View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10346_high_11 (Length: 436)
Name: NF10346_high_11
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10346_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 20 - 423
Target Start/End: Complemental strand, 10432315 - 10431902
Alignment:
| Q |
20 |
accaattcacaagtcacatatttagattgcaaaacaaataataatattattgattaatttaatcacattaaaagttacatacattatacatatgcatat- |
118 |
Q |
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| T |
10432315 |
accaattcacaagtcacatatttagattgcaaaacaaataataatattattgattaatttaatcacattaaaagttacatacattatacatatgcatatg |
10432216 |
T |
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| Q |
119 |
-----caattttttcatcataattgcacttgactttcgtgaaataggaccctatgctgaattatagcaagaggttggcctgaaaagagagtgttaaattt |
213 |
Q |
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| T |
10432215 |
catatcaattttttcatcataattgcacttgactttcgtgaaataggaccctatgctgaattatagcaagaggttggcctgaaaagagagtgttaaattt |
10432116 |
T |
|
| Q |
214 |
tgaagcattgccttaaattatgaaagcaatgatcttaaacggttagacatcatgcttttatatcgacctagatatggagaaagtagtaaagaatcgttct |
313 |
Q |
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| T |
10432115 |
tgaagcattgccttaaattatgaaagcaatgatcttaaacggttagacatcatgcttttatatcgacctagatatggagaaagtagtaaagaatcgttct |
10432016 |
T |
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| Q |
314 |
atatagctgtcatgaaattgaaatgtaccttagtcatacctatcattatatatcaacttttttgcaattaaaatt----acaacatcagaaaatacacgt |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
10432015 |
atatagctgtcatgaaattgaaatgtaccttagtcatacctatcattatatatcaacttttttgcaattaaaatttacaacaacatcagaaaatacacgt |
10431916 |
T |
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| Q |
410 |
gtgacatttggttc |
423 |
Q |
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|||||||||||||| |
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| T |
10431915 |
gtgacatttggttc |
10431902 |
T |
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