View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10345_low_2 (Length: 543)
Name: NF10345_low_2
Description: NF10345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10345_low_2 |
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| [»] scaffold0392 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Original strand, 56067886 - 56068427
Alignment:
| Q |
1 |
caagaaaggcttcttcccatagcaaacgtgggtaggatcatgaagaaagcgttaccggcgagagcaaagatatcgaaagaagctaaagaaacgatgcaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
56067886 |
caagaaaggcttcttcccatagcaaacgtgggtaggatcatgaagaaagcgttaccgacgagagcaaagatatcgaaagaagctaaagaaacgatgcaag |
56067985 |
T |
|
| Q |
101 |
agtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaagaggaagacaataaacggtgatgatcttgtgtgggc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
56067986 |
agtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaagaggaagacaataaacggtgatgatcttgtgtgggc |
56068085 |
T |
|
| Q |
201 |
catgactacacttggctttgaagaatatgcagagcctcttaagggttatcttctcaagtatagggaaattgaaggagacaagaatttctctatgaatatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56068086 |
catgactacacttggctttgaagaatatgcagagcctcttaagggttatcttctcaagtatagggaaattgaaggagacaagaatttctctatgaatatg |
56068185 |
T |
|
| Q |
301 |
attggtagtagtaaggagcagcaaggtagtattcatcgattcttccaaggttaattatatttgcaacaactaatagcaggtttatttgtttatttatgcc |
400 |
Q |
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|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56068186 |
attggtagtaataaggagcaggaaggtagtattcatcgattcttccaaggttaattatatttgcaacaactaatagcaggtttatttgtttatttatgcc |
56068285 |
T |
|
| Q |
401 |
tctttttgaggcttttaatgtctgattgcagaactatacactagtttgtta---------------ttgttgttgagattataatatacacattaagtat |
485 |
Q |
| |
|
|| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
56068286 |
tccttttgaggcttttaatgtttgattgcagaactatacactagtttgttattgttgtttgtatttttgttgttgagattataatatacacattaagtat |
56068385 |
T |
|
| Q |
486 |
agtgatgatttgtatttttgttttgagattgagaatatatat |
527 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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| T |
56068386 |
agtgatgatttgtatttttgttttgagattgagaatatatat |
56068427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 9722624 - 9722852
Alignment:
| Q |
1 |
caagaaaggcttcttcccatagcaaacgtgggtaggatcatgaagaaagcgttaccggcgagagcaaagatatcgaaagaagctaaagaaacgatgcaag |
100 |
Q |
| |
|
||||| ||| ||||||| |||||||||||| ||||||||||||| || || ||||| || | |||||||| || |||||||| |||||||| | |||| |
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| T |
9722624 |
caagataggtttcttccaatagcaaacgtgagtaggatcatgaaaaaggctttaccagcaaacgcaaagatctcaaaagaagcaaaagaaacagtacaag |
9722723 |
T |
|
| Q |
101 |
agtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaagaggaagacaataaacggtgatgatcttgtgtgggc |
200 |
Q |
| |
|
|||||||||||||||| || || |||||||| || ||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||| | ||||| |
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| T |
9722724 |
agtgtgtatcagagtttatcagtttcataactggagaagcttctgataagtgtcagaaagagaagaggaaaacaatcaacggtgatgatcttctttgggc |
9722823 |
T |
|
| Q |
201 |
catgactacacttggctttgaagaatatg |
229 |
Q |
| |
|
||||| || ||||| |||||||| |||| |
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|
| T |
9722824 |
tatgacaactcttggatttgaagattatg |
9722852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 76 - 222
Target Start/End: Original strand, 38281641 - 38281787
Alignment:
| Q |
76 |
aaagaagctaaagaaacgatgcaagagtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaagaggaagacaa |
175 |
Q |
| |
|
|||||||| ||||||||| | ||||| ||||| || |||||||| || ||||| || |||||||| ||||| |||||||||| ||| || ||||| |||| |
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| T |
38281641 |
aaagaagcaaaagaaacggttcaagaatgtgtctctgagttcattagtttcattactggtgaagcttctgataagtgtcagagagaaaaaaggaaaacaa |
38281740 |
T |
|
| Q |
176 |
taaacggtgatgatcttgtgtgggccatgactacacttggctttgaa |
222 |
Q |
| |
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| || |||||||||||| | ||||| ||||| |||||||| |||||| |
