View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10345_low_4 (Length: 447)
Name: NF10345_low_4
Description: NF10345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10345_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 108 - 441
Target Start/End: Original strand, 30015179 - 30015512
Alignment:
| Q |
108 |
tgttgaaataatgaagaggattttaggatgtggtagtaagaaaatgaacaaaactatatctgtgtttattaagattagatgaaaagtaaaatggtggtgg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30015179 |
tgttgaaataatgaagaggattttaggatgtggtagtaagaaaatgaacaaaactatatctgtgtttattaagattagatgaaaagtaaaatggtggtgg |
30015278 |
T |
|
| Q |
208 |
aaaagggtgtaacatgctgtgtcccaacacgtgtatgaatatgaattaatgttattggtggaaagatatgttaacgtttgtattgcatagcatattttgc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30015279 |
aaaagggtgtaacatgctgtgtcccaacacgtgtttgaatatgaattaatgttattggtggaaagatatgttaacgtttgtattgcatagcatattttgc |
30015378 |
T |
|
| Q |
308 |
attggttgatgagttggaaggaagaaaatttgagaaagtaatgagctgttccttccttctccatcgccacaacaataacaacaattcattcttccaccgt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
30015379 |
attggttgatgagttggaaggaagaaaatttgagaaagtaatgagctgttccttccttctccatcgcctcaacaataacaacaattctttcttccaccgt |
30015478 |
T |
|
| Q |
408 |
attatagcttctcctttcctctctgctcctcctc |
441 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
30015479 |
attatagcttctcctttcctctctgctcttcctc |
30015512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University