View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10345_high_5 (Length: 334)
Name: NF10345_high_5
Description: NF10345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10345_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 323
Target Start/End: Complemental strand, 23934493 - 23934185
Alignment:
| Q |
18 |
cagaacttacagctatctgttcagaaatgggagagcgacctgtacatagtagacaggttcgacattttatgtattactagtttcttgattactgttttac |
117 |
Q |
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| T |
23934493 |
cagaacttacagctatctgttcagaaatgggagagcgacctgtacatagtagacaggttcgacattttatgtattactagtttcttgattactgttttac |
23934394 |
T |
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| Q |
118 |
ggcatgtatgtatctatatactgctcgatggagaaaatagtt---gtttaatacaacagtgtttaatgtcatatttgtgtaacaataatttggaatgatg |
214 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
23934393 |
ggcatgtatgtatctatatactgctcgacggagaaaatagtttaagtttaatacaacagtgtttaatgtcatatttgtgtgacaataatttggaatgatg |
23934294 |
T |
|
| Q |
215 |
atataatattcctagcattattagaagcttatacacaaatttgtcaaagtttatagttctgttggttgttactgtcgaattatgcaaccgagattatttg |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
23934293 |
atataatattcctagcattattagaagcttatacacaaatttgtcaaagtttatagttctgttcgttgttactgtcgaattatgcaatcgagattatttg |
23934194 |
T |
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| Q |
315 |
ttcattcat |
323 |
Q |
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||||||||| |
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| T |
23934193 |
ttcattcat |
23934185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 29707882 - 29707831
Alignment:
| Q |
21 |
aacttacagctatctgttcagaaatgggagagcgacctgtacatagtagaca |
72 |
Q |
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|||||| |||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
29707882 |
aacttatagctatttgttctgaaatgggagagcgacctgtacatagtagaca |
29707831 |
T |
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