View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10346_high_18 (Length: 355)

Name: NF10346_high_18
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10346_high_18
NF10346_high_18
[»] chr1 (11 HSPs)
chr1 (18-107)||(1688332-1688422)
chr1 (18-58)||(42162169-42162209)
chr1 (262-345)||(938594-938677)
chr1 (18-107)||(32295519-32295609)
chr1 (26-107)||(50476421-50476503)
chr1 (18-58)||(26940531-26940571)
chr1 (18-58)||(13255269-13255309)
chr1 (18-50)||(18937257-18937289)
chr1 (18-58)||(27499909-27499949)
chr1 (18-58)||(33991466-33991506)
chr1 (18-58)||(40707314-40707354)
[»] chr8 (4 HSPs)
chr8 (18-108)||(36906061-36906152)
chr8 (18-101)||(4734612-4734696)
chr8 (76-109)||(36103070-36103103)
chr8 (18-58)||(6743-6783)
[»] chr3 (12 HSPs)
chr3 (18-107)||(3043234-3043319)
chr3 (18-108)||(36796302-36796388)
chr3 (18-58)||(38526078-38526118)
chr3 (18-108)||(41962091-41962177)
chr3 (18-58)||(44412270-44412310)
chr3 (18-58)||(47714788-47714828)
chr3 (26-58)||(17642515-17642547)
chr3 (18-58)||(30132002-30132042)
chr3 (18-58)||(31178362-31178402)
chr3 (18-58)||(33982835-33982875)
chr3 (18-58)||(34306072-34306112)
chr3 (18-58)||(43237216-43237256)
[»] chr7 (12 HSPs)
chr7 (18-58)||(36747222-36747262)
chr7 (18-105)||(33113757-33113845)
chr7 (20-50)||(4788116-4788146)
chr7 (18-105)||(23620909-23620992)
chr7 (21-58)||(30183775-30183812)
chr7 (18-58)||(3571875-3571915)
chr7 (18-58)||(3658627-3658667)
chr7 (18-58)||(33406748-33406788)
chr7 (18-58)||(33810328-33810368)
chr7 (18-58)||(34652167-34652207)
chr7 (18-54)||(43778692-43778728)
chr7 (76-108)||(43778761-43778793)
[»] chr6 (5 HSPs)
chr6 (18-58)||(1029218-1029258)
chr6 (19-107)||(26574512-26574601)
chr6 (76-109)||(4910084-4910117)
chr6 (21-54)||(34557281-34557314)
chr6 (22-58)||(26481247-26481283)
[»] chr5 (5 HSPs)
chr5 (18-58)||(27480286-27480326)
chr5 (18-58)||(41694902-41694942)
chr5 (18-102)||(17092783-17092863)
chr5 (18-58)||(1658102-1658142)
chr5 (18-58)||(38928818-38928858)
[»] chr4 (9 HSPs)
chr4 (18-58)||(38365954-38365994)
chr4 (13-53)||(50641985-50642025)
chr4 (26-103)||(13270397-13270475)
chr4 (18-109)||(37756829-37756916)
chr4 (18-105)||(48830931-48831014)
chr4 (18-58)||(16535616-16535656)
chr4 (18-58)||(32948633-32948673)
chr4 (18-58)||(38317345-38317385)
chr4 (18-58)||(41363928-41363968)
[»] chr2 (8 HSPs)
chr2 (18-58)||(36567394-36567434)
chr2 (18-105)||(30312521-30312609)
chr2 (18-53)||(44020284-44020319)
chr2 (18-105)||(44137029-44137117)
chr2 (19-57)||(8991080-8991118)
chr2 (18-58)||(10165340-10165380)
chr2 (18-58)||(12964088-12964128)
chr2 (18-58)||(18018712-18018752)


Alignment Details
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 1688332 - 1688422
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttcnnnnnnnccaaaatcct-ccctctcctccaaacttccaaacaaagcctaa 107  Q
    ||||||| |||||||| ||||||||||||||||||| ||||       |||||| ||| ||||| ||||||||||||||||||||||||||    
T  1688332 ctctcctcccaatgtcttctatttcttccacttgctccttccttttttccaaaaccctcccctcccctccaaacttccaaacaaagcctaa 1688422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 42162169 - 42162209
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  42162169 ctctccttccaatgtcatctatttcttccacttgctccttc 42162209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 345
Target Start/End: Original strand, 938594 - 938677
Alignment:
Q  262 tttacatataatgaaaatcgcaaccaagatttagtgtttttaccaattaagctaagctcatgagtgcagcttccttttcctttg 345  Q
    |||||||| |||||||||||||||| | | |||| ||  ||| ||||| ||||||||||| |||||||||||| ||||| ||||    
T  938594 tttacatagaatgaaaatcgcaacccaaacttagcgtccttatcaattgagctaagctcacgagtgcagcttctttttcttttg 938677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 32295609 - 32295519
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttcnnnnnnnccaaaatcct-ccctctcctccaaacttccaaacaaagcctaa 107  Q
    ||||||| |||||||| ||||||||||||||||||| ||||       |||||||| | ||||| |||| ||||| |||||||||||||||    
T  32295609 ctctcctcccaatgtcttctatttcttccacttgctccttctttttttccaaaatcttcccctcccctctaaactcccaaacaaagcctaa 32295519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 50476503 - 50476421
Alignment:
Q  26 ccaatgtcatctatttcttccacttgcttcttcnnnnnnnccaaaatcct-ccctctcctccaaacttccaaacaaagcctaa 107  Q
