View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10345_low_8 (Length: 327)
Name: NF10345_low_8
Description: NF10345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10345_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 4 - 180
Target Start/End: Complemental strand, 7646344 - 7646166
Alignment:
| Q |
4 |
gctatcatgatttacaacatgcactaactatttgtgctaggcatcaacgataaataaattaattgatgtgttatttttaatccaaggagccaatttagat |
103 |
Q |
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| T |
7646344 |
gctatcatgatttacaacatgcactaactatttgtgctaggcatcaacgataaataaattaattgatgtgttatttttaatcgaaggagccaatttagat |
7646245 |
T |
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| Q |
104 |
tcatatgatca-nnnnnnnncattactaagacaaataaattaacaatgaaaacttagaggac-aaacaaaattaaatat |
180 |
Q |
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| T |
7646244 |
tcatatgttcatttttttttcattactaagacaaataaattaacaatgaaaacttagaggacaaaaaaaaattaaatat |
7646166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 268 - 311
Target Start/End: Complemental strand, 7646081 - 7646038
Alignment:
| Q |
268 |
tatgtgttctgagatggattaatattgtgaagggatgtgatgtc |
311 |
Q |
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| T |
7646081 |
tatgtgttctgagatggattaatattgtgaagggatgtgatgtc |
7646038 |
T |
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