View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10345_low_7 (Length: 332)
Name: NF10345_low_7
Description: NF10345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10345_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 322
Target Start/End: Original strand, 7077247 - 7077550
Alignment:
| Q |
19 |
aagtggttatgtggttttagtcgaaatttagggtcttgtttgatgcttatctcagaactttggagaacatactttgctcttcttgtttgggttaaaagat |
118 |
Q |
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| T |
7077247 |
aagtggttatgtggttttagtcgaaatttagggtcttgtttgatgcttatctcggaactttggagaatatactttgctcttcttgtttgggttaaaagat |
7077346 |
T |
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| Q |
119 |
accaaacactttctcttgaatcagactcggagattgttgtgttcttggttaataatgagcgtccttcgactcatttttgctttttgattgtctctttcat |
218 |
Q |
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| T |
7077347 |
accaaacactttctcttgaatcagactcggagattgtggtgttcttggttaataatgggcgtccttcgactcatttttgctttttgattgtctctttcat |
7077446 |
T |
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| Q |
219 |
taatcgtcttatgatgaaggatcgatatataacgtttctcatatttatatgcaagcaaacccagtagcagactggcttgcgggctatgtcattcagcacc |
318 |
Q |
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| T |
7077447 |
taatcgtcttatgatgaaggaccgatatataacgtttctcataattatatgcaagcaaacccagtagcagattggcttgcgggctatgtcattcagcacc |
7077546 |
T |
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| Q |
319 |
tatg |
322 |
Q |
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|||| |
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| T |
7077547 |
tatg |
7077550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 32061323 - 32061400
Alignment:
| Q |
163 |
ttggttaataatgagcgtccttcgactcatttttgctttttgattgtctctttcattaatcgtcttatgatgaaggat |
240 |
Q |
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| T |
32061323 |
ttggttaataaggggtgtccttcgactcacccttgcttttttattgtctccctcattaatcgccttatcatgaaggat |
32061400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 31546213 - 31546290
Alignment:
| Q |
163 |
ttggttaataatgagcgtccttcgactcatttttgctttttgattgtctctttcattaatcgtcttatgatgaaggat |
240 |
Q |
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||||||||||| | | |||| |||||||||| |||||||| ||||||| |||||||| | ||||||||||||||| |
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| T |
31546213 |
ttggttaataaggggtgtccctcgactcattcttgcttttctattgtcttcctcattaattgccttatgatgaaggat |
31546290 |
T |
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