View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10345_low_1 (Length: 562)

Name: NF10345_low_1
Description: NF10345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10345_low_1
NF10345_low_1
[»] chr7 (7 HSPs)
chr7 (17-552)||(39600314-39600849)
chr7 (82-471)||(39781205-39781594)
chr7 (475-551)||(39780152-39780228)
chr7 (72-281)||(39611075-39611279)
chr7 (124-324)||(40284738-40284938)
chr7 (124-291)||(40279777-40279944)
chr7 (124-291)||(40458406-40458573)
[»] chr4 (2 HSPs)
chr4 (170-240)||(28649868-28649938)
chr4 (170-243)||(10124267-10124340)
[»] chr3 (1 HSPs)
chr3 (170-243)||(25040653-25040726)


Alignment Details
Target: chr7 (Bit Score: 528; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 17 - 552
Target Start/End: Original strand, 39600314 - 39600849
Alignment:
Q  17 aataaccaagctcataaaattaaataaagtaataaacacgctagctagagttgtttcaacaggatcaaatctggttggagttgtctgcacaagtcgacgt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  39600314 aataaccaagctcataaaattaaataaagtaataaacacgctagctagagttgtttcaacaggaccaaatctggttggagttgtctgcacaagtcgacgt 39600413  T
Q  117 aagtaagataaatcaaacgatttttggcaccagtcctatgaatattgctatgtttgcagaaatatttcaaatgttgaagcttgcaacacccaatcatctg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39600414 aagtaagataaatcaaacgatttttggcaccagtcctatgaatattgctatgtttgcagaaatatttcaaatgttgaagcttgcaacacccaatcatctg 39600513  T
Q  217 acccaacaacaaaaacaaccaattgattgttctcttctttgtgattattggattcatagcattttcttgtccacacttttcgcactttggaagcatagga 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39600514 acccaacaacaaaaacaaccaattgattgttctcttctttgtgattattggattcatagcgttttcttgtccacacttttcgcactttggaagcatagga 39600613  T
Q  317 ttcatccaagcctcaggtgcacgatcattcatgtcgttcttgttgttttcaatgaactcaacaacttcattaaacttttcgttcaaatcaaattcaagaa 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39600614 ttcatccaagcctcaggtgcacgatcattcatgtcgttcttgttgttttcaatgaactcaacaacttcattaaacttttcgttcaaatcaaattcaagaa 39600713  T
Q  417 cgctttgaaaatcgcattttccgcattcaacctttccactaattgtgttgaagcctttagatagcaagtggtgaatggtataaactttggcacgtttaca 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39600714 cgctttgaaaatcgcattttccgcattcaacctttccactaattgtgttgaagcctttagatagcaagtggtgaatggtataaactttggcacgtttaca 39600813  T
Q  517 agtagcccatggaaaaggtgggtttattgtctctgc 552  Q
    ||||||||||||||||||||||||||||||||||||    
T  39600814 agtagcccatggaaaaggtgggtttattgtctctgc 39600849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 82 - 471
Target Start/End: Complemental strand, 39781594 - 39781205
Alignment:
Q  82 caaatctggttggagttgtctgcacaagtcgacgtaagtaagataaatcaaacgatttttggcaccagtcctatgaatattgctatgtttgcagaaatat 181  Q
    ||||||||||||||||||  ||||||||||||| ||||| |||||||| ||||||| ||||||||   ||||| || ||||| |||| |||||||||||     
T  39781594 caaatctggttggagttgcttgcacaagtcgacataagtcagataaattaaacgatctttggcactgatcctaagattattggtatgcttgcagaaatac 39781495  T
Q  182 ttcaaatgttgaagcttgcaacacccaatcatctgacccaacaacaaaaacaaccaattgattgttctcttctttgtgattattggattcatagcatttt 281  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  39781494 ttcaaatgttgaagcttgcaacacccaatcatctgacccaataacaagaacaaccaattaatggttctcttctttgtgattattggattcatagcatttt 39781395  T
Q  282 cttgtccacacttttcgcactttggaagcataggattcatccaagcctcaggtgcacgatcattcatgtcgttcttgttgttttcaatgaactcaacaac 381  Q
    ||||||||||||| ||||| || ||||||| ||||||||||||||||| |||||||||||||| ||||| || |||||| ||||||||||||||||||||    
T  39781394 cttgtccacacttgtcgcatttgggaagcacaggattcatccaagccttaggtgcacgatcatgcatgttgtacttgttcttttcaatgaactcaacaac 39781295  T
Q  382 ttcattaaacttttcgttcaaatcaaattcaagaacgctttgaaaatcgcattttccgcattcaacctttccactaattgtgttgaagcc 471  Q
    ||||| ||||||||| |||||||||||||  ||||| | ||| ||  | |||| |  ||||| |||| ||||||  ||||||||||||||    
T  39781294 ttcatcaaacttttccttcaaatcaaattggagaacacgttggaagccacattgtttgcattgaaccgttccaccgattgtgttgaagcc 39781205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 475 - 551
Target Start/End: Complemental strand, 39780228 - 39780152
Alignment:
Q  475 agatagcaagtggtgaatggtataaactttggcacgtttacaagtagcccatggaaaaggtgggtttattgtctctg 551  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| || |||||||||||||||||||    
T  39780228 agatagcaattggtgaatggtataaactttggcacgtttgcaagtggcccatgggaatggtgggtttattgtctctg 39780152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 72 - 281
Target Start/End: Original strand, 39611075 - 39611279
Alignment:
