View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10346_high_28 (Length: 305)
Name: NF10346_high_28
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10346_high_28 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 14 - 289
Target Start/End: Original strand, 2814653 - 2814928
Alignment:
| Q |
14 |
agatgcacaataatatttgtctgatatagatgatgattttcaaaataacgaataccggaaaaccttaatgtacatcatcctaacttaaccacttgactga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2814653 |
agatgcacaataatatttgtctgatatagatgatgattttcaaaataacgaataccggaaaaccttaatgtacatcatcctaacttaaccacttgactga |
2814752 |
T |
|
| Q |
114 |
accgtatctaaagttcaagagatcatgtgcataaggaacatcaagactccccattacaaagtctgatctcatatgctccgggaacataactcggttcaac |
213 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2814753 |
accgtatctaaagttcaagagatcacgtgcataaggaacatcaagactccccattacaaagtctgatctcatatgctccgggaacataactcggttcaac |
2814852 |
T |
|
| Q |
214 |
tttttaaacaacggaggagaatgttttggatatacgatctactcactataacgatccttcacttggatgacgaatc |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2814853 |
tttttaaacaacggaggagaatgttttggatatacaatctactcactataacgatccttcacttggatgacgaatc |
2814928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 14 - 227
Target Start/End: Original strand, 4641929 - 4642142
Alignment:
| Q |
14 |
agatgcacaataatatttgtctgatatagatgatgattttcaaaataacgaataccggaaaaccttaatgtacatcatcctaacttaaccacttgactga |
113 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||||||||| |||||| |||| |||| ||| ||||||||| || || ||||||| | |
|
|
| T |
4641929 |
agatgcacggtaatatttgtttgatatagatgatgattttcaaaataattaataccaaaaaatcttattgtgcatcatcctcacaaaaaaacttgacaaa |
4642028 |
T |
|
| Q |
114 |
accgtatctaaagttcaagagatcatgtgcataaggaacatcaagactccccattacaaagtctgatctcatatgctccgggaacataactcggttcaac |
213 |
Q |
| |
|
|| ||| |||||||| ||||||||||||||||||||| |||||| || |||||||||| ||| |||||||||| | ||||||| |||||| || |
|
|
| T |
4642029 |
actatatgtaaagttcctaagatcatgtgcataaggaacaggaagacttccaattacaaagtacaatcccatatgctcctgaaacataattcggtttaat |
4642128 |
T |
|
| Q |
214 |
tttttaaacaacgg |
227 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
4642129 |
ctttgaaacaacgg |
4642142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 14 - 289
Target Start/End: Original strand, 5563280 - 5563560
Alignment:
| Q |
14 |
agatgcacaataatatttgtctgatatagatgatgattttcaaaataacgaataccggaaaaccttaatgtacatcatcctaacttaaccacttgactg- |
112 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||| | | ||||||||||||| || ||| ||||| | | |
|
|
| T |
5563280 |
agatgcacaataatatttgtttgatatagatgatgattttcaaaataactaatacaagaaaatccaattgtacatcatccttacataaatacttggcagg |
5563379 |
T |
|
| Q |
113 |
---aaccgtatctaaagttcaagagatcatgtgcataaggaacatcaagactccccattacaaagtctgatctcatatgctccgggaacataactc-ggt |
208 |
Q |
| |
|
|||||||| |||||||| ||| |||| ||||||||||||| |||||||||||||||||||| ||| ||| ||||||| ||||||| || ||| |
|
|
| T |
5563380 |
cagaaccgtatgtaaagttcctgagttcatatgcataaggaacaggaagactccccattacaaagtacaatcccatcagctccggaaacataaatcaggt |
5563479 |
T |
|
| Q |
209 |
tcaactttttaaacaacggaggagaatgttttggatatacgatctactcactataacgatccttcacttggatgacgaatc |
289 |
Q |
| |
|
|||| ||| |||||||| | ||||||||||||| ||||||| ||||| |||| |||||||||||||||||||||||| |
|
|
| T |
5563480 |
tcaatctttgaaacaacgacatataatgttttggatacacgatctcctcaccataatgatccttcacttggatgacgaatc |
5563560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 14 - 289
Target Start/End: Complemental strand, 7852794 - 7852515
Alignment:
| Q |
14 |
agatgcacaataatatttgtctgatatagatgatgattttcaaaataacgaataccggaaaaccttaatgtacatcatcctaacttaaccacttgactg- |
112 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||||||||||||| |||||| |||| | ||||||||||||| | ||| ||||| | | |
|
|
| T |
7852794 |
agatgcacagtaatatttgtttgatatagatgatgattttcaaaataactaataccaaaaaattcaattgtacatcatcctcccataaatacttggcagg |
7852695 |
T |
|
| Q |
113 |
---aaccgtatctaaagttcaagagatcatgtgcataaggaacatcaagactccccattacaaagtctgatctcatatgctccgggaacataactcggtt |
209 |
Q |
| |
|
||| |||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||| ||| || ||| ||||||| |||||| |
|
|
| T |
7852694 |
cagaactgtatgtaaagttcatgagatcatgtgcataaggaacataaagactccccattacaaagtacaatcccatcagcgtcggaaacataagtcggtt |
7852595 |
T |
|
| Q |
210 |
caactttttaaacaacggaggagaatgttttggatatacgatctactcactataacgatccttcacttggatgacgaatc |
289 |
Q |
| |
|
||| ||| |||||||| | ||||||||||||| ||||||| ||||| |||| |||||||||||||||||||||||| |
|
|
| T |
7852594 |
caatctttgaaacaacgacaaataatgttttggatacacgatctcctcaccataatgatccttcacttggatgacgaatc |
7852515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University