    |||||||| ||||||||||||||||||| ||||       |||||| ||| ||||| |||||||||| |||||||||||||||    
T  50476503 ccaatgtcttctatttcttccacttgctccttccttttttccaaaaccctcccctcccctccaaactcccaaacaaagcctaa 50476421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 26940571 - 26940531
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  26940571 ctctccttccaatgtcttctatttcttccacttgctccttc 26940531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 13255309 - 13255269
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    ||||||| |||||||| ||||||||||||||||||| ||||    
T  13255309 ctctcctcccaatgtcttctatttcttccacttgctccttc 13255269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 18937289 - 18937257
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccactt 50  Q
    |||||||||||||||| ||||||||||||||||    
T  18937289 ctctccttccaatgtcctctatttcttccactt 18937257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 27499949 - 27499909
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    ||||||| |||||||| ||||||||||||||||||| ||||    
T  27499949 ctctcctcccaatgtcttctatttcttccacttgctccttc 27499909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 33991506 - 33991466
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    ||||||| |||||||| ||||||||||||||||||| ||||    
T  33991506 ctctcctcccaatgtcttctatttcttccacttgctccttc 33991466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 40707314 - 40707354
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    ||||||| |||||||| ||||||||||||||||||| ||||    
T  40707314 ctctcctcccaatgtcttctatttcttccacttgctccttc 40707354  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 36906152 - 36906061
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttcnnnnnnnccaaaatcct-ccctctcctccaaacttccaaacaaagcctaag 108  Q
    ||||||| |||||||| ||||||||||||||||||| ||||       |||||| ||| ||||| |||||||||| ||||||||||||||||    
T  36906152 ctctcctcccaatgtcttctatttcttccacttgctccttccttttttccaaaaccctcccctcccctccaaactcccaaacaaagcctaag 36906061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 4734612 - 4734696
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttcnnnnnnnccaaaatcct-ccctctcctccaaacttccaaacaaa 101  Q
    ||||||| |||||||| ||||||||||||||||||| ||||       |||||| ||| ||||| |||||||||| |||||||||    
T  4734612 ctctcctcccaatgtcttctatttcttccacttgctccttccttttttccaaaaccctcccctcccctccaaactcccaaacaaa 4734696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 109
Target Start/End: Original strand, 36103070 - 36103103
Alignment:
Q  76 ccctctcctccaaacttccaaacaaagcctaaga 109  Q
    |||||||||||||||||||||||||| |||||||    
T  36103070 ccctctcctccaaacttccaaacaaaacctaaga 36103103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 6783 - 6743
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    ||||||| |||||||| ||||||||||||||||||| ||||    
T  6783 ctctcctcccaatgtcttctatttcttccacttgctccttc 6743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 3043234 - 3043319
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttcnnnnnnnccaaaatcctccctctcctccaaacttccaaacaaagcctaa 107  Q
    ||||||| |||||||| ||||||||||||||||||| ||||       ||||||||||||    |||||||||| |||||||||||||||    
T  3043234 ctctcctcccaatgtcttctatttcttccacttgctccttccttttttccaaaatcctcc----cctccaaactcccaaacaaagcctaa 3043319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 36796388 - 36796302
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttcnnnnnnnccaaaatcctccctctcctccaaacttccaaacaaagcctaag 108  Q
    ||||||| |||||||| ||||||||||||||||||| ||||       ||||||    ||||| |||||||||| ||||||||||||||||    
T  36796388 ctctcctcccaatgtcttctatttcttccacttgctccttccttttttccaaaa----ccctcccctccaaactcccaaacaaagcctaag 36796302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 38526118 - 38526078
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    |||||||||||||||| |||||||||||||||| |||||||    
T  38526118 ctctccttccaatgtcttctatttcttccacttacttcttc 38526078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 41962091 - 41962177
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttcnnnnnnnccaaaatcctccctctcctccaaacttccaaacaaagcctaag 108  Q
    ||||||| |||||||| ||||||||||||||||||| ||||       ||||||    ||||| |||||||||| ||||||||||||||||    
