View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10345_low_16 (Length: 242)
Name: NF10345_low_16
Description: NF10345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10345_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 3017276 - 3017051
Alignment:
| Q |
1 |
atctaaacattgcttacaaagtttgggtaatcctcaccttacaagtcagttttgtggggtcaagttcaacgtaaaatctaagaaatgcaaagataaaata |
100 |
Q |
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| T |
3017276 |
atctaaacattgcttacaaagtttgggtaatcctcaccttacaagtcagttttgtggggtcaagttcaacgtaaaatctaagaaatgcaaagataaaata |
3017177 |
T |
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| Q |
101 |
ccgaagctataatgctaaacctgtagtcatgtatgcaacagttcttaccttattgtcttcaagaaaagccgaaacatctccaaaatgagggcatcacatt |
200 |
Q |
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| T |
3017176 |
ccgaagctataatgctagacctgtagtcatgtatgcaacagttcttaccttattgtcttcaagaaaagccgaaacatctccaaaatgagggcatcacatt |
3017077 |
T |
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| Q |
201 |
caagatccagcattaccacacataac |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
3017076 |
caagatccagcattaccacacataac |
3017051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 3032867 - 3032790
Alignment:
| Q |
146 |
taccttattgtcttcaagaaaagccgaaacatctccaaaatgagggcatcacattcaagatccagcattaccacacat |
223 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3032867 |
taccttattgtcttcaagaaatgctgaaacatctccaaaatgagggcatcgcattcaagatccagcattaccacacat |
3032790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 48969855 - 48969931
Alignment:
| Q |
147 |
accttattgtcttcaagaaaagccgaaacatctccaaaatgagggcatcacattcaagatccagcattaccacacat |
223 |
Q |
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||||||| |||||||| ||| || |||||||||||||||| || |||||||| ||||| |||| ||||||||||||| |
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| T |
48969855 |
accttatggtcttcaaaaaatgctgaaacatctccaaaatcagcgcatcacaatcaaggtccaacattaccacacat |
48969931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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