View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10345_low_9 (Length: 326)

Name: NF10345_low_9
Description: NF10345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10345_low_9
NF10345_low_9
[»] chr3 (17 HSPs)
chr3 (18-317)||(9441601-9441900)
chr3 (41-317)||(9416570-9416846)
chr3 (41-303)||(9425584-9425846)
chr3 (41-303)||(9407377-9407639)
chr3 (18-310)||(9397789-9398083)
chr3 (230-300)||(9617495-9617565)
chr3 (198-300)||(41985642-41985744)
chr3 (232-300)||(9494842-9494910)
chr3 (230-275)||(9646396-9646441)
chr3 (230-270)||(9655389-9655429)
chr3 (230-300)||(41980868-41980938)
chr3 (230-275)||(9626512-9626557)
chr3 (129-169)||(9377237-9377277)
chr3 (233-300)||(9343859-9343926)
chr3 (198-300)||(9336554-9336656)
chr3 (230-300)||(9448328-9448398)
chr3 (198-270)||(9695616-9695688)
[»] chr6 (6 HSPs)
chr6 (233-273)||(7025797-7025837)
chr6 (233-273)||(7029854-7029894)
chr6 (233-273)||(7041537-7041577)
chr6 (233-300)||(7046853-7046920)
chr6 (233-273)||(9159530-9159570)
chr6 (233-273)||(9170858-9170898)
[»] chr2 (1 HSPs)
chr2 (201-300)||(20694304-20694403)
[»] chr8 (1 HSPs)
chr8 (198-295)||(44688785-44688882)
[»] chr1 (1 HSPs)
chr1 (230-270)||(4428675-4428715)


Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 9441601 - 9441900
Alignment:
Q  18 atatctgtgtgtttaaaggacaattttacttggtcgacaatactggtcggacagttgcaattgaatcagacttgagtgtccagttagtggataatccttt 117  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9441601 atatctgtgtgtttaaaggtcaattttacttggtcgacaatactggtcggacagttgcaattgaatcagactcgagtgtccagttagtggataatccttt 9441700  T
Q  118 tattcctggagatagaaaattactggtggagagtgagggcgagttgttgttagttaatatttatgagaatcttaagacttttgatgtgttcagtcttgat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  9441701 tattcctggagatagaaaattactggtggagagtgagggcgagttgttgttagttaatatttatgagaatcttaagacttttgatgtgtttagtcttgac 9441800  T
Q  218 gagaataataaaaaatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttcagccttggatatctgtg 317  Q
     |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9441801 aagaataataaaacatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttcagccttggatatgtgtg 9441900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 41 - 317
Target Start/End: Complemental strand, 9416846 - 9416570
Alignment:
Q  41 ttttacttggtcgacaatactggtcggacagttgcaattgaatcagacttgagtgtccagttagtggataatccttttattcctggagatagaaaattac 140  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||| ||||||||    
T  9416846 ttttatttggtcgacaatactggtcggacagttacaattgaatcagactcgagagtccagttagtggataatccttttattcatggagatataaaattac 9416747  T
Q  141 tggtggagagtgagggcgagttgttgttagttaatatttatgagaatcttaagacttttgatgtgttcagtcttgatgagaataataaaaaatgggtgaa 240  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||    
T  9416746 tggtggagagtgagggtgagttgttgttagttaatatttatgagaatcttaagacttttgatgtgttctgtcttgacgagaagaataaaaaatgggtgaa 9416647  T
Q  241 gttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttcagccttggatatctgtg 317  Q
    ||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  9416646 gttgacgagtttaggggatagggtgttgttcttcgtgaataaatgttcattttctgcttcagccttggatatgtgtg 9416570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 41 - 303
Target Start/End: Complemental strand, 9425846 - 9425584
Alignment:
Q  41 ttttacttggtcgacaatactggtcggacagttgcaattgaatcagacttgagtgtccagttagtggataatccttttattcctggagatagaaaattac 140  Q
    ||||||||||| ||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9425846 ttttacttggtagacaatactggtcggacagttacaattgaatccgactcgagtgtccagttagtggataatccttttattcctggagatagaaaattac 9425747  T
Q  141 tggtggagagtgagggcgagttgttgttagttaatatttatgagaatcttaagacttttgatgtgttcagtcttgatgagaataataaaaaatgggtgaa 240  Q
    |||||||||||||||| |  |||||||| |||||||||||||||||||||| ||||||| ||||||| || ||||| ||||| |||||||||||||||||    
T  9425746 tggtggagagtgagggtgccttgttgttggttaatatttatgagaatcttatgacttttaatgtgtttagacttgacgagaagaataaaaaatgggtgaa 9425647  T
Q  241 gttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttcagc 303  Q
    ||||||||||||| || |||||||||||||||||||||||  |||||||||||||||||||||    
T  9425646 gttgatgagtttaaggaatagggttttgttctttgtgaatggatgttcattttctgcttcagc 9425584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 41 - 303
Target Start/End: Complemental strand, 9407639 - 9407377
Alignment:
Q  41 ttttacttggtcgacaatactggtcggacagttgcaattgaatcagacttgagtgtccagttagtggataatccttttattcctggagatagaaaattac 140  Q