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|
| T |
38281741 |
ttaatggtgatgatcttctttgggctatgacaacacttggttttgaa |
38281787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 41866545 - 41866735
Alignment:
| Q |
19 |
atagcaaacgtgggtaggatcatgaagaaagcgttaccggcgagagcaaagatatcgaaagaagctaaagaaacgatgcaagagtgtgtatcagagttca |
118 |
Q |
| |
|
|||||||||||| | || || |||||||| |||||||| || | || ||||| |||||||| ||||| |||||| |||| || |||||||| ||||||| |
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| T |
41866545 |
atagcaaacgtgagcagaataatgaagaaggcgttaccagcaaacgcgaagatctcgaaagatgctaaggaaacggtgcaggaatgtgtatcggagttca |
41866644 |
T |
|
| Q |
119 |
taagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaagaggaagacaataaacggtgatgatcttgtgtgggccatgactac |
209 |
Q |
| |
|
| |||||||| || |||||||| || || |||||||||| |||||| | ||||| || ||||| || ||||| | ||||| |||||||| |
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|
| T |
41866645 |
tcagcttcatcaccggtgaagcttccgataagtgtcagagagagaaacgaaagacgatcaacggcgacgatctactttgggcgatgactac |
41866735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 64 - 189
Target Start/End: Complemental strand, 39786450 - 39786325
Alignment:
| Q |
64 |
gcaaagatatcgaaagaagctaaagaaacgatgcaagagtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagaga |
163 |
Q |
| |
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||||| || |||||||| ||||||||||| |||||||||||||| |||||||| | || || |||| |||||||||||||| |||||||| || |||| |
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| T |
39786450 |
gcaaaaatctcgaaagatgctaaagaaaccatgcaagagtgtgtctcagagtttgttagttttgtaactggtgaagcatctgacaagtgtcacaaggaga |
39786351 |
T |
|
| Q |
164 |
agaggaagacaataaacggtgatgat |
189 |
Q |
| |
|
|| | |||||| | || ||||||||| |
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|
| T |
39786350 |
agcgcaagacagtgaatggtgatgat |
39786325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 11 - 189
Target Start/End: Original strand, 23569695 - 23569873
Alignment:
| Q |
11 |
ttcttcccatagcaaacgtgggtaggatcatgaagaaagcgttaccggcgagagcaaagatatcgaaagaagctaaagaaacgatgcaagagtgtgtatc |
110 |
Q |
| |
|
||||||| ||||||||||| | ||||||||||| ||||| |||| |||| || ||||| || ||||| || || ||||| | ||||||||||| || |
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|
| T |
23569695 |
ttcttccaatagcaaacgtaagcaggatcatgaaaaaagcactaccagcgaacgcgaagatctcaaaagacgcaaaggaaacagttcaagagtgtgtttc |
23569794 |
T |
|
| Q |
111 |
agagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaagaggaagacaataaacggtgatgat |
189 |
Q |
| |
|
||||||||| |||||||| || || ||||| || || |||||||| |||||| ||||||| || ||||| |||||| |
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|
| T |
23569795 |
agagttcatcagcttcatcaccggcgaagcctccgataagtgtcaacgtgagaagcggaagacgatcaacggcgatgat |
23569873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 22139957 - 22140004
Alignment:
| Q |
142 |
tctgaaaagtgtcagaaagagaagaggaagacaataaacggtgatgat |
189 |
Q |
| |
|
||||| |||||||||| ||||||||||||||| || |||||||||||| |
|
|
| T |
22139957 |
tctgataagtgtcagagagagaagaggaagacgattaacggtgatgat |
22140004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 40539347 - 40539394
Alignment:
| Q |
142 |
tctgaaaagtgtcagaaagagaagaggaagacaataaacggtgatgat |
189 |
Q |
| |
|
||||| |||||||||| ||||||||||||||| || |||||||||||| |
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|
| T |
40539347 |
tctgataagtgtcagagagagaagaggaagacgattaacggtgatgat |
40539394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0392 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0392
Description:
Target: scaffold0392; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 71 - 143
Target Start/End: Complemental strand, 14812 - 14740
Alignment:
| Q |
71 |
tatcgaaagaagctaaagaaacgatgcaagagtgtgtatcagagttcataagcttcataacaggtgaagcatc |
143 |
Q |
| |
|
||||||| ||||| || ||||| |||||||| ||||| || ||||||||||||||| | || |||||||||| |
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|
| T |
14812 |
tatcgaaggaagcaaaggaaacaatgcaagaatgtgtgtccgagttcataagcttcgtgacgagtgaagcatc |
14740 |
T |
|
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