctactaagtggggtcggctacat 38850359  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 49933439 - 49933484
Alignment:
Q  43 aacaacaacaattaggttttatcctactaagtgaggtcggctacat 88  Q
    |||||||||||| | | ||||||| |||||||||||||||||||||    
T  49933439 aacaacaacaatcaagctttatcccactaagtgaggtcggctacat 49933484  T

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Target: scaffold0128 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 435
Target Start/End: Complemental strand, 4443 - 4400
Alignment:
Q  392 agaacttactttcaacaagttgaaaccaaactttcgatataatc 435  Q
    ||||||||||||||| ||||||||||||| ||||||| ||||||    
T  4443 agaacttactttcaagaagttgaaaccaagctttcgacataatc 4400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 435
Target Start/End: Complemental strand, 42298417 - 42298374
Alignment:
Q  392 agaacttactttcaacaagttgaaaccaaactttcgatataatc 435  Q
    ||||||||||||||| ||||||||||||| ||||||| ||||||    
T  42298417 agaacttactttcaagaagttgaaaccaagctttcgacataatc 42298374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 3775073 - 3775118
Alignment:
Q  43 aacaacaacaattaggttttatcctactaagtgaggtcggctacat 88  Q
    |||||||||||| ||| ||||||| |||||||| ||||||||||||    
T  3775073 aacaacaacaatcaggctttatcccactaagtggggtcggctacat 3775118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 438
Target Start/End: Complemental strand, 6113398 - 6113352
Alignment:
Q  392 agaacttactttcaacaagttgaaaccaaactttcgatataatcctt 438  Q
    |||||||||| ||||||||| |||||||||||||| ||||| |||||    
T  6113398 agaacttactatcaacaagtcgaaaccaaactttcaatatactcctt 6113352  T

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