View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10346_high_50 (Length: 230)

Name: NF10346_high_50
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10346_high_50
NF10346_high_50
[»] chr3 (5 HSPs)
chr3 (1-96)||(29555247-29555342)
chr3 (95-166)||(29555212-29555283)
chr3 (164-211)||(30801648-30801695)
chr3 (167-211)||(35965700-35965744)
chr3 (164-211)||(20764830-20764877)
[»] scaffold0110 (1 HSPs)
scaffold0110 (165-211)||(8779-8825)
[»] chr5 (1 HSPs)
chr5 (165-211)||(2177502-2177548)
[»] chr8 (2 HSPs)
chr8 (167-211)||(10284549-10284593)
chr8 (166-204)||(20074869-20074907)
[»] chr2 (2 HSPs)
chr2 (164-211)||(41758725-41758772)
chr2 (164-204)||(33436346-33436386)
[»] chr1 (1 HSPs)
chr1 (164-211)||(45044475-45044522)
[»] chr7 (2 HSPs)
chr7 (166-211)||(21234539-21234584)
chr7 (167-211)||(46033719-46033763)
[»] chr6 (2 HSPs)
chr6 (167-211)||(22421997-22422041)
chr6 (167-211)||(31976386-31976430)


Alignment Details
Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 29555342 - 29555247
Alignment:
Q  1 caatgagagacaaacaaaaaactgacccaagccacaccaaatcaattagcttttcaccaaatacaatagaaccgtatcgtgttgtccaaataccaa 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29555342 caatgagagacaaacaaaaaactgacccaagccacaccaaatcaattagcttttcaccaaatacaatagaaccgtatcgtgttgtccaaataccaa 29555247  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 29555283 - 29555212
Alignment:
Q  95 aatacaatagaacagtatcgtgttgtccaaataccaagagaacaaacccaataaatgagactatccatcaaa 166  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29555283 aatacaatagaaccgtatcgtgttgtccaaataccaagagaacaaacccaataaatgaaactatccatcaaa 29555212  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 30801648 - 30801695
Alignment:
Q  164 aaaggaaaatgttacgtagacacattttattcttatacacccttgtac 211  Q
    ||||||||||||||| ||||||| ||||||||| ||||||||||||||    
T  30801648 aaaggaaaatgttacatagacaccttttattctcatacacccttgtac 30801695  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 35965700 - 35965744
Alignment:
Q  167 ggaaaatgttacgtagacacattttattcttatacacccttgtac 211  Q
    |||||||||||| ||||||| ||||||||| ||||||||||||||    
T  35965700 ggaaaatgttacatagacaccttttattctcatacacccttgtac 35965744  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 20764830 - 20764877
Alignment:
Q  164 aaaggaaaatgttacgtagacacattttattcttatacacccttgtac 211  Q
    ||||||||||||||| |||||||  |||||||| ||||||||||||||    
T  20764830 aaaggaaaatgttacatagacaccatttattctcatacacccttgtac 20764877  T

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Target: scaffold0110 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 8779 - 8825
Alignment:
Q  165 aaggaaaatgttacgtagacacattttattcttatacacccttgtac 211  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||    
T  8779 aaggaaaatgttacatagacaccttttattcttatacacccttgtac 8825  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 2177548 - 2177502
Alignment:
Q  165 aaggaaaatgttacgtagacacattttattcttatacacccttgtac 211  Q
    ||||||||||||||  |||||||||||||||| ||||||||||||||    
T  2177548 aaggaaaatgttacagagacacattttattctcatacacccttgtac 2177502  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 10284549 - 10284593
Alignment:
Q  167 ggaaaatgttacgtagacacattttattcttatacacccttgtac 211  Q
    |||||||||||| ||||||| ||||||||||||||| ||||||||    
T  10284549 ggaaaatgttacatagacaccttttattcttatacaaccttgtac 10284593  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 20074869 - 20074907
Alignment:
Q  166 aggaaaatgttacgtagacacattttattcttatacacc 204  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  20074869 aggaaaatgttacatagacacattttattctcatacacc 20074907  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 41758772 - 41758725
Alignment:
Q  164 aaaggaaaatgttacgtagacacattttattcttatacacccttgtac 211  Q
    |||| |||||||||| ||||||||||||||||| ||||| ||||||||    
T  41758772 aaagaaaaatgttacatagacacattttattctcatacatccttgtac 41758725  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 33436386 - 33436346
Alignment:
Q  164 aaaggaaaatgttacgtagacacattttattcttatacacc 204  Q
    ||||||||||||||| ||||||| ||||||||| |||||||    
T  33436386 aaaggaaaatgttacatagacaccttttattctcatacacc 33436346  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 45044475 - 45044522
Alignment:
Q  164 aaaggaaaatgttacgtagacacattttattcttatacacccttgtac 211  Q
    ||||||||||||||||||||||   |||||||| ||||||||||||||    
T  45044475 aaaggaaaatgttacgtagacatcatttattctcatacacccttgtac 45044522  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 21234584 - 21234539
Alignment:
Q  166 aggaaaatgttacgtagacacattttattcttatacacccttgtac 211  Q
    ||||||||||||| ||||||| ||||||||| ||||||| ||||||    
T  21234584 aggaaaatgttacatagacaccttttattctcatacaccattgtac 21234539  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 46033719 - 46033763
Alignment:
Q  167 ggaaaatgttacgtagacacattttattcttatacacccttgtac 211  Q
    |||||||||||| |||||||  |||||||| ||||||||||||||    
T  46033719 ggaaaatgttacatagacaccatttattctcatacacccttgtac 46033763  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 22421997 - 22422041
Alignment:
Q  167 ggaaaatgttacgtagacacattttattcttatacacccttgtac 211  Q
    |||||||||||| |||||||  |||||||| ||||||||||||||    
T  22421997 ggaaaatgttacatagacaccatttattctcatacacccttgtac 22422041  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 31976430 - 31976386
Alignment:
Q  167 ggaaaatgttacgtagacacattttattcttatacacccttgtac 211  Q
    |||||||||||| |||||||  |||||||| ||||||||||||||    
T  31976430 ggaaaatgttacatagacaccatttattctcatacacccttgtac 31976386  T

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