View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10346_high_23 (Length: 329)

Name: NF10346_high_23
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10346_high_23
NF10346_high_23
[»] chr1 (7 HSPs)
chr1 (105-203)||(7277270-7277368)
chr1 (248-311)||(4203258-4203321)
chr1 (19-64)||(4203377-4203422)
chr1 (162-205)||(4203322-4203365)
chr1 (125-184)||(24361088-24361147)
chr1 (105-140)||(7277196-7277231)
chr1 (111-140)||(4203351-4203380)
[»] chr3 (5 HSPs)
chr3 (125-200)||(421507-421582)
chr3 (128-184)||(404511-404567)
chr3 (124-171)||(6455955-6456004)
chr3 (124-171)||(6760843-6760892)
chr3 (73-110)||(6456004-6456041)
[»] chr6 (1 HSPs)
chr6 (125-184)||(24181015-24181074)
[»] chr7 (1 HSPs)
chr7 (18-77)||(39675835-39675893)


Alignment Details
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 7277270 - 7277368
Alignment:
Q  105 gtggctaattgattctaaatggctgcggaaggaagagaaatgatgggtggaaaataagctgcggaaggaagataaactgaggcgcgatgaccgattcta 203  Q
    |||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||    
T  7277270 gtggctgattgattctaaatggctgcggaaggaagagaaacggtgggtggaaaataagctgcgaaaggaagataacctgaagcgcgatgaccgattcta 7277368  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 248 - 311
Target Start/End: Complemental strand, 4203321 - 4203258
Alignment:
Q  248 aatatttaatgtacgaggttgtcgttttccggatatataattatcttctgtgtgtatactacca 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4203321 aatatttaatgtacgaggttgtcgttttccggatatataattatcttctgtgtgtatactacca 4203258  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 4203422 - 4203377
Alignment:
Q  19 aagaaggagaagatgagggtgtagaggaagaaggggatttccaatt 64  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  4203422 aagaaggaaaagatgagggtgtagaggaagaaggggatttccaatt 4203377  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 4203365 - 4203322
Alignment:
Q  162 gctgcggaaggaagataaactgaggcgcgatgaccgattctaaa 205  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  4203365 gctgcggaaggaagataaactgaagcgcgatgaccgattctaaa 4203322  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 184
Target Start/End: Original strand, 24361088 - 24361147
Alignment:
Q  125 ggctgcggaaggaagagaaatgatgggtggaaaataagctgcggaaggaagataaactga 184  Q
    |||||||||||||||||||| | ||| |||||||||||||||||| | |||| |||||||    
T  24361088 ggctgcggaaggaagagaaacggtggctggaaaataagctgcggaggaaagagaaactga 24361147  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 140
Target Start/End: Original strand, 7277196 - 7277231
Alignment:
Q  105 gtggctaattgattctaaatggctgcggaaggaaga 140  Q
    |||||| |||||||||||||||||||||||||||||    
T  7277196 gtggctgattgattctaaatggctgcggaaggaaga 7277231  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 140
Target Start/End: Complemental strand, 4203380 - 4203351
Alignment:
Q  111 aattgattctaaatggctgcggaaggaaga 140  Q
    ||||||||||||||||||||||||||||||    
T  4203380 aattgattctaaatggctgcggaaggaaga 4203351  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 200
Target Start/End: Original strand, 421507 - 421582
Alignment:
Q  125 ggctgcggaaggaagagaaatgatgggtggaaaataagctgcggaaggaagataaactgaggcgcgatgaccgatt 200  Q
    |||||||||||||||||||| | ||| |||||||||||||||||| | |||| ||||||| | |||||||| ||||    
T  421507 ggctgcggaaggaagagaaacggtggctggaaaataagctgcggaggaaagagaaactgaagtgcgatgactgatt 421582  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 404567 - 404511
Alignment:
Q  128 tgcggaaggaagagaaatgatgggtggaaaataagctgcggaaggaagataaactga 184  Q
    ||||||||||||||||| | ||| |||||||||||||||||| | |||| |||||||    
T  404567 tgcggaaggaagagaaacggtggctggaaaataagctgcggaggaaagagaaactga 404511  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 171
Target Start/End: Complemental strand, 6456004 - 6455955
Alignment:
Q  124 tggctgcggaaggaagagaaatgatggg--tggaaaataagctgcggaag 171  Q
    |||| |||||||||||||||||| ||||  ||||||||||||||||||||    
T  6456004 tggcagcggaaggaagagaaatggtgggtttggaaaataagctgcggaag 6455955  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 171
Target Start/End: Original strand, 6760843 - 6760892
Alignment:
Q  124 tggctgcggaaggaagagaaatgatggg--tggaaaataagctgcggaag 171  Q
    |||| |||||||||||||||||| ||||  ||||||||||||||||||||    
T  6760843 tggcagcggaaggaagagaaatggtgggtttggaaaataagctgcggaag 6760892  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 6456041 - 6456004
Alignment:
Q  73 gaacacgaatatggagctatagttccggcacggtggct 110  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  6456041 gaacacaaatatggagctataattccggcacggtggct 6456004  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 184
Target Start/End: Complemental strand, 24181074 - 24181015
Alignment:
Q  125 ggctgcggaaggaagagaaatgatgggtggaaaataagctgcggaaggaagataaactga 184  Q
    |||||||||||||||||||| | ||| |||||||||||||||||| | |||| |||||||    
T  24181074 ggctgcggaaggaagagaaacggtggctggaaaataagctgcggaggaaagagaaactga 24181015  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 39675893 - 39675835
Alignment:
Q  18 gaagaaggagaagatgagggtgtagaggaagaaggggattt-ccaattttaagaatgaaca 77  Q
    |||||||||||||||| |  ||| ||||||||||||||||| |||||||||||| ||||||    
T  39675893 gaagaaggagaagatgtg--tgtcgaggaagaaggggattttccaattttaagagtgaaca 39675835  T

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