View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10345_high_9 (Length: 245)
Name: NF10345_high_9
Description: NF10345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10345_high_9 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 74 - 245
Target Start/End: Original strand, 33385064 - 33385229
Alignment:
| Q |
74 |
ttttgaaaaatgaataacacataatcaataatcaatgaatttgatagaagaatgatttattaagcaaagaaagttttgtttcctattaatgttgtggaaa |
173 |
Q |
| |
|
|||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33385064 |
ttttgaaaaaggaataacacataatcaatga------aatttgatagaagaatgatttattaagcaaagaaagttttgtttcctattaatgttgtggaaa |
33385157 |
T |
|
| Q |
174 |
ttagtcctatatatacattatacttgacatgatggtgagaatatggttcagaaacaaatgaagggggttact |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33385158 |
ttagtcctatatatacattatacttgacatgatggtgagaatatggttcagaaacaaatgaagggggctact |
33385229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 33384801 - 33384869
Alignment:
| Q |
14 |
agaagaacaatgaaggaaggggattcatcccttggaaaaagatggatagaaaagaatgcattttgaaaa |
82 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33384801 |
agaagaacaatgaaggaaggggattcatcccttggaaaaagatggatagaaaagaatgcattttgaaaa |
33384869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University