View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10345_low_11 (Length: 289)
Name: NF10345_low_11
Description: NF10345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10345_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 26309671 - 26309419
Alignment:
| Q |
18 |
ggtatcaatcaatctcattgatttgtttttggagaattattaccttccttgtatgtacttcaactactagtttataactccctctttttctgatgaaaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
26309671 |
ggtatcaatcaatctcattgatttgtttttggagaattattaccttccttgtatatacttcaactactagtttataactccctctttttctgatgaatat |
26309572 |
T |
|
| Q |
118 |
tgcactatgatgttgggtgggaaggacaaaagggataagacaaaacttgtttgttagagatccaattgcaatagaattacctcaaagccatcatccacac |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26309571 |
tgcactatgatgttgggtgagaaggacaaaagggataagacaaaacttgtttgttagagatccaattgcaatagaattacctcaaagc---catccacac |
26309475 |
T |
|
| Q |
218 |
aatacaaaggaggatctcgacatcatgaacaggtcaatttaattatcaaccctatg |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26309474 |
gatacaaaggaggatctcgacatcatgaacaggtcaatttaattatcaaccctatg |
26309419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University