View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10346_high_3 (Length: 745)
Name: NF10346_high_3
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10346_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 144 - 441
Target Start/End: Original strand, 44204025 - 44204322
Alignment:
| Q |
144 |
gttttcttacacatagacagtagtacctaaagcacagagctattcaaacacaaaatgagagaatatttatactacaacttagagattaatcacacctttc |
243 |
Q |
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| T |
44204025 |
gttttcttacacatagacagtagtacctaaagcacagagttattcaaacacaaaatgagagaatatttatactacaacttagagattaatcacacctttc |
44204124 |
T |
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| Q |
244 |
ccatatgcctaacaaaattaaaggaatagccatggcagcatcatgattcattgctaacttagtgtattgtgagagcaatgtttatacagcttttcttcaa |
343 |
Q |
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| T |
44204125 |
ccatatgcctaacaaaattaaaggaatagccatagcagcatcatgattcattgctaacttagtgtattgtgagagcaatgtttatacagcttttcttcaa |
44204224 |
T |
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| Q |
344 |
tcattaataatccttttctcacctacaaatgtaaaattcaacccaactctaagccaagaacaattctcatcttattcaaggctacttaaattttgcat |
441 |
Q |
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| T |
44204225 |
tcattaataatccttttctcacctacaaatgtaaaattcaacccaactctaagccaagaacaattctcatcttattcaaggctacttaaattttgcat |
44204322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 494 - 732
Target Start/End: Original strand, 44204987 - 44205224
Alignment:
| Q |
494 |
ctttcctttccaccaggaatagggagaatatctttgaaagcaagtgaagtgattgagttcaagtgtttaatgagctccatccaccaaagtatgaattgtt |
593 |
Q |
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| T |
44204987 |
ctttcctttccactaggaatagggagaatatctttgaaagcaagtgaagtgattgagttcaagtgtttaatgagctcca----ccaaagtatgaattgtt |
44205082 |
T |
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| Q |
594 |
caggacaactgagttcgattttttggtgaaacaatttcttgatcacctcacaaccaagagaataccttcgcaa---ttttacttcattcttaaactagca |
690 |
Q |
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| T |
44205083 |
caggacaactgagttcaattttttggtgaaacaatttcttgatcacctcacagccgagagaataccttcgcaatttttttacttcattcttaaactagca |
44205182 |
T |
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| Q |
691 |
ggagcaacattttgatttttgtctgctagatatgttacagct |
732 |
Q |
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| T |
44205183 |
ggagcaacattttgatttttgtctgctagatatgttacagct |
44205224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 44203056 - 44203217
Alignment:
| Q |
1 |
tttattagtaaactctaattactatgtcaaatatttgaaccttttcaaaatgatgcgaaaaaatagttgatgcataatcctttcttttatacacttaaac |
100 |
Q |
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| T |
44203056 |
tttattagtaaactctaattactatgtcaaatatttgaaccttttcaaaatgatgcgaaaaaatagttgatgcataatcctttcttttatacacttaaac |
44203155 |
T |
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| Q |
101 |
--------------ctaaattgatactcttatactgctgatgtaaaatgaatgtttcgtttt |
148 |
Q |
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| T |
44203156 |
taggagatataaagctaaattgatactcttatactgctgatgtaaaatgaatgtttcgtttt |
44203217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 433 - 501
Target Start/End: Original strand, 44204884 - 44204952
Alignment:
| Q |
433 |
attttgcattatcattttccttgtgtgtggaaactggaaaatacattaagttaatttactcctttcctt |
501 |
Q |
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| T |
44204884 |
attttgcattatccttttccttgtgtgtggaaactggaaaatacattaagttaatttactcctttcctt |
44204952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 44191774 - 44191873
Alignment:
| Q |
1 |
tttattagtaaactctaattactatgtcaaatatttgaaccttttcaaaatgatgcgaaaaaatagttgatgcataatcctttcttttatacacttaaac |
100 |
Q |
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| T |
44191774 |
tttattagtaaactcaaagtactttgtcaaatatttgaaccttttcaaactgatgtgaacaatttgctgatgcataatcctttcttttatacacgtaaac |
44191873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 366 - 422
Target Start/End: Complemental strand, 31652284 - 31652228
Alignment:
| Q |
366 |
ctacaaatgtaaaattcaacccaactctaagccaagaacaattctcatcttattcaa |
422 |
Q |
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| T |
31652284 |
ctacaaatttaaagttcaacacaactctaagccaacaaaaattcccatcttattcaa |
31652228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 370 - 409
Target Start/End: Complemental strand, 8723134 - 8723095
Alignment:
| Q |
370 |
aaatgtaaaattcaacccaactctaagccaagaacaattc |
409 |
Q |
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| T |
8723134 |
aaatgtaaagttcaacacaactctaagccaagaacaattc |
8723095 |
T |
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