T  41962091 ctctcctcccaatgtcttctatttcttccacttgctccttccttttttccaaaa----ccctcccctccaaactcccaaacaaagcctaag 41962177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 44412270 - 44412310
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  44412270 ctctccttccaatgtcttctatttcttccacttgctccttc 44412310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 47714788 - 47714828
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  47714788 ctctccttccaatgtcttctatttcttccacttgctccttc 47714828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 17642547 - 17642515
Alignment:
Q  26 ccaatgtcatctatttcttccacttgcttcttc 58  Q
    |||||||| ||||||||||||||||||||||||    
T  17642547 ccaatgtcttctatttcttccacttgcttcttc 17642515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 30132002 - 30132042
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    ||||||| |||||||| ||||||||||||||||||| ||||    
T  30132002 ctctcctcccaatgtcttctatttcttccacttgctccttc 30132042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 31178362 - 31178402
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    |||||||||||||||| ||||||||||||| || |||||||    
T  31178362 ctctccttccaatgtcttctatttcttccatttacttcttc 31178402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 33982835 - 33982875
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    ||||||| |||||||| ||||||||||||||||||| ||||    
T  33982835 ctctcctcccaatgtcttctatttcttccacttgctccttc 33982875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 34306112 - 34306072
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    ||||||| |||||||| ||||||||||||||||||| ||||    
T  34306112 ctctcctcccaatgtcttctatttcttccacttgctccttc 34306072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 43237256 - 43237216
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    ||||||| |||||||| ||||||||||||||||||| ||||    
T  43237256 ctctcctcccaatgtcttctatttcttccacttgctccttc 43237216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 36747262 - 36747222
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  36747262 ctctccttccaatgtcttctatttcttccacttgctccttc 36747222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 33113757 - 33113845
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttcnnnnnnnccaaaatcct-ccctctcctccaaacttccaaacaaagcct 105  Q
    ||||||| |||||||| ||||||||||||||||||| ||||       | |||| ||| ||||| |||||||||| |||||||||||||    
T  33113757 ctctcctcccaatgtcttctatttcttccacttgctccttccttttttctaaaaccctcccctcccctccaaactcccaaacaaagcct 33113845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 50
Target Start/End: Original strand, 4788116 - 4788146
Alignment:
Q  20 ctccttccaatgtcatctatttcttccactt 50  Q
    |||||||||||||||||||||||||||||||    
T  4788116 ctccttccaatgtcatctatttcttccactt 4788146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 23620909 - 23620992
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttcnnnnnnnccaaaatcctccctctcctccaaacttccaaacaaagcct 105  Q
    ||||||| |||||||| ||||||||||||||||||| ||||       |||||| |||||||    |||||||| |||||||||||||    
T  23620909 ctctcctcccaatgtcttctatttcttccacttgctccttccttttttccaaaaccctccct----tccaaactcccaaacaaagcct 23620992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 30183812 - 30183775
Alignment:
Q  21 tccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  30183812 tccttccaaagtcatctatttcttccacttgctccttc 30183775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 3571875 - 3571915
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    ||||| |||||||||| ||||||||||||||||||| ||||    
T  3571875 ctctctttccaatgtcttctatttcttccacttgctccttc 3571915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 3658627 - 3658667
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    ||||||| |||||||| ||||||||||||||||||| ||||    
T  3658627 ctctcctcccaatgtcttctatttcttccacttgctccttc 3658667  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 33406748 - 33406788
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    ||||||| |||||||| ||||||||||||||||||| ||||    
T  33406748 ctctcctcccaatgtcttctatttcttccacttgctccttc 33406788  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 33810328 - 33810368
