View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10346_high_12 (Length: 428)
Name: NF10346_high_12
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10346_high_12 |
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| [»] scaffold0176 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 19 - 416
Target Start/End: Original strand, 38725919 - 38726316
Alignment:
| Q |
19 |
gtaatgcaccaagatcctctgctagttggagaccttcaaaataacctaatccatcgtcactccaataactgtaaacgtcgttccagtggccggatctctc |
118 |
Q |
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| T |
38725919 |
gtaatgcaccaagatcctctgctagttggagaccttcaaaataacctaatccatcgtcactccaataactgtaaacgtcgttccagtggccggatctctc |
38726018 |
T |
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| Q |
119 |
ttcccttggcccaactgtttctttccacctaaaagcatattttagactgtttccttcaacataagtaccacccaagaaccttaaaaaatttggtttcaaa |
218 |
Q |
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| T |
38726019 |
ttcccttggcccaactgtttctttccacctaaaagcatattttagactgtttccttcaacctaagtaccacccaagaaccttaaaaaatttggtttcaaa |
38726118 |
T |
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| Q |
219 |
tctgccaccattttaaaaagatcacttcgaaaaccatgacctttatatgtatccgaaggcatagctgacacttgatctaaccatatcacccctttagttt |
318 |
Q |
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| T |
38726119 |
tctgccaccattttaaaaagatcacttcgaaaaccatgaccgttatatgtatccgaaggcatagctgacacttgatctaaccttatcacccctttagttt |
38726218 |
T |
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| Q |
319 |
ttgttgttatttgtaaactagaattatgatttgtacctttagctttaataattctctccatcttactccattttgtaacattaagtccatcagcccta |
416 |
Q |
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| T |
38726219 |
ttgttgttatttgtaaactagaattatgatttgtacctttagctttaataattctctccatcttactccattttgtaacattaagtccatcagcccta |
38726316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 261 - 407
Target Start/End: Complemental strand, 29596 - 29450
Alignment:
| Q |
261 |
ttatatgtatccgaaggcatagctgacacttgatctaaccatatcacccctttagtttttgttgttatttgtaaactagaattatgatttgtacctttag |
360 |
Q |
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| T |
29596 |
ttatatgtatccaagggcatagctgacacttgatctaaccatactacccctctattgcttgttgttatttgtagacttgaattatgatttgtaccattag |
29497 |
T |
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| Q |
361 |
ctttaataattctctccatcttactccattttgtaacattaagtcca |
407 |
Q |
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| T |
29496 |
cttcaagaattgtctccatcctactccactttgtaacattaactcca |
29450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 9e-37; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 261 - 407
Target Start/End: Original strand, 34153293 - 34153439
Alignment:
| Q |
261 |
ttatatgtatccgaaggcatagctgacacttgatctaaccatatcacccctttagtttttgttgttatttgtaaactagaattatgatttgtacctttag |
360 |
Q |
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| T |
34153293 |
ttatatgtatccaagggcatagctgacacttgatctaaccatactacccctctattgcttgttgttatttgtagacttgaattatgatttgtaccattag |
34153392 |
T |
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| Q |
361 |
ctttaataattctctccatcttactccattttgtaacattaagtcca |
407 |
Q |
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| T |
34153393 |
cttcaagaattgtctccatcctactccactttgtaacattaactcca |
34153439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 261 - 407
Target Start/End: Complemental strand, 34169274 - 34169128
Alignment:
| Q |
261 |
ttatatgtatccgaaggcatagctgacacttgatctaaccatatcacccctttagtttttgttgttatttgtaaactagaattatgatttgtacctttag |
360 |
Q |
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| T |
34169274 |
ttatatgtatccaagggcatagctgacacttgatctaaccatactacccctctattgcttgttgttatttgtagacttgaattatgatttgtaccattag |
34169175 |
T |
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| Q |
361 |
ctttaataattctctccatcttactccattttgtaacattaagtcca |
407 |
Q |
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| T |
34169174 |
cttcaagaattgtctccatcctactccactttgtaacattaactcca |
34169128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 261 - 407
Target Start/End: Complemental strand, 34209484 - 34209338
Alignment:
| Q |
261 |
ttatatgtatccgaaggcatagctgacacttgatctaaccatatcacccctttagtttttgttgttatttgtaaactagaattatgatttgtacctttag |
360 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||| |||||| || | ||||||||||||||| ||| ||||||||||||||||| |||| |
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| T |
34209484 |
ttatatgtatccaagggcatagctgacacttgatctaaccatactacccctctattgcttgttgttatttgtagacttgaattatgatttgtaccattag |
34209385 |
T |
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| Q |
361 |
ctttaataattctctccatcttactccattttgtaacattaagtcca |
407 |
Q |
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| T |
34209384 |
cttcaagaattgtctccatcctactccactttgtaacattaactcca |
34209338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 34430725 - 34430672
Alignment:
| Q |
203 |
aaaatttggtttcaaatctgccaccattttaaaaagatcacttcgaaaaccatg |
256 |
Q |
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| T |
34430725 |
aaaacttggtttcaaatctaccagcatttgaagaagatcacttcggaaaccatg |
34430672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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