View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10346_high_27 (Length: 314)

Name: NF10346_high_27
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10346_high_27
NF10346_high_27
[»] chr8 (1 HSPs)
chr8 (19-304)||(34650065-34650350)


Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 304
Target Start/End: Complemental strand, 34650350 - 34650065
Alignment:
Q  19 gacagtaccttcaacggttccaacagcagatctcaaaggtcctgagttttgttttgcatagtcatacagactcgacatgcaaacaaaagcatgaatagca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34650350 gacagtaccttcaacggttccaacagcagatctcaaaggtcctgagttttgttttgcatagtcatacagactcgacatgcaaacaaaagcatgaatagca 34650251  T
Q  119 gcaattctcacaaacccaagatgcttcagtttttcatgatcatttctctctacatccatctgcacaaattcaatgtataataaattattagatgagatct 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34650250 gcaattctcacaaacccaagatgcttcagtttttcatgatcatttctctctacatccatctgcacaaattcaatgtataataaattattagatgagatct 34650151  T
Q  219 atattattattatagtaatatacgtgcat---tcatcatgcaatgtaaattaacctgtttggtggtggtcattgcttcctttgtctgtg 304  Q
    ||||||   ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  34650150 atatta---ttatagtaatatacgtgcattcatcatcatgcaatgtaaattaacctgtttggtggtggtcattgtttcctttgtttgtg 34650065  T

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