View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10346_high_38 (Length: 252)
Name: NF10346_high_38
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10346_high_38 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 237
Target Start/End: Complemental strand, 6732680 - 6732464
Alignment:
| Q |
15 |
agcagagatgtttagtacaaaacaataaataaaacgtgaacgcggaacaagtacgacaaaaccaagaaactacaacgaaatgtaggcaaaggtaaagtgg |
114 |
Q |
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| T |
6732680 |
agcagaaatgtttagtacaaaacaataaataaaacgtgaacgcggaactagtacgacaaaaccaagaaactacaacgaaatgtaggcaaaggtaaagtgg |
6732581 |
T |
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| Q |
115 |
ggtaaaatgaataccaaaaatcacaatctctatctataaataacttgagttcatgagttttctttctcatccaatgctagaaaacatttgtttgattcca |
214 |
Q |
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| T |
6732580 |
ggtaaaatgaagaccaaaaatcacaatctctatctataaataacttgagttgatgagttttttttttc-tcaa-----aacatacatttgtttgattcca |
6732487 |
T |
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| Q |
215 |
caaaaacaacaaaacacattatt |
237 |
Q |
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| T |
6732486 |
caaaaacaacaaaacacattatt |
6732464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 6763561 - 6763494
Alignment:
| Q |
147 |
tctataaataacttgagttcatgagttttctttctcatccaatgctagaaaacatttgtttgattccac |
215 |
Q |
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| T |
6763561 |
tctataaataacttgagttcatgtgttttctt-ctcatccaatgctagaaaacatttgtttgattccac |
6763494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 204
Target Start/End: Complemental strand, 6762964 - 6762904
Alignment:
| Q |
147 |
tctataaataacttgagttcatgagttttctttctcatccaatgc---tagaaaacatttg |
204 |
Q |
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|||||||||||||||||||||| |||||| |||||||||| |||| ||||||||||||| |
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| T |
6762964 |
tctataaataacttgagttcattagttttttttctcatccgatgctcgtagaaaacatttg |
6762904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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