View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10346_high_10 (Length: 437)
Name: NF10346_high_10
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10346_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 31298145 - 31298560
Alignment:
| Q |
1 |
tattggtatgtttgagtaacacattacacatgtaaaggataattgtgagaaattcaaaagatatgtaagagaatcattttaaattggaaaccaagaaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31298145 |
tattggtatgtttgagtaacacattacacatgtaaagaataatcgtgagaaattcaaaagatatgtaagagaatcattttaaattggaaaccaagaaatt |
31298244 |
T |
|
| Q |
101 |
ttgtggtgagtttgttgctaacaaatgattgtgtagggaaattgtaaggattacgacttatgagaatgaaaatggttgttggcctgttgcataatgttgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31298245 |
ttgtggtgagtttgttgctaacaaatgattgtgtagggaaattgtaaggattacgacttatgagaatgaaaatggttgttggcctgttgcataatgttgg |
31298344 |
T |
|
| Q |
201 |
ctctcctgtatttttctggaggttaaggacatatttaattttattagttacctccgttcttaaatataatcactcttttgtaaccaaaatatatatataa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31298345 |
ctctcctgtatttttctggaggttaaggacatatttaattttattagttacctccgttcttaaatataatcactcttttgtaaccaaaaaatatatataa |
31298444 |
T |
|
| Q |
301 |
tcactctttagataaaataataccagttgttaacaaatttaatgttattaatcatactaaagtatgcaacctattaagatcagatcagagtgcatgtgtg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31298445 |
tcactctttagataaaataataccagttgttaacaaatttaatggtattaatcatactaaagtatgcaacctattaagatcagatcagagtgcatgtgtg |
31298544 |
T |
|
| Q |
401 |
atttcatagaaaacgt |
416 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
31298545 |
atttcatagaaaacgt |
31298560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University