View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10345_low_12 (Length: 264)
Name: NF10345_low_12
Description: NF10345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10345_low_12 |
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| [»] scaffold2134 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 21 - 228
Target Start/End: Original strand, 37337655 - 37337862
Alignment:
| Q |
21 |
tgaacagtttcatttgccttattccaaacgaaatcctgagaaaatcaaaacttcacctccctatttcaagcatggctgatcgtcctctcactgcattgct |
120 |
Q |
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|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
37337655 |
tgaacagtatcatttgccttattccaaacgaaatcatgagaaaatcaaaacttcacctccctatttcaagcatggtcgatcgtcctctcaatgcattgct |
37337754 |
T |
|
| Q |
121 |
ctcctaccattgcctcacaggtatataacatttgtcatcattaggatgctttccctattttcgtttcttttgtacaacatgtttttccgtgaatatttct |
220 |
Q |
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||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37337755 |
ctcctaccattgcctcacatgtatataacatctgtcatcattagaatgctttccctattttcgtttcttttgtacaacatgtttttccgtgaatatttct |
37337854 |
T |
|
| Q |
221 |
aacatggt |
228 |
Q |
| |
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|||||||| |
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| T |
37337855 |
aacatggt |
37337862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 34 - 229
Target Start/End: Complemental strand, 11300504 - 11300309
Alignment:
| Q |
34 |
ttgccttattccaaacgaaatcctgagaaaatcaaaacttcacctccctatttcaagcatggctgatcgtcctctcactgcattgctctcctaccattgc |
133 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||| |
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| T |
11300504 |
ttgccttattccaaacgaaatcctgagaaaatcaaaacttcacctccctatttcaagcatggccgattgttctctcactgcattgctctcctaccattgc |
11300405 |
T |
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| Q |
134 |
ctcacaggtatataacatttgtcatcattaggatgctttccctattttcgtttcttttgtacaacatgtttttccgtgaatatttctaacatggtg |
229 |
Q |
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| T |
11300404 |
ctcacgggtatataacatacgtcatcattagaatgctttccctattttcgtttcttttgtacaacatgtttttccgtgaatatttctaacatggtg |
11300309 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 21 - 228
Target Start/End: Original strand, 15296477 - 15296684
Alignment:
| Q |
21 |
tgaacagtttcatttgccttattccaaacgaaatcctgagaaaatcaaaacttcacctccctatttcaagcatggctgatcgtcctctcactgcattgct |
120 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
15296477 |
tgaacagtttcatttgccttattccaaacgaaatcatgagaaaatcaaaacttcacctccctatttcaagcatgttcgatcgtcctctcactgcatcgct |
15296576 |
T |
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| Q |
121 |
ctcctaccattgcctcacaggtatataacatttgtcatcattaggatgctttccctattttcgtttcttttgtacaacatgtttttccgtgaatatttct |
220 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
15296577 |
ctcctaccattgcctcacaggtatataacatctgtcatcattagaatgctttccctattttcgtttcttttgtacaacatgttttaccctgaatatttct |
15296676 |
T |
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| Q |
221 |
aacatggt |
228 |
Q |
| |
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|||||||| |
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| T |
15296677 |
aacatggt |
15296684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 59 - 229
Target Start/End: Complemental strand, 47968392 - 47968222
Alignment:
| Q |
59 |
agaaaatcaaaacttcacctccctatttcaagcatggctgatcgtcctctcactgcattgctctcctaccattgcctcacaggtatataacatttgtcat |
158 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47968392 |
agaaaatcaaaacttcacctccctatttcaagcatggctgatcgtcctctcggtgcattgctctcctaccattgcctcacaggtatataacatctgtcat |
47968293 |
T |
|
| Q |
159 |
cattaggatgctttccctattttcgtttcttttgtacaacatgtttttccgtgaatatttctaacatggtg |
229 |
Q |
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| T |
47968292 |
cattaggatgccttccctattttcgtttcttttgtacaacatgtttttccgttaatatttctaacatggtg |
47968222 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 30 - 149
Target Start/End: Original strand, 44508948 - 44509067
Alignment:
| Q |
30 |
tcatttgccttattccaaacgaaatcctgagaaaatcaaaacttcacctccctatttcaagcatggctgatcgtcctctcactgcattgctctcctacca |
129 |
Q |
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|||| ||||||||||||||| |||| | ||||| || |||||||||||||||| | ||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
44508948 |
tcatctgccttattccaaacaaaattccgagaacataaaaacttcacctccctgtatcaagcatggccgatcgtcctctcactgctttgctctcctacca |
44509047 |
T |
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| Q |
130 |
ttgcctcacaggtatataac |
149 |
Q |
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| T |
44509048 |
ttgcctcacagatatataac |
44509067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 23828780 - 23828850
Alignment:
| Q |
68 |
aaacttcacctccctatttcaagcatggctgatcgtcctctcactgcattgctctcctaccattgcctcac |
138 |
Q |
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| T |
23828780 |
aaacttaacttccctatttcaagcatggccaatcgtcctcccaccgcattgctctcctacctttgtctcac |
23828850 |
T |
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Target: scaffold2134 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold2134
Description:
Target: scaffold2134; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 128 - 188
Alignment:
| Q |
68 |
aaacttcacctccctatttcaagcatggctgatcgtcctctcactgcattgctctcctacc |
128 |
Q |
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|||||| || |||||||||||| ||||| ||||| |||||||| ||| |||||||||||| |
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| T |
128 |
aaactttacttccctatttcaaccatggacgatcgccctctcaccgcactgctctcctacc |
188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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