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    ||||||| |||||||| |||||||||||||||| |||||||    
T  33810328 ctctcctcccaatgtcttctatttcttccacttacttcttc 33810368  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 34652167 - 34652207
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    ||||||| |||||||| ||||||||||||||||||| ||||    
T  34652167 ctctcctcccaatgtcttctatttcttccacttgctccttc 34652207  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 43778692 - 43778728
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgctt 54  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  43778692 ctcttcttccaatgtcttctatttcttccacttgctt 43778728  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 108
Target Start/End: Original strand, 43778761 - 43778793
Alignment:
Q  76 ccctctcctccaaacttccaaacaaagcctaag 108  Q
    ||||| |||||||||||||||||||||||||||    
T  43778761 ccctcccctccaaacttccaaacaaagcctaag 43778793  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 1029258 - 1029218
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  1029258 ctctccttccaatgtcttctatttcttccacttgctccttc 1029218  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 26574512 - 26574601
Alignment:
Q  19 tctccttccaatgtcatctatttcttccacttgcttcttcnnnnnnnccaaaatcct-ccctctcctccaaacttccaaacaaagcctaa 107  Q
    ||||||||||||||| ||||||||||||||||||| ||||       |||||| ||| ||||| ||||||||||  ||||||||| ||||    
T  26574512 tctccttccaatgtcttctatttcttccacttgctccttccttttttccaaaaccctcccctcccctccaaactctcaaacaaagtctaa 26574601  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 109
Target Start/End: Original strand, 4910084 - 4910117
Alignment:
Q  76 ccctctcctccaaacttccaaacaaagcctaaga 109  Q
    ||||| ||||||||||||||||||||||||||||    
T  4910084 ccctcccctccaaacttccaaacaaagcctaaga 4910117  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 34557281 - 34557314
Alignment:
Q  21 tccttccaatgtcatctatttcttccacttgctt 54  Q
    ||||| ||||||||||||||||||||||||||||    
T  34557281 tcctttcaatgtcatctatttcttccacttgctt 34557314  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 26481247 - 26481283
Alignment:
Q  22 ccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  26481247 ccttccaatgtcttctatttcttccacttgctacttc 26481283  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 27480286 - 27480326
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    ||||||| |||||||| ||||||||||||||||||||||||    
T  27480286 ctctcctcccaatgtcttctatttcttccacttgcttcttc 27480326  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 41694942 - 41694902
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  41694942 ctctccttccaatgtcttctatttcttccacttgctccttc 41694902  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 17092863 - 17092783
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttcnnnnnnnccaaaatcctccctctcctccaaacttccaaacaaag 102  Q
    |||||||||||||||| ||||| ||||||||||||| ||||       ||||||    ||||| |||||||||||||||||||||    
T  17092863 ctctccttccaatgtcttctatatcttccacttgctccttctttttttccaaaa----ccctcccctccaaacttccaaacaaag 17092783  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 1658142 - 1658102
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    ||||||| |||||||| ||||||||||||||||||| ||||    
T  1658142 ctctcctcccaatgtcttctatttcttccacttgctccttc 1658102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 38928818 - 38928858
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    ||||| |||||||||| ||||||||||||||||||| ||||    
T  38928818 ctctcattccaatgtcttctatttcttccacttgctccttc 38928858  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 38365994 - 38365954
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  38365994 ctctccttccaatgtcttctatttcttccacttgctccttc 38365954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 50642025 - 50641985
Alignment:
Q  13 catcactctccttccaatgtcatctatttcttccacttgct 53  Q
    |||| |||||||||||||||| |||||||||||||||||||    
T  50642025 catccctctccttccaatgtcttctatttcttccacttgct 50641985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 13270397 - 13270475
Alignment:
Q  26 ccaatgtcatctatttcttccacttgcttcttcnnnnnnnccaaaatcct-ccctctcctccaaacttccaaacaaagc 103  Q
    |||||||| ||||||||||||||||||| ||||       |||||| ||| ||||| |||||||||| |||||||||||    