Q  72 tcaacaggatcaaatctggttggagttgtctgcacaagtcgacgtaagtaagataaatcaaacgatttttggcaccagtcctatgaatattgctatgttt 171  Q
    |||||| || |||||||| |||||||||| ||||||||| ||| ||||    |||| | || |||| || |||||||||||||||| |||    ||  ||    
T  39611075 tcaacacgaccaaatctgcttggagttgtttgcacaagttgacataag----ataatttaaccgatcttcggcaccagtcctatgattatcaggatactt 39611170  T
Q  172 gcagaaatatttcaaatgttgaagcttgcaacacccaatcatctgacccaac--aacaaaaacaaccaattgattgttctcttctttgtgattattggat 269  Q
    ||||| ||||||  ||||||  |||||||||||||||||||||||||| |||  | ||| |||||||| ||||| |||||||| |||   ||||| ||||    
T  39611171 gcagacatatttataatgtttgagcttgcaacacccaatcatctgacctaactgagcaagaacaaccagttgatcgttctctttttt---attatcggat 39611267  T
Q  270 tcatagcatttt 281  Q
    ||||||||||||    
T  39611268 tcatagcatttt 39611279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 124 - 324
Target Start/End: Original strand, 40284738 - 40284938
Alignment:
Q  124 ataaatcaaacgatttttggcaccagtcctatgaatattgctatgtttgcagaaatatttcaaatgttgaagcttgcaacacccaatcatctgacccaac 223  Q
    ||||||||| | |||||||||||| || || || ||||    ||||||||||||||| ||||| || |  |||||||||||||| ||||| ||||| |||    
T  40284738 ataaatcaatctatttttggcacctgttctgtgtatatcagcatgtttgcagaaatacttcaattgatcgagcttgcaacaccctatcatttgacctaac 40284837  T
Q  224 aacaaaaacaaccaattgattgttctcttctttgtgattattggattcatagcattttcttgtccacacttttcgcactttggaagcataggattcatcc 323  Q
    | ||| ||||||||||||||  ||||||||||||| || | ||||| ||| || || |||| ||||||  | ||||| || || | || |||||||||||    
T  40284838 agcaagaacaaccaattgatgtttctcttctttgtcatcaatggatgcattgctttctcttttccacaagtctcgcagttcggtatcacaggattcatcc 40284937  T
Q  324 a 324  Q
    |    
T  40284938 a 40284938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 124 - 291
Target Start/End: Original strand, 40279777 - 40279944
Alignment:
Q  124 ataaatcaaacgatttttggcaccagtcctatgaatattgctatgtttgcagaaatatttcaaatgttgaagcttgcaacacccaatcatctgacccaac 223  Q
    ||||||||| | |||||||||||| || || || ||||    ||||||||||||||| ||||| || | ||| |||||||| || ||||| |||||||||    
T  40279777 ataaatcaatctatttttggcacctgttctgtgtatatcagcatgtttgcagaaatacttcaattgatcaagattgcaacatcctatcatttgacccaac 40279876  T
Q  224 aacaaaaacaaccaattgattgttctcttctttgtgattattggattcatagcattttcttgtccaca 291  Q
    | ||| ||||||||||| ||  ||||||||||||| || | ||||| ||| || || |||||||||||    
T  40279877 agcaagaacaaccaatttatatttctcttctttgtcatcaatggatgcattgctttctcttgtccaca 40279944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 124 - 291
Target Start/End: Complemental strand, 40458573 - 40458406
Alignment:
Q  124 ataaatcaaacgatttttggcaccagtcctatgaatattgctatgtttgcagaaatatttcaaatgttgaagcttgcaacacccaatcatctgacccaac 223  Q
    ||||||||| | |||||||||||| || || || ||||    ||||||||||||||| ||||| || | ||| |||||||| || ||||| |||||||||    
T  40458573 ataaatcaatctatttttggcacctgttctgtgtatatcagcatgtttgcagaaatacttcaattgatcaagattgcaacatcctatcatttgacccaac 40458474  T
Q  224 aacaaaaacaaccaattgattgttctcttctttgtgattattggattcatagcattttcttgtccaca 291  Q
    | ||| ||||||||||| ||  ||||||||||||| || | ||||| ||| || || |||||||||||    
T  40458473 agcaagaacaaccaatttatatttctcttctttgtcatcaatggatgcattgctttctcttgtccaca 40458406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 28649868 - 28649938
Alignment:
Q  170 ttgcagaaatatttcaaatgttgaagcttgcaacacccaatcatctgacccaacaacaaaaacaaccaatt 240  Q
    ||||| ||||| ||||| |||| ||| |||||||| |||| ||| || |||||||||||||||||||||||    
T  28649868 ttgcaaaaatacttcaattgtttaagattgcaacaaccaagcatttgtcccaacaacaaaaacaaccaatt 28649938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 243
Target Start/End: Original strand, 10124267 - 10124340
Alignment:
Q  170 ttgcagaaatatttcaaatgttgaagcttgcaacacccaatcatctgacccaacaacaaaaacaaccaattgat 243  Q
    ||||| ||||||||||| |||| |||||| ||||| |||| ||| || || | ||||| |||||||||||||||    
T  10124267 ttgcaaaaatatttcaattgttcaagcttacaacaaccaagcatttgtcctagcaacagaaacaaccaattgat 10124340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 170 - 243
Target Start/End: Original strand, 25040653 - 25040726
Alignment:
Q  170 ttgcagaaatatttcaaatgttgaagcttgcaacacccaatcatctgacccaacaacaaaaacaaccaattgat 243  Q
    ||||| ||||| ||||| |||| |||||||||||| ||||| || || |||| ||||| |||||||||||||||    
T  25040653 ttgcaaaaatacttcaattgttcaagcttgcaacaaccaattatttgtcccagcaacagaaacaaccaattgat 25040726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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