    ||||||||||||||||| ||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9407639 ttttacttggtcgacaaaactggtcggacagttacaattgaatcggactcgagtgtccagttagtggataatccttttattcatggagatagaaaattac 9407540  T
Q  141 tggtggagagtgagggcgagttgttgttagttaatatttatgagaatcttaagacttttgatgtgttcagtcttgatgagaataataaaaaatgggtgaa 240  Q
    | |||||||||||||| |  |||||||| |||||||||||||||||||||| || |||||||||||| || ||||| ||||| ||||||| |||||||||    
T  9407539 tagtggagagtgagggtgccttgttgttggttaatatttatgagaatcttatgaattttgatgtgtttagacttgacgagaagaataaaagatgggtgaa 9407440  T
Q  241 gttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttcagc 303  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  9407439 gttgatgagtttaggggatagggttttgttctttgtgaatggatgttcattttctgcttcagc 9407377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 9398083 - 9397789
Alignment:
Q  18 atatctgtgtgtttaaaggacaattttacttggtcgacaatactggtcggacagttgcaattgaatcagacttgagtgtccagttagtggataatccttt 117  Q
    |||| |||||||||||| ||   ||||||||||| |||||||||||| ||||| ||||||||||||  |||| ||||||| |||||||||||||||||||    
T  9398083 atatttgtgtgtttaaaagaaggttttacttggttgacaatactggtaggacaattgcaattgaatgggactcgagtgtctagttagtggataatccttt 9397984  T
Q  118 tattcctggagatagaaaattactggtggagagtgagggcgagttgttgttagttaatatttatgagaatcttaagacttttgatgtgttcagtcttgat 217  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||     
T  9397983 tattcctggagatagaaaattactggtggagagtgagagtgagttgttgttagttaatatttatgagaatcttaagacttttgatgtgtttagacttgac 9397884  T
Q  218 gagaataat--aaaaaatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttcagccttggat 310  Q
    |||||  ||  |||||||| ||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||| |||||||| ||||||    
T  9397883 gagaagtataaaaaaaatgcgtgaagttgatgagtttaggggatagggtcttgttctttgtgaatggatgttcattttccgcttcagctttggat 9397789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 230 - 300
Target Start/End: Original strand, 9617495 - 9617565
Alignment:
Q  230 aaatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttc 300  Q
    ||||||||||||||||  | |||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  9617495 aaatgggtgaagttgaaaaatttaggggatagggttttgttccttgtgaatggatgttcattttctgcttc 9617565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 198 - 300
Target Start/End: Complemental strand, 41985744 - 41985642
Alignment:
Q  198 ttgatgtgttcagtcttgatgagaataataaaaaatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgc 297  Q
    ||||||||||||| |||||||||||  | || |||||||| ||||||  ||||||||||||||| ||||||||||| | ||||  |||||| ||||||||    
T  41985744 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 41985645  T
Q  298 ttc 300  Q
    |||    
T  41985644 ttc 41985642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 9494842 - 9494910
Alignment:
Q  232 atgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttc 300  Q
    ||||||||| |||||||||||||||||||||||||||||||| | ||||  |||||| |||||||||||    
T  9494842 atgggtgaatttgatgagtttaggggatagggttttgttcttggggaatggatgttcgttttctgcttc 9494910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 275
Target Start/End: Original strand, 9646396 - 9646441
Alignment:
Q  230 aaatgggtgaagttgatgagtttaggggatagggttttgttctttg 275  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||    
T  9646396 aaatgggtgaagttgatgaatttaggggatagggttttgttttttg 9646441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 9655389 - 9655429
Alignment:
Q  230 aaatgggtgaagttgatgagtttaggggatagggttttgtt 270  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  9655389 aaatgggtgaagttgatgaatttaggggatagggttttgtt 9655429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 300
Target Start/End: Complemental strand, 41980938 - 41980868
Alignment:
Q  230 aaatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttc 300  Q
    |||||||| ||||||| ||||||||||||||| ||||||||||| | ||||  |||||| |||| ||||||    
T  41980938 aaatgggtcaagttgacgagtttaggggatagagttttgttcttggggaatggatgttcgttttttgcttc 41980868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 275
Target Start/End: Original strand, 9626512 - 9626557
Alignment:
Q  230 aaatgggtgaagttgatgagtttaggggatagggttttgttctttg 275  Q
    ||||||||||| ||||||| ||||||||||||||||||||| ||||    
T  9626512 aaatgggtgaatttgatgaatttaggggatagggttttgttttttg 9626557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 9377277 - 9377237
Alignment:
Q  129 atagaaaattactggtggagagtgagggcgagttgttgtta 169  Q
    |||||||||| ||||||||||||||||| ||||||||||||    
T  9377277 atagaaaattgctggtggagagtgagggtgagttgttgtta 9377237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 300
