View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10346_high_8 (Length: 475)
Name: NF10346_high_8
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10346_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 20 - 464
Target Start/End: Complemental strand, 33505654 - 33505208
Alignment:
| Q |
20 |
aatctaaaattcagagtaaaaacagttaattaacagaaatagaattcaaatttgatactttataatataaatcatctagcgaccgctataagagaataga |
119 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33505654 |
aatctagaattcagagtaaaaacagttaattaacagaaatagaattcaaatttgatactttataatataaatcatctagcgaccgctataaaagaataga |
33505555 |
T |
|
| Q |
120 |
gaga--tattagatatatatgtgatgaattaataaacaggaaatattattgttctattccttttaccgaaaagnnnnnnnnnn-gttaagcaggaggcaa |
216 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33505554 |
gagagatattagatatatatgtgatgaattaataa-caggaaatattattgttctattccttttaccgaaaagaaaaaaaaaaagttaagcaggaggcaa |
33505456 |
T |
|
| Q |
217 |
ataaccatgtacgtgttgcatgcttgcgttgcatggctattaacacgtggcacctactaatccctcccacgtatcaccctttcggtgtctcatatatatt |
316 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33505455 |
ataaccatgtacgtgttgcatgcttgcattgcatggctattaacacgtggcacctactaatccctcccacgtatcaccctttcggtgtctcatatatatt |
33505356 |
T |
|
| Q |
317 |
acttagcatcaaagagatcaagagaggaaataagaaattaactgcaaacaaacggttatggcgatgaagctcaagtatctatcctccattgctgaggatg |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33505355 |
acttagcatcaaagagatcaagagaggaaataagaaattaactgcaaacaaacggttatggcgatgaagctcaagtatctatcctccattgctgaggatg |
33505256 |
T |
|
| Q |
417 |
ttgttgctagatgtgcacagtacgtaatattaatactctcctattcat |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33505255 |
ttgttgctagatgtgcacagtacgtaatattaatactctcctattcat |
33505208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University