View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10346_high_7 (Length: 514)
Name: NF10346_high_7
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10346_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 29 - 498
Target Start/End: Complemental strand, 45462063 - 45461573
Alignment:
| Q |
29 |
aatcagagtagcggcactggcctggtcaaagagagtagtgttgccacataggcaagggcatggaaagaacaagaaaaggaagaagaagacagtagtacta |
128 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45462063 |
aatcagagtagcggcactggcctggtcaaagagaatagtgttgccacataggcaagggcatggaaagaacaagaaaaggaagaagaagacagtagtacta |
45461964 |
T |
|
| Q |
129 |
tgtgaaggagttgttaaagacaagaacaaaatcatgcatatttggcaaactatgattttccctgtcaggcgtctatgtcttgctctctctacccgtatca |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45461963 |
tgtgaaggagttgttaaagacaagaacaaaatcatgcatatttggcaaactatgattttccctgtcaggcgtctatgtcttgctctctctacccgtatca |
45461864 |
T |
|
| Q |
229 |
accacagcaaaaacggtactcatttcattttcatcttgcttcccct----------ctctttaatttgtacgacttttgcttcttaattaattttattat |
318 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45461863 |
accaccgcaaaaacggtactcatttcattttcatcttgcttcccctcaatttcatgctctttaatttgtacgacttttgcttcttaattaattttattat |
45461764 |
T |
|
| Q |
319 |
ttttggatggatggttattatagataattaacaacagataacaaccaaccaac-------------tatgatgatcagtgtcaatatttgctttcggtta |
405 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
45461763 |
ttttggatggatggttattatagataattaacaacaaataacaaccaaccaaccatgttttattatgatgatgatcagtgtcaatatttgctttcggtta |
45461664 |
T |
|
| Q |
406 |
attaatatattacatgacaaattgtttatacctttcggaaatttaattaacaacatattttcagccagcagcatatacggccacctaagtttt |
498 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45461663 |
atta--atattacatgacaaattgtttatacctttcggaaatttaattaacaacctattttcagccagcagcatatacggccacctaagtttt |
45461573 |
T |
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