Target Start/End: Complemental strand, 9343926 - 9343859
Alignment:
Q  233 tgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttc 300  Q
    ||||||||||| |  | |||||||||||| ||||||||||| | |||| ||||||| |||||||||||    
T  9343926 tgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgcttc 9343859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 300
Target Start/End: Complemental strand, 9336656 - 9336554
Alignment:
Q  198 ttgatgtgttcagtcttgatgagaataataaaaaatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgc 297  Q
    |||||||||| || |||||||||||  | ||||  ||||| ||| ||| || |||||| |||| |||||||||||| | ||||  |||||| ||||||||    
T  9336656 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttttctgc 9336557  T
Q  298 ttc 300  Q
    |||    
T  9336556 ttc 9336554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 300
Target Start/End: Complemental strand, 9448398 - 9448328
Alignment:
Q  230 aaatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttc 300  Q
    |||||||||||||| |  | |||||||||||| ||||||||||| | |||| | ||||| |||||||||||    
T  9448398 aaatgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgactgttcgttttctgcttc 9448328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 270
Target Start/End: Original strand, 9695616 - 9695688
Alignment:
Q  198 ttgatgtgttcagtcttgatgagaataataaaaaatgggtgaagttgatgagtttaggggatagggttttgtt 270  Q
    ||||||| ||||| |||||||||||  | || || ||||| |||||||  | |||||||||||||||||||||    
T  9695616 ttgatgtattcaggcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggatagggttttgtt 9695688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 7025837 - 7025797
Alignment:
Q  233 tgggtgaagttgatgagtttaggggatagggttttgttctt 273  Q
    ||||||||||||| ||||||||| |||||||||||||||||    
T  7025837 tgggtgaagttgacgagtttaggagatagggttttgttctt 7025797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 7029894 - 7029854
Alignment:
Q  233 tgggtgaagttgatgagtttaggggatagggttttgttctt 273  Q
    ||||||||||||| |||||| ||||||||||||||||||||    
T  7029894 tgggtgaagttgacgagtttcggggatagggttttgttctt 7029854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 7041577 - 7041537
Alignment:
Q  233 tgggtgaagttgatgagtttaggggatagggttttgttctt 273  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  7041577 tgggtgaagttgactagtttaggggatagggttttgttctt 7041537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 300
Target Start/End: Complemental strand, 7046920 - 7046853
Alignment:
Q  233 tgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttc 300  Q
    ||||||||||| | ||||||||||||||  ||||||||||| | ||  |||||||| |||||||||||    
T  7046920 tgggtgaagttaacgagtttaggggataaagttttgttcttggggataaaatgttcgttttctgcttc 7046853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 9159530 - 9159570
Alignment:
Q  233 tgggtgaagttgatgagtttaggggatagggttttgttctt 273  Q
    |||||||| || | |||||||||||||||||||||||||||    
T  9159530 tgggtgaaattaacgagtttaggggatagggttttgttctt 9159570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 9170898 - 9170858
Alignment:
Q  233 tgggtgaagttgatgagtttaggggatagggttttgttctt 273  Q
    |||||||| || | |||||||||||||||||||||||||||    
T  9170898 tgggtgaaattaacgagtttaggggatagggttttgttctt 9170858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 300
Target Start/End: Original strand, 20694304 - 20694403
Alignment:
Q  201 atgtgttcagtcttgatgagaataataaaaaatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttc 300  Q
    |||||||||| |||||||| ||  | || ||||||||||  ||||  ||||| ||||||||||||||||| || | ||||  |||||| |||||||||||    
T  20694304 atgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttttctgcttc 20694403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 295
Target Start/End: Original strand, 44688785 - 44688882
Alignment:
Q  198 ttgatgtgttcagtcttgatgagaataataaaaaatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttct 295  Q
    ||||||||||||  ||  |||||||  |||| |||||||| ||||| | |||||||||| ||||  |||||||||| | |||| ||| ||||||||||    
T  44688785 ttgatgtgttcacgctcaatgagaagcataagaaatgggtaaagttaacgagtttagggaatagaattttgttcttggggaatgaatattcattttct 44688882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 4428715 - 4428675
Alignment:
Q  230 aaatgggtgaagttgatgagtttaggggatagggttttgtt 270  Q
    ||||||||||| |||| |||||| |||||||||||||||||    
T  4428715 aaatgggtgaaattgacgagtttgggggatagggttttgtt 4428675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University