T  13270397 ccaatgtcttctatttcttccacttgctccttccttttttccaaaaccctcccctcccctccaaactcccaaacaaagc 13270475  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 37756829 - 37756916
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttcnnnnnnnccaaaatcctccctctcctccaaacttccaaacaaagcctaaga 109  Q
    ||||||| |||||||| ||||||||||||||||||| ||||       ||||||||||||    | ||||||||  ||||||||||||||||    
T  37756829 ctctcctcccaatgtcttctatttcttccacttgctccttccttttttccaaaatcctcc----catccaaactctcaaacaaagcctaaga 37756916  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 48830931 - 48831014
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttcnnnnnnnccaaaatcctccctctcctccaaacttccaaacaaagcct 105  Q
    ||||||| |||||||| ||||||||||||||||||| ||||       ||||||    ||||| |||||||||| |||||||||||||    
T  48830931 ctctcctcccaatgtcttctatttcttccacttgctccttccttttttccaaaa----ccctcccctccaaactcccaaacaaagcct 48831014  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 16535656 - 16535616
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    ||||||| |||||||| ||||||||||||||||||| ||||    
T  16535656 ctctcctcccaatgtcttctatttcttccacttgctccttc 16535616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 32948633 - 32948673
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    |||||||||||||||| |||||||||| |||||||| ||||    
T  32948633 ctctccttccaatgtcttctatttctttcacttgctccttc 32948673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 38317345 - 38317385
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    ||||||| |||||||| ||||||||||||||||||| ||||    
T  38317345 ctctcctcccaatgtcttctatttcttccacttgctccttc 38317385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 41363928 - 41363968
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    ||||||| |||||||| ||||||||||||||||||| ||||    
T  41363928 ctctcctcccaatgtcttctatttcttccacttgctccttc 41363968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 36567394 - 36567434
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  36567394 ctctccttccaatgtcttctatttcttccacttgctccttc 36567434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 30312521 - 30312609
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttcnnnnnnnccaaaatcct-ccctctcctccaaacttccaaacaaagcct 105  Q
    ||||||| |||||||  ||||||||||||||||||| ||||       |||||| ||| ||||| |||||||||| |||||||||||||    
T  30312521 ctctcctcccaatgtgttctatttcttccacttgctccttccttttttccaaaaccctcccctcccctccaaactcccaaacaaagcct 30312609  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 44020319 - 44020284
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgct 53  Q
    |||||||||||||||| |||||||||||||||||||    
T  44020319 ctctccttccaatgtcttctatttcttccacttgct 44020284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 44137117 - 44137029
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttcnnnnnnnccaaaatcct-ccctctcctccaaacttccaaacaaagcct 105  Q
    ||||||| |||||||| ||||||||||||| ||||| ||||       |||||| ||| ||||| |||||||||| |||||||||||||    
T  44137117 ctctcctcccaatgtcttctatttcttccatttgctccttccttttttccaaaaccctcccctcccctccaaactcccaaacaaagcct 44137029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 8991080 - 8991118
Alignment:
Q  19 tctccttccaatgtcatctatttcttccacttgcttctt 57  Q
    ||||||||||||||| |||||||||||||||| ||||||    
T  8991080 tctccttccaatgtcttctatttcttccacttccttctt 8991118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 10165380 - 10165340
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    ||||||| |||||||| ||||||| ||||||||||||||||    
T  10165380 ctctcctcccaatgtcttctattttttccacttgcttcttc 10165340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 12964088 - 12964128
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    ||||||| |||||||| ||||||||||||||||||| ||||    
T  12964088 ctctcctcccaatgtcttctatttcttccacttgctccttc 12964128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 18018712 - 18018752
Alignment:
Q  18 ctctccttccaatgtcatctatttcttccacttgcttcttc 58  Q
    ||||||| |||||||| |||||||||| |||||||||||||    
T  18018712 ctctcctcccaatgtcttctatttctttcacttgcttcttc